Wall clock time and date at job start Wed Apr 1 2020 04:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47256 * 299.99408 * 3 2 1 6 6 H 1.48500 * 109.47156 * 59.99735 * 3 2 1 7 7 C 1.38953 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00019 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99830 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99914 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00038 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99847 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00012 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47066 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.47225 * 179.97438 * 15 14 13 17 17 C 1.34778 * 120.00324 * 180.02562 * 16 15 14 18 18 O 1.21608 * 119.99820 * 359.97438 * 17 16 15 19 19 C 1.47396 * 120.00308 * 180.02562 * 17 16 15 20 20 C 1.38870 * 120.01898 * 359.97438 * 19 17 16 21 21 C 1.38231 * 120.46074 * 180.02562 * 20 19 17 22 22 C 1.37956 * 120.27566 * 0.02562 * 21 20 19 23 23 C 1.39184 * 120.45251 * 359.95777 * 22 21 20 24 24 S 1.76138 * 131.63715 * 180.02562 * 23 22 21 25 25 C 1.70688 * 90.71345 * 179.97438 * 24 23 22 26 26 N 1.28156 * 111.37396 * 359.97438 * 25 24 23 27 27 C 1.33644 * 118.01938 * 0.02562 * 26 25 24 28 28 H 0.97005 * 120.00414 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00055 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47136 * 59.99373 * 12 10 9 31 31 H 1.09002 * 109.46646 * 299.99183 * 12 10 9 32 32 H 1.00907 * 110.99781 * 303.95443 * 13 12 10 33 33 H 1.08999 * 109.47009 * 59.99931 * 14 13 12 34 34 H 1.08992 * 109.47214 * 299.99879 * 14 13 12 35 35 H 1.09007 * 109.47514 * 59.99702 * 15 14 13 36 36 H 1.09008 * 109.47422 * 300.00312 * 15 14 13 37 37 H 0.96996 * 120.00276 * 0.02562 * 16 15 14 38 38 H 1.07998 * 119.76871 * 359.97438 * 20 19 17 39 39 H 1.08003 * 119.86428 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.77303 * 180.02562 * 22 21 20 41 41 H 1.07998 * 124.31403 * 179.73662 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8892 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8630 0.0010 13 7 2.1984 -5.9795 0.0017 14 6 1.4981 -7.2708 0.0018 15 6 2.5230 -8.4068 0.0019 16 7 1.8247 -9.6945 0.0026 17 6 2.5294 -10.8434 0.0034 18 8 3.7451 -10.8109 0.0030 19 6 1.8268 -12.1391 0.0035 20 6 0.4386 -12.1766 0.0034 21 6 -0.2297 -13.3867 0.0040 22 6 0.4770 -14.5715 0.0053 23 6 1.8688 -14.5627 0.0051 24 16 3.0474 -15.8718 0.0059 25 6 4.3300 -14.7456 0.0041 26 7 3.8936 -13.5406 0.0026 27 6 2.5705 -13.3521 0.0031 28 1 -0.4851 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6181 -4.9209 -0.8896 31 1 0.6162 -4.9205 0.8904 32 1 2.8339 -5.9124 -0.7792 33 1 0.8736 -7.3455 -0.8884 34 1 0.8729 -7.3450 0.8915 35 1 3.1480 -8.3323 0.8919 36 1 3.1481 -8.3324 -0.8880 37 1 0.8551 -9.7205 0.0025 38 1 -0.1227 -11.2540 0.0036 39 1 -1.3095 -13.4046 0.0035 40 1 -0.0534 -15.5123 0.0054 41 1 5.3760 -15.0142 0.0080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127201165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:52 Heat of formation + Delta-G solvation = -31.530235 kcal Electronic energy + Delta-G solvation = -25634.429596 eV Core-core repulsion = 21639.876333 eV Total energy + Delta-G solvation = -3994.553263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80736 -40.32302 -40.09284 -37.86706 -37.46247 -36.00118 -35.24837 -33.27773 -32.66953 -30.94522 -30.36685 -27.74705 -26.17994 -25.69471 -24.81453 -23.24306 -22.40091 -21.88304 -21.09700 -19.94895 -19.79741 -18.25278 -17.74021 -17.51093 -17.28180 -17.11645 -16.58904 -16.41010 -16.35756 -16.03425 -15.82521 -15.77430 -15.23673 -15.17953 -14.82881 -14.60334 -14.33407 -14.00464 -13.58915 -13.51104 -13.32422 -13.12135 -12.96266 -12.90754 -12.60357 -12.42801 -12.39752 -12.24158 -12.11815 -11.51696 -11.18384 -11.13501 -10.50123 -10.36540 -10.20788 -10.01335 -9.81502 -9.37769 -9.16918 -8.47089 -5.95524 -0.86134 -0.20421 0.25897 0.63472 1.36559 1.36638 1.42268 1.56223 1.74049 1.92528 2.05435 2.30434 2.72687 2.98880 3.03784 3.20422 3.45614 3.59785 3.80526 3.83487 3.96532 4.10545 4.17701 4.19026 4.32444 4.45298 4.46510 4.51692 4.58343 4.63381 4.88958 4.93539 5.01071 5.04046 5.19173 5.29390 5.41423 5.60099 5.84958 6.07546 6.31542 6.46707 6.60437 6.65722 7.13013 7.18612 7.56382 8.12366 8.70399 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.036368 B = 0.001403 C = 0.001352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.719260 B =19956.027510 C =20697.966269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.688 5.688 14 C 0.060 3.940 15 C 0.129 3.871 16 N -0.707 5.707 17 C 0.546 3.454 18 O -0.561 6.561 19 C -0.119 4.119 20 C -0.053 4.053 21 C -0.102 4.102 22 C -0.039 4.039 23 C -0.215 4.215 24 S 0.148 5.852 25 C 0.063 3.937 26 N -0.499 5.499 27 C 0.096 3.904 28 H 0.278 0.722 29 H 0.398 0.602 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.345 0.655 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.417 0.583 38 H 0.172 0.828 39 H 0.187 0.813 40 H 0.168 0.832 41 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.783 -35.917 -0.980 36.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.063 4.063 13 N -0.321 5.321 14 C -0.069 4.069 15 C 0.005 3.995 16 N -0.362 5.362 17 C 0.334 3.666 18 O -0.440 6.440 19 C -0.125 4.125 20 C -0.074 4.074 21 C -0.123 4.123 22 C -0.062 4.062 23 C -0.334 4.334 24 S 0.403 5.597 25 C -0.240 4.240 26 N -0.212 5.212 27 C -0.027 4.027 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.164 0.836 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.256 0.744 38 H 0.189 0.811 39 H 0.205 0.795 40 H 0.186 0.814 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -6.706 -36.371 -0.297 36.985 hybrid contribution -0.437 1.918 -0.860 2.147 sum -7.143 -34.453 -1.157 35.204 Atomic orbital electron populations 1.69663 1.06721 1.29248 1.50286 1.26001 0.96551 1.02285 0.96232 0.84888 0.77962 0.77204 0.78374 1.20047 1.19488 1.19566 1.19700 0.92690 0.84159 1.49986 0.90531 1.41910 1.09368 1.04619 1.65012 1.20968 0.88268 0.86353 0.82211 1.90507 1.16112 1.88001 1.56672 1.21529 0.93695 0.87380 1.03733 1.59882 1.19423 1.00924 1.51868 1.22062 0.95071 0.86562 1.03178 1.21052 0.95127 0.81594 1.01731 1.45573 1.11008 1.04446 1.75172 1.18467 0.86950 0.84672 0.76556 1.90848 1.15351 1.87855 1.49940 1.19619 0.94457 0.89745 1.08690 1.21689 0.90470 1.01544 0.93718 1.21613 1.02604 0.89938 0.98155 1.21065 0.88970 1.01457 0.94667 1.24289 1.01043 0.96017 1.12097 1.83712 0.95871 1.07991 1.72128 1.28931 1.06819 0.89623 0.98603 1.65983 1.14697 1.23866 1.16611 1.19111 0.87448 0.93842 1.02330 0.91258 0.76799 0.90753 0.87127 0.83613 0.92099 0.88472 0.92587 0.92759 0.74439 0.81057 0.79531 0.81422 0.75442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.11 13.05 21.66 0.28 -48.82 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 3 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.34 -19.20 9.68 84.04 0.81 -18.38 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 10 C 0.43 20.62 7.82 87.66 0.69 21.30 16 11 O -0.63 -35.38 15.78 -3.05 -0.05 -35.43 16 12 C 0.07 2.23 6.17 85.56 0.53 2.76 16 13 N -0.69 -21.17 6.13 -517.96 -3.17 -24.35 16 14 C 0.06 1.23 5.80 86.30 0.50 1.73 16 15 C 0.13 3.08 5.93 86.38 0.51 3.59 16 16 N -0.71 -13.59 5.50 -466.40 -2.57 -16.15 16 17 C 0.55 14.59 7.76 86.65 0.67 15.26 16 18 O -0.56 -21.11 15.78 -4.06 -0.06 -21.17 16 19 C -0.12 -2.47 5.92 -19.71 -0.12 -2.59 16 20 C -0.05 -0.52 9.50 22.42 0.21 -0.31 16 21 C -0.10 -0.54 10.02 22.20 0.22 -0.32 16 22 C -0.04 -0.32 10.05 22.43 0.23 -0.10 16 23 C -0.22 -3.38 6.55 22.91 0.15 -3.23 16 24 S 0.15 1.74 23.18 -56.49 -1.31 0.44 16 25 C 0.06 1.07 12.12 130.78 1.58 2.65 16 26 N -0.50 -13.32 9.43 -194.19 -1.83 -15.15 16 27 C 0.10 2.25 6.73 40.28 0.27 2.52 16 28 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 29 H 0.40 18.98 7.90 -92.71 -0.73 18.24 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.35 11.49 8.43 -89.69 -0.76 10.73 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.42 4.24 6.47 -92.71 -0.60 3.64 16 38 H 0.17 0.40 6.34 -2.91 -0.02 0.38 16 39 H 0.19 -0.58 8.06 -2.91 -0.02 -0.60 16 40 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 41 H 0.23 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -88.18 372.18 -2.54 -90.72 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.96 Total: 30.77 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: 6.73 Total: 24.78 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -8.91 Total: -135.26 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -0.11 Total: -56.60 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.31 Total: 0.44 kcal Total: -88.18 -2.54 -90.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127201165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.192 kcal (2) G-P(sol) polarization free energy of solvation -88.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds