Wall clock time and date at job start Wed Apr 1 2020 04:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47256 * 299.99408 * 3 2 1 6 6 H 1.48500 * 109.47156 * 59.99735 * 3 2 1 7 7 C 1.38953 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00019 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99830 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99914 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00038 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99847 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00012 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47066 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.47225 * 179.97438 * 15 14 13 17 17 C 1.34778 * 120.00324 * 180.02562 * 16 15 14 18 18 O 1.21608 * 119.99820 * 359.97438 * 17 16 15 19 19 C 1.47396 * 120.00308 * 180.02562 * 17 16 15 20 20 C 1.38870 * 120.01898 * 359.97438 * 19 17 16 21 21 C 1.38231 * 120.46074 * 180.02562 * 20 19 17 22 22 C 1.37956 * 120.27566 * 0.02562 * 21 20 19 23 23 C 1.39184 * 120.45251 * 359.95777 * 22 21 20 24 24 S 1.76138 * 131.63715 * 180.02562 * 23 22 21 25 25 C 1.70688 * 90.71345 * 179.97438 * 24 23 22 26 26 N 1.28156 * 111.37396 * 359.97438 * 25 24 23 27 27 C 1.33644 * 118.01938 * 0.02562 * 26 25 24 28 28 H 0.97005 * 120.00414 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00055 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47136 * 59.99373 * 12 10 9 31 31 H 1.09002 * 109.46646 * 299.99183 * 12 10 9 32 32 H 1.00907 * 110.99781 * 303.95443 * 13 12 10 33 33 H 1.08999 * 109.47009 * 59.99931 * 14 13 12 34 34 H 1.08992 * 109.47214 * 299.99879 * 14 13 12 35 35 H 1.09007 * 109.47514 * 59.99702 * 15 14 13 36 36 H 1.09008 * 109.47422 * 300.00312 * 15 14 13 37 37 H 0.96996 * 120.00276 * 0.02562 * 16 15 14 38 38 H 1.07998 * 119.76871 * 359.97438 * 20 19 17 39 39 H 1.08003 * 119.86428 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.77303 * 180.02562 * 22 21 20 41 41 H 1.07998 * 124.31403 * 179.73662 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8892 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8630 0.0010 13 7 2.1984 -5.9795 0.0017 14 6 1.4981 -7.2708 0.0018 15 6 2.5230 -8.4068 0.0019 16 7 1.8247 -9.6945 0.0026 17 6 2.5294 -10.8434 0.0034 18 8 3.7451 -10.8109 0.0030 19 6 1.8268 -12.1391 0.0035 20 6 0.4386 -12.1766 0.0034 21 6 -0.2297 -13.3867 0.0040 22 6 0.4770 -14.5715 0.0053 23 6 1.8688 -14.5627 0.0051 24 16 3.0474 -15.8718 0.0059 25 6 4.3300 -14.7456 0.0041 26 7 3.8936 -13.5406 0.0026 27 6 2.5705 -13.3521 0.0031 28 1 -0.4851 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6181 -4.9209 -0.8896 31 1 0.6162 -4.9205 0.8904 32 1 2.8339 -5.9124 -0.7792 33 1 0.8736 -7.3455 -0.8884 34 1 0.8729 -7.3450 0.8915 35 1 3.1480 -8.3323 0.8919 36 1 3.1481 -8.3324 -0.8880 37 1 0.8551 -9.7205 0.0025 38 1 -0.1227 -11.2540 0.0036 39 1 -1.3095 -13.4046 0.0035 40 1 -0.0534 -15.5123 0.0054 41 1 5.3760 -15.0142 0.0080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127201165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:52 Heat of formation + Delta-G solvation = -0.456369 kcal Electronic energy + Delta-G solvation = -25633.082132 eV Core-core repulsion = 21639.876333 eV Total energy + Delta-G solvation = -3993.205799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16986 -39.40731 -38.31241 -37.31453 -36.26450 -34.37683 -33.75890 -32.03324 -31.22918 -30.42328 -29.24708 -26.24516 -25.43466 -24.56824 -23.72063 -22.32182 -21.76209 -21.07974 -19.33810 -19.09273 -17.90771 -17.55589 -16.88928 -16.47053 -16.23427 -15.93190 -15.64567 -15.52916 -15.46070 -14.88332 -14.55799 -14.45608 -14.09136 -13.85232 -13.81453 -13.40487 -13.22180 -13.07493 -12.64561 -12.49639 -12.32495 -11.93229 -11.73712 -11.52251 -11.45149 -11.42462 -11.05049 -10.60837 -10.33963 -10.24758 -10.22021 -9.82940 -9.52514 -9.30639 -9.24430 -8.63841 -8.50482 -8.12974 -7.96844 -6.42342 -3.83017 -0.28587 0.30351 0.74675 1.20086 1.90265 2.50834 2.79921 3.16616 3.27382 3.35059 3.38902 3.51410 3.89663 4.00327 4.12782 4.24527 4.39818 4.41621 4.59440 4.65455 4.80849 4.92498 4.98691 5.12143 5.17920 5.25926 5.38399 5.42425 5.53197 5.63829 5.72256 5.84186 5.91198 5.94633 5.98263 6.18394 6.26082 7.09175 7.18061 7.28528 7.55311 7.57029 8.03374 8.06002 8.60556 9.17617 9.53437 10.04835 10.75451 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.036368 B = 0.001403 C = 0.001352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.719260 B =19956.027510 C =20697.966269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.581 6.581 12 C 0.053 3.947 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.122 3.878 16 N -0.726 5.726 17 C 0.550 3.450 18 O -0.501 6.501 19 C -0.078 4.078 20 C -0.071 4.071 21 C -0.110 4.110 22 C -0.046 4.046 23 C -0.193 4.193 24 S 0.095 5.905 25 C 0.074 3.926 26 N -0.438 5.438 27 C 0.130 3.870 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.353 0.647 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.397 0.603 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 -34.389 -0.897 34.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.465 6.465 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.081 4.081 15 C -0.002 4.002 16 N -0.380 5.380 17 C 0.335 3.665 18 O -0.375 6.375 19 C -0.085 4.085 20 C -0.092 4.092 21 C -0.131 4.131 22 C -0.068 4.068 23 C -0.312 4.312 24 S 0.349 5.651 25 C -0.230 4.230 26 N -0.149 5.149 27 C 0.007 3.993 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.173 0.827 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.092 -34.815 -0.218 34.953 hybrid contribution -1.481 1.594 -0.889 2.350 sum -4.573 -33.221 -1.107 33.553 Atomic orbital electron populations 1.69616 1.05949 1.28060 1.50722 1.25261 0.95638 0.99736 0.97305 0.85794 0.79752 0.81082 0.77686 1.19187 1.20778 1.20740 1.19772 0.93449 0.82209 1.47441 0.87817 1.41859 1.09188 1.04592 1.64394 1.19782 0.88401 0.84701 0.84593 1.90536 1.13730 1.87013 1.55250 1.21670 0.94220 0.90803 1.01320 1.59918 1.18821 0.99424 1.51717 1.22076 0.95552 0.89420 1.01003 1.21298 0.94949 0.80285 1.03659 1.45817 1.10150 1.05813 1.76244 1.17927 0.87393 0.83282 0.77857 1.90893 1.12731 1.86970 1.46895 1.19605 0.92794 0.91346 1.04709 1.21268 0.92215 0.99278 0.96435 1.21089 1.00678 0.91196 1.00167 1.20523 0.90027 0.99467 0.96795 1.23921 0.99548 0.96279 1.11413 1.84054 0.97731 1.09925 1.73405 1.28484 1.04994 0.89750 0.99795 1.65978 1.13160 1.21610 1.14146 1.18776 0.87269 0.92334 1.00921 0.91931 0.77466 0.93709 0.89450 0.82744 0.94902 0.90426 0.89990 0.91164 0.76820 0.84147 0.83796 0.84582 0.77649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 10 C 0.44 10.37 7.82 -10.98 -0.09 10.29 16 11 O -0.58 -15.93 15.78 5.55 0.09 -15.84 16 12 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 13 N -0.67 -10.55 6.13 -115.07 -0.70 -11.25 16 14 C 0.05 0.56 5.80 -3.83 -0.02 0.54 16 15 C 0.12 1.43 5.93 -4.05 -0.02 1.41 16 16 N -0.73 -7.17 5.50 -61.39 -0.34 -7.51 16 17 C 0.55 7.01 7.76 -12.53 -0.10 6.92 16 18 O -0.50 -8.62 15.78 5.27 0.08 -8.53 16 19 C -0.08 -0.81 5.92 -104.38 -0.62 -1.43 16 20 C -0.07 -0.44 9.50 -39.35 -0.37 -0.82 16 21 C -0.11 -0.52 10.02 -39.69 -0.40 -0.92 16 22 C -0.05 -0.26 10.05 -39.33 -0.40 -0.66 16 23 C -0.19 -1.61 6.55 -38.60 -0.25 -1.87 16 24 S 0.09 0.60 23.18 -107.50 -2.49 -1.89 16 25 C 0.07 0.60 12.12 51.23 0.62 1.22 16 26 N -0.44 -5.42 9.43 -12.74 -0.12 -5.54 16 27 C 0.13 1.48 6.73 -84.89 -0.57 0.91 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 37 H 0.40 2.52 6.47 -40.82 -0.26 2.25 16 38 H 0.14 0.46 6.34 -52.49 -0.33 0.12 16 39 H 0.14 0.23 8.06 -52.48 -0.42 -0.19 16 40 H 0.14 0.42 8.06 -52.48 -0.42 -0.01 16 41 H 0.21 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -37.50 372.18 -9.29 -46.79 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -4.57 Total: 11.69 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -2.49 Total: 8.44 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.50 Total: -62.33 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.17 Total: -24.38 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.49 Total: -1.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.50 -9.29 -46.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127201165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.332 kcal (2) G-P(sol) polarization free energy of solvation -37.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds