Wall clock time and date at job start Wed Apr 1 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46853 * 201.46573 * 3 2 1 5 5 C 1.36973 * 120.00270 * 264.97246 * 4 3 2 6 6 H 1.07992 * 119.99885 * 197.08560 * 5 4 3 7 7 C 1.38949 * 119.99788 * 17.08184 * 5 4 3 8 8 N 1.31437 * 119.99871 * 14.10604 * 7 5 4 9 9 Si 1.86799 * 120.00105 * 194.10450 * 7 5 4 10 10 H 1.48496 * 109.46851 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47047 * 120.00082 * 9 7 5 12 12 H 1.48499 * 109.46938 * 240.00290 * 9 7 5 13 13 C 1.34773 * 120.00191 * 84.96930 * 4 3 2 14 14 O 1.21752 * 120.00206 * 4.13313 * 13 4 3 15 15 C 1.46485 * 120.00246 * 184.13130 * 13 4 3 16 16 C 1.40708 * 126.54262 * 310.95343 * 15 13 4 17 17 N 1.30679 * 108.73293 * 180.25325 * 16 15 13 18 18 N 1.39875 * 109.52955 * 359.79396 * 17 16 15 19 19 C 1.36625 * 108.17238 * 359.97438 * 18 17 16 20 20 N 1.33273 * 120.96153 * 179.97438 * 19 18 17 21 21 C 1.31632 * 121.31304 * 0.02562 * 20 19 18 22 22 C 1.39484 * 120.26005 * 0.02562 * 21 20 19 23 23 C 1.37207 * 132.19997 * 179.97438 * 18 17 16 24 24 C 1.47722 * 120.61671 * 0.02851 * 23 18 17 25 25 C 1.40071 * 120.56083 * 179.72028 * 24 23 18 26 26 C 1.38345 * 118.27943 * 179.75830 * 25 24 23 27 27 C 1.38361 * 119.30992 * 0.56744 * 26 25 24 28 28 N 1.31917 * 121.09800 * 359.66974 * 27 26 25 29 29 C 1.31693 * 121.88550 * 0.02620 * 28 27 26 30 30 H 1.09003 * 109.47101 * 81.46947 * 3 2 1 31 31 H 1.08993 * 109.47321 * 321.46694 * 3 2 1 32 32 H 0.97001 * 119.99897 * 180.02562 * 8 7 5 33 33 H 1.08007 * 125.63528 * 0.04563 * 16 15 13 34 34 H 1.08002 * 119.86876 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.45784 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.86066 * 0.02562 * 25 24 23 37 37 H 1.08003 * 120.34144 * 180.25750 * 26 25 24 38 38 H 1.08003 * 119.44711 * 179.70140 * 27 26 25 39 39 H 1.07996 * 119.72643 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.2863 0.5055 5 6 3.4215 2.2876 -0.3706 6 1 4.0289 3.1173 -0.0406 7 6 2.9706 2.2357 -1.6838 8 7 2.0182 1.3940 -2.0189 9 14 3.7177 3.3621 -2.9732 10 1 4.7632 4.2088 -2.3446 11 1 4.3257 2.5437 -4.0529 12 1 2.6576 4.2296 -3.5467 13 6 3.2237 1.4839 1.8324 14 8 3.0063 0.5707 2.6077 15 6 3.6244 2.7975 2.3421 16 6 4.7095 3.5740 1.8955 17 7 4.7505 4.6784 2.5930 18 7 3.7028 4.6852 3.5197 19 6 2.9953 3.5259 3.3716 20 7 1.9339 3.2681 4.1353 21 6 1.5306 4.1183 5.0557 22 6 2.2135 5.3187 5.2512 23 6 3.3166 5.5992 4.4674 24 6 4.0654 6.8600 4.6458 25 6 3.6666 7.7949 5.6097 26 6 4.4050 8.9575 5.7400 27 6 5.4959 9.1633 4.9142 28 7 5.8455 8.2673 4.0113 29 6 5.1788 7.1427 3.8527 30 1 2.9714 -0.1516 -1.0163 31 1 2.9717 -0.8030 0.6402 32 1 1.7037 1.3575 -2.9357 33 1 5.3972 3.3009 1.1087 34 1 0.6671 3.8858 5.6612 35 1 1.8856 6.0184 6.0058 36 1 2.8076 7.6108 6.2379 37 1 4.1297 9.6991 6.4753 38 1 6.0709 10.0723 5.0107 39 1 5.4956 6.4336 3.1023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143315718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:55 Heat of formation + Delta-G solvation = 159.673103 kcal Electronic energy + Delta-G solvation = -29197.375438 eV Core-core repulsion = 25107.962174 eV Total energy + Delta-G solvation = -4089.413264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.108 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.46959 -41.11862 -40.41967 -38.95988 -37.39848 -36.28850 -35.92085 -33.62021 -33.39538 -32.35620 -31.64760 -30.78973 -29.01984 -26.77648 -26.39874 -25.17374 -24.03552 -23.91852 -22.91257 -21.00651 -19.97497 -19.22972 -18.54326 -18.37234 -18.00484 -17.63378 -17.22789 -17.05289 -16.75154 -16.36022 -15.99869 -15.90275 -15.30736 -15.16705 -14.98220 -14.85005 -14.48309 -14.37153 -14.10399 -13.82004 -13.74331 -13.65743 -13.37684 -13.17990 -13.04973 -12.90790 -12.67836 -12.35046 -12.29099 -12.10868 -11.94362 -11.18427 -10.92547 -10.86083 -10.63306 -10.58207 -10.51453 -10.11581 -9.93770 -8.81595 -8.32120 -5.93144 -1.05461 -0.28548 0.21941 0.41239 0.84318 1.22719 1.48218 1.52810 1.63429 1.79123 2.13555 2.27847 2.37557 2.45826 2.66902 2.80175 2.87780 3.08062 3.11043 3.30963 3.55470 3.69861 3.71729 3.84397 3.96253 4.00359 4.14535 4.18881 4.26716 4.40847 4.54205 4.59461 4.79544 4.85098 4.92598 5.00165 5.05093 5.09894 5.22805 5.45866 5.52125 5.67363 5.68784 6.25087 6.38745 6.66099 6.90634 7.00565 7.10047 7.48180 7.88812 8.71235 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.003532 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.999652 B = 7926.549193 C = 9374.724578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.268 3.732 3 C 0.233 3.767 4 N -0.444 5.444 5 C -0.343 4.343 6 H 0.121 0.879 7 C -0.001 4.001 8 N -0.902 5.902 9 Si 0.987 3.013 10 H -0.252 1.252 11 H -0.270 1.270 12 H -0.297 1.297 13 C 0.543 3.457 14 O -0.619 6.619 15 C -0.276 4.276 16 C 0.139 3.861 17 N -0.332 5.332 18 N -0.310 5.310 19 C 0.292 3.708 20 N -0.507 5.507 21 C 0.186 3.814 22 C -0.196 4.196 23 C 0.220 3.780 24 C -0.146 4.146 25 C -0.031 4.031 26 C -0.164 4.164 27 C 0.106 3.894 28 N -0.518 5.518 29 C 0.108 3.892 30 H 0.140 0.860 31 H 0.104 0.896 32 H 0.272 0.728 33 H 0.227 0.773 34 H 0.227 0.773 35 H 0.228 0.772 36 H 0.189 0.811 37 H 0.189 0.811 38 H 0.189 0.811 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.676 17.654 16.196 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C -0.049 4.049 3 C 0.106 3.894 4 N -0.163 5.163 5 C -0.470 4.470 6 H 0.138 0.862 7 C -0.202 4.202 8 N -0.542 5.542 9 Si 0.811 3.189 10 H -0.176 1.176 11 H -0.195 1.195 12 H -0.224 1.224 13 C 0.333 3.667 14 O -0.506 6.506 15 C -0.293 4.293 16 C -0.040 4.040 17 N -0.155 5.155 18 N -0.080 5.080 19 C 0.060 3.940 20 N -0.219 5.219 21 C 0.007 3.993 22 C -0.218 4.218 23 C 0.104 3.896 24 C -0.149 4.149 25 C -0.057 4.057 26 C -0.183 4.183 27 C -0.051 4.051 28 N -0.227 5.227 29 C -0.050 4.050 30 H 0.157 0.843 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.243 0.757 34 H 0.243 0.757 35 H 0.244 0.756 36 H 0.206 0.794 37 H 0.206 0.794 38 H 0.205 0.795 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.920 17.495 15.637 23.975 hybrid contribution -0.268 -0.202 -0.921 0.980 sum 4.652 17.293 14.716 23.178 Atomic orbital electron populations 1.80800 1.14806 1.10893 1.13720 1.29811 0.95944 0.90430 0.88678 1.18822 0.79982 0.87206 1.03354 1.43638 1.56195 1.12316 1.04124 1.20307 1.31816 1.04059 0.90795 0.86215 1.26035 0.94991 0.98979 1.00222 1.69963 1.25581 1.38493 1.20128 0.84941 0.78006 0.77868 0.78064 1.17568 1.19478 1.22430 1.17112 0.81106 0.86587 0.81875 1.90638 1.57857 1.44791 1.57322 1.19348 1.04596 1.00419 1.04890 1.24433 0.95483 0.88404 0.95640 1.77001 1.07922 1.23289 1.07317 1.47114 1.21413 1.14483 1.25010 1.20314 0.90826 0.86416 0.96421 1.68085 1.11890 1.33973 1.07993 1.24282 0.97591 0.87476 0.89962 1.22740 0.94444 1.01366 1.03259 1.19980 0.94539 0.88302 0.86815 1.19519 0.98928 0.93814 1.02615 1.22199 0.99188 0.90975 0.93340 1.22590 0.95624 0.98637 1.01416 1.23758 0.94644 0.97642 0.89043 1.67825 1.31013 1.02865 1.20964 1.23885 0.90433 0.94092 0.96584 0.84267 0.87865 0.91771 0.75701 0.75653 0.75601 0.79425 0.79419 0.79455 0.81868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -28.60 18.54 20.01 0.37 -28.23 16 2 C 0.27 13.96 13.67 89.44 1.22 15.18 16 3 C 0.23 10.85 5.11 84.58 0.43 11.28 16 4 N -0.44 -21.87 2.60 -650.13 -1.69 -23.56 16 5 C -0.34 -16.32 9.06 84.06 0.76 -15.56 16 6 H 0.12 5.30 4.24 -2.91 -0.01 5.29 16 7 C 0.00 -0.05 5.07 84.92 0.43 0.38 16 8 N -0.90 -45.61 9.01 21.67 0.20 -45.42 16 9 Si 0.99 38.17 29.58 68.60 2.03 40.20 16 10 H -0.25 -9.11 7.11 99.48 0.71 -8.41 16 11 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 12 H -0.30 -12.17 7.11 99.48 0.71 -11.46 16 13 C 0.54 27.50 7.44 86.39 0.64 28.15 16 14 O -0.62 -34.39 16.75 -4.51 -0.08 -34.47 16 15 C -0.28 -12.45 5.35 -19.87 -0.11 -12.55 16 16 C 0.14 5.27 9.80 85.47 0.84 6.11 16 17 N -0.33 -11.91 9.47 -56.54 -0.54 -12.45 16 18 N -0.31 -10.76 3.87 -180.44 -0.70 -11.45 16 19 C 0.29 12.02 7.90 134.04 1.06 13.08 16 20 N -0.51 -19.09 10.44 -192.12 -2.01 -21.09 16 21 C 0.19 4.12 11.26 85.02 0.96 5.07 16 22 C -0.20 -3.16 9.50 22.56 0.21 -2.95 16 23 C 0.22 5.44 6.81 40.80 0.28 5.72 16 24 C -0.15 -3.00 5.89 -20.00 -0.12 -3.12 16 25 C -0.03 -0.31 9.55 22.74 0.22 -0.10 16 26 C -0.16 -1.30 10.10 22.32 0.23 -1.08 16 27 C 0.11 1.46 11.17 84.71 0.95 2.41 16 28 N -0.52 -12.18 10.34 -194.70 -2.01 -14.19 16 29 C 0.11 2.82 10.68 85.04 0.91 3.73 16 30 H 0.14 6.27 6.22 -2.39 -0.01 6.25 16 31 H 0.10 4.40 7.52 -2.39 -0.02 4.39 16 32 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 33 H 0.23 7.29 7.12 -2.91 -0.02 7.26 16 34 H 0.23 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.23 0.61 6.33 -2.91 -0.02 0.59 16 36 H 0.19 0.12 6.38 -2.91 -0.02 0.10 16 37 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 38 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.16 5.09 5.06 -2.91 -0.01 5.07 16 Total: -1.00 -84.58 345.63 5.65 -78.93 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.16 Total: 15.98 kcal Atomic # 6 Polarization: 46.85 SS G_CDS: 8.91 Total: 55.76 kcal Atomic # 7 Polarization: -150.02 SS G_CDS: -6.37 Total: -156.40 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.08 Total: -34.47 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -84.58 5.65 -78.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143315718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.602 kcal (2) G-P(sol) polarization free energy of solvation -84.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds