Wall clock time and date at job start Wed Apr 1 2020 05:30:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86800 * 119.99738 * 2 1
4 4 H 1.48499 * 109.47235 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47387 * 299.99976 * 3 2 1
6 6 H 1.48500 * 109.47260 * 59.99991 * 3 2 1
7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99646 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99949 * 0.02562 * 7 2 1
10 10 N 1.46901 * 109.46937 * 179.97438 * 9 7 2
11 11 C 1.46893 * 110.99959 * 169.99823 * 10 9 7
12 12 C 1.53235 * 109.34393 * 187.25283 * 11 10 9
13 13 N 1.47082 * 108.52129 * 306.17112 * 12 11 10
14 14 C 1.34774 * 120.88525 * 231.18383 * 13 12 11
15 15 O 1.21649 * 120.00467 * 180.21871 * 14 13 12
16 16 C 1.47000 * 119.99418 * 0.22153 * 14 13 12
17 17 C 1.35904 * 125.44305 * 151.58332 * 16 14 13
18 18 C 1.41438 * 107.59000 * 179.97438 * 17 16 14
19 19 C 1.40965 * 107.16162 * 0.02562 * 18 17 16
20 20 N 1.32713 * 119.94086 * 180.02562 * 19 18 17
21 21 C 1.31611 * 121.73853 * 359.97438 * 20 19 18
22 22 C 1.38635 * 121.58474 * 359.68038 * 21 20 19
23 23 C 1.38231 * 119.47682 * 0.61839 * 22 21 20
24 24 Cl 1.73596 * 120.96516 * 179.69355 * 23 22 21
25 25 N 1.37217 * 107.21326 * 359.97438 * 19 18 17
26 26 H 0.97000 * 125.53443 * 180.02562 * 25 19 18
27 27 C 1.47082 * 118.23527 * 51.45178 * 13 12 11
28 28 C 1.46899 * 110.99770 * 294.29894 * 10 9 7
29 29 H 0.96990 * 120.00069 * 0.02562 * 1 2 3
30 30 H 1.08997 * 109.47227 * 60.00005 * 9 7 2
31 31 H 1.08997 * 109.46828 * 299.99725 * 9 7 2
32 32 H 1.09003 * 109.49242 * 67.29094 * 11 10 9
33 33 H 1.09005 * 109.49367 * 307.21653 * 11 10 9
34 34 H 1.08994 * 109.63205 * 186.46407 * 12 11 10
35 35 H 1.09002 * 109.62895 * 65.87752 * 12 11 10
36 36 H 1.07999 * 126.20487 * 359.97438 * 17 16 14
37 37 H 1.08014 * 119.20773 * 179.97438 * 21 20 19
38 38 H 1.08000 * 120.26095 * 180.33715 * 22 21 20
39 39 H 1.09003 * 109.62776 * 68.25327 * 27 13 12
40 40 H 1.09000 * 109.62908 * 188.83173 * 27 13 12
41 41 H 1.08996 * 109.49299 * 292.70781 * 28 10 9
42 42 H 1.08995 * 109.49192 * 52.78961 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8904 2.3965 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0001
9 6 1.2512 -2.4992 0.0005
10 7 2.2059 -3.6157 0.0005
11 6 1.5215 -4.8934 0.2387
12 6 2.5640 -6.0031 0.4115
13 7 3.4619 -5.9862 -0.7534
14 6 3.7122 -7.1122 -1.4503
15 8 4.4606 -7.0807 -2.4088
16 6 3.0808 -8.3786 -1.0521
17 6 2.7840 -9.4082 -1.8880
18 6 2.1900 -10.4309 -1.1122
19 6 2.1441 -9.9697 0.2191
20 7 1.6291 -10.7396 1.1694
21 6 1.1518 -11.9377 0.9070
22 6 1.1565 -12.4555 -0.3791
23 6 1.6854 -11.7051 -1.4125
24 17 1.7182 -12.3188 -3.0360
25 7 2.6943 -8.7127 0.2325
26 1 2.7957 -8.1501 1.0161
27 6 4.0839 -4.7089 -1.1339
28 6 2.9769 -3.6490 -1.2494
29 1 -0.4850 0.8400 -0.0004
30 1 0.6249 -2.5571 -0.8897
31 1 0.6243 -2.5567 0.8903
32 1 0.8798 -5.1263 -0.6111
33 1 0.9163 -4.8190 1.1422
34 1 2.0635 -6.9693 0.4739
35 1 3.1397 -5.8264 1.3201
36 1 2.9682 -9.4398 -2.9517
37 1 0.7423 -12.5300 1.7121
38 1 0.7544 -13.4393 -0.5712
39 1 4.8029 -4.4101 -0.3710
40 1 4.5888 -4.8190 -2.0937
41 1 2.3150 -3.8992 -2.0785
42 1 3.4272 -2.6721 -1.4251
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001153023158.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:30:46
Heat of formation + Delta-G solvation = 62.762254 kcal
Electronic energy + Delta-G solvation = -27548.980197 eV
Core-core repulsion = 23556.472058 eV
Total energy + Delta-G solvation = -3992.508140 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.109 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.35599 -40.10860 -38.22007 -37.63191 -37.02336 -34.70159 -33.22093 -32.50176
-31.38762 -30.47032 -29.88767 -28.37117 -25.90817 -24.94443 -23.50606 -23.16994
-22.37937 -21.54309 -20.72284 -19.66229 -18.44584 -17.86115 -16.77387 -16.47345
-16.24860 -15.84786 -15.80016 -15.13243 -14.99581 -14.70123 -14.59279 -14.25398
-13.94149 -13.76033 -13.70314 -13.55543 -13.24166 -13.06099 -12.91789 -12.46140
-12.24301 -12.03339 -11.43675 -11.38841 -11.32983 -10.96623 -10.87879 -10.70485
-10.66371 -10.47094 -10.23580 -9.99254 -9.94071 -9.35725 -9.00857 -8.78276
-8.54006 -8.43587 -7.46819 -6.12585 -4.14879 0.13294 0.82916 1.56574
1.69726 2.15396 2.69001 3.05092 3.25254 3.32349 3.33244 3.37166
4.00481 4.08344 4.26667 4.32567 4.40729 4.55756 4.63600 4.91527
4.92596 5.09263 5.15594 5.23515 5.24590 5.28991 5.43813 5.52989
5.62147 5.72413 5.81669 5.85405 5.87139 6.03417 6.17393 6.30041
6.39127 6.53849 6.70632 7.10476 7.15579 7.22014 7.48383 7.65765
7.87529 7.90178 8.01743 8.37447 8.92408 9.50194 10.98270
Molecular weight = 348.11amu
Principal moments of inertia in cm(-1)
A = 0.021357 B = 0.002206 C = 0.002126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1310.706165 B =12691.693218 C =13168.279846
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.056 3.944
3 Si 0.899 3.101
4 H -0.271 1.271
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.511 4.511
8 H 0.065 0.935
9 C 0.194 3.806
10 N -0.535 5.535
11 C 0.042 3.958
12 C 0.089 3.911
13 N -0.599 5.599
14 C 0.580 3.420
15 O -0.522 6.522
16 C 0.048 3.952
17 C -0.102 4.102
18 C -0.155 4.155
19 C 0.306 3.694
20 N -0.491 5.491
21 C 0.162 3.838
22 C -0.196 4.196
23 C 0.061 3.939
24 Cl -0.046 7.046
25 N -0.561 5.561
26 H 0.431 0.569
27 C 0.115 3.885
28 C 0.050 3.950
29 H 0.262 0.738
30 H -0.008 1.008
31 H 0.032 0.968
32 H 0.030 0.970
33 H 0.084 0.916
34 H 0.083 0.917
35 H 0.084 0.916
36 H 0.163 0.837
37 H 0.174 0.826
38 H 0.150 0.850
39 H 0.079 0.921
40 H 0.093 0.907
41 H 0.028 0.972
42 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.811 -25.405 0.034 25.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.146 4.146
3 Si 0.726 3.274
4 H -0.196 1.196
5 H -0.211 1.211
6 H -0.210 1.210
7 C -0.549 4.549
8 H 0.083 0.917
9 C 0.069 3.931
10 N -0.260 5.260
11 C -0.087 4.087
12 C -0.034 4.034
13 N -0.331 5.331
14 C 0.367 3.633
15 O -0.398 6.398
16 C -0.062 4.062
17 C -0.129 4.129
18 C -0.163 4.163
19 C 0.071 3.929
20 N -0.204 5.204
21 C -0.006 4.006
22 C -0.218 4.218
23 C 0.025 3.975
24 Cl -0.017 7.017
25 N -0.174 5.174
26 H 0.277 0.723
27 C -0.006 4.006
28 C -0.079 4.079
29 H 0.071 0.929
30 H 0.010 0.990
31 H 0.050 0.950
32 H 0.048 0.952
33 H 0.103 0.897
34 H 0.101 0.899
35 H 0.102 0.898
36 H 0.180 0.820
37 H 0.191 0.809
38 H 0.167 0.833
39 H 0.097 0.903
40 H 0.111 0.889
41 H 0.046 0.954
42 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 3.470 -24.651 0.687 24.903
hybrid contribution -0.368 0.699 -1.101 1.355
sum 3.102 -23.951 -0.414 24.155
Atomic orbital electron populations
1.69960 1.06110 1.26860 1.50709 1.24999 0.94875 0.99432 0.95262
0.86429 0.80057 0.83295 0.77576 1.19598 1.21064 1.20969 1.21154
0.93521 0.89774 1.50463 0.91693 1.19739 0.89951 0.87108 0.96293
1.62112 1.27981 1.02409 1.33515 1.22343 0.94459 0.90617 1.01329
1.22442 0.92487 0.99910 0.88571 1.48210 1.46175 1.08836 1.29899
1.17120 0.81253 0.81805 0.83140 1.90857 1.36322 1.85035 1.27544
1.20257 1.05206 0.97114 0.83589 1.20784 1.01474 0.90514 1.00086
1.18560 1.07441 0.95263 0.95008 1.18324 0.97525 0.87409 0.89609
1.66549 1.12960 1.05941 1.34989 1.22578 0.93323 0.89398 0.95317
1.21852 1.04946 1.02346 0.92646 1.20810 0.97314 0.92193 0.87147
1.98403 1.96648 1.86729 1.19943 1.42631 1.51771 1.13354 1.09670
0.72319 1.22090 0.95929 0.80738 1.01861 1.22451 0.95055 0.99227
0.91192 0.92855 0.98995 0.94975 0.95187 0.89724 0.89905 0.89781
0.81968 0.80928 0.83251 0.90304 0.88863 0.95414 0.88108
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16
2 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16
3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16
4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
7 C -0.51 -13.62 8.41 -34.44 -0.29 -13.91 16
8 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16
9 C 0.19 4.76 4.72 -4.97 -0.02 4.73 16
10 N -0.53 -10.51 4.62 -235.48 -1.09 -11.60 16
11 C 0.04 0.67 5.62 -3.71 -0.02 0.65 16
12 C 0.09 1.11 5.60 -3.60 -0.02 1.09 16
13 N -0.60 -8.37 3.00 -173.60 -0.52 -8.89 16
14 C 0.58 8.35 7.63 -12.71 -0.10 8.25 16
15 O -0.52 -8.89 16.42 5.23 0.09 -8.80 16
16 C 0.05 0.59 6.31 -82.26 -0.52 0.07 16
17 C -0.10 -1.22 10.55 -39.20 -0.41 -1.63 16
18 C -0.15 -1.74 6.06 -106.87 -0.65 -2.38 16
19 C 0.31 3.46 8.40 -155.77 -1.31 2.15 16
20 N -0.49 -5.09 10.39 -12.26 -0.13 -5.22 16
21 C 0.16 1.20 11.15 -17.50 -0.20 1.00 16
22 C -0.20 -1.40 9.91 -39.44 -0.39 -1.80 16
23 C 0.06 0.58 6.41 -38.81 -0.25 0.33 16
24 Cl -0.05 -0.40 28.96 -51.86 -1.50 -1.91 16
25 N -0.56 -6.00 4.79 -8.85 -0.04 -6.05 16
26 H 0.43 3.88 6.37 -40.82 -0.26 3.62 16
27 C 0.12 1.73 6.63 -3.36 -0.02 1.71 16
28 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16
29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
30 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16
31 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16
32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16
33 H 0.08 1.29 7.99 -51.93 -0.41 0.88 16
34 H 0.08 0.87 4.02 -51.93 -0.21 0.66 16
35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
36 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16
37 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16
38 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16
39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
40 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16
41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
42 H 0.10 1.95 6.67 -51.93 -0.35 1.60 16
LS Contribution 361.04 15.07 5.44 5.44
Total: -1.00 -31.64 361.04 -11.25 -42.89
By element:
Atomic # 1 Polarization: 5.66 SS G_CDS: -4.90 Total: 0.76 kcal
Atomic # 6 Polarization: 6.90 SS G_CDS: -4.31 Total: 2.58 kcal
Atomic # 7 Polarization: -55.87 SS G_CDS: -1.04 Total: -56.91 kcal
Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal
Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.91 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -31.64 -11.25 -42.89 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001153023158.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.651 kcal
(2) G-P(sol) polarization free energy of solvation -31.636 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.015 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.762 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds