Wall clock time and date at job start Wed Apr 1 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99738 * 2 1 4 4 H 1.48499 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47387 * 299.99976 * 3 2 1 6 6 H 1.48500 * 109.47260 * 59.99991 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99646 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99949 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46937 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99959 * 169.99823 * 10 9 7 12 12 C 1.53235 * 109.34393 * 187.25283 * 11 10 9 13 13 N 1.47082 * 108.52129 * 306.17112 * 12 11 10 14 14 C 1.34774 * 120.88525 * 231.18383 * 13 12 11 15 15 O 1.21649 * 120.00467 * 180.21871 * 14 13 12 16 16 C 1.47000 * 119.99418 * 0.22153 * 14 13 12 17 17 C 1.35904 * 125.44305 * 151.58332 * 16 14 13 18 18 C 1.41438 * 107.59000 * 179.97438 * 17 16 14 19 19 C 1.40965 * 107.16162 * 0.02562 * 18 17 16 20 20 N 1.32713 * 119.94086 * 180.02562 * 19 18 17 21 21 C 1.31611 * 121.73853 * 359.97438 * 20 19 18 22 22 C 1.38635 * 121.58474 * 359.68038 * 21 20 19 23 23 C 1.38231 * 119.47682 * 0.61839 * 22 21 20 24 24 Cl 1.73596 * 120.96516 * 179.69355 * 23 22 21 25 25 N 1.37217 * 107.21326 * 359.97438 * 19 18 17 26 26 H 0.97000 * 125.53443 * 180.02562 * 25 19 18 27 27 C 1.47082 * 118.23527 * 51.45178 * 13 12 11 28 28 C 1.46899 * 110.99770 * 294.29894 * 10 9 7 29 29 H 0.96990 * 120.00069 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47227 * 60.00005 * 9 7 2 31 31 H 1.08997 * 109.46828 * 299.99725 * 9 7 2 32 32 H 1.09003 * 109.49242 * 67.29094 * 11 10 9 33 33 H 1.09005 * 109.49367 * 307.21653 * 11 10 9 34 34 H 1.08994 * 109.63205 * 186.46407 * 12 11 10 35 35 H 1.09002 * 109.62895 * 65.87752 * 12 11 10 36 36 H 1.07999 * 126.20487 * 359.97438 * 17 16 14 37 37 H 1.08014 * 119.20773 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.26095 * 180.33715 * 22 21 20 39 39 H 1.09003 * 109.62776 * 68.25327 * 27 13 12 40 40 H 1.09000 * 109.62908 * 188.83173 * 27 13 12 41 41 H 1.08996 * 109.49299 * 292.70781 * 28 10 9 42 42 H 1.08995 * 109.49192 * 52.78961 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.2059 -3.6157 0.0005 11 6 1.5215 -4.8934 0.2387 12 6 2.5640 -6.0031 0.4115 13 7 3.4619 -5.9862 -0.7534 14 6 3.7122 -7.1122 -1.4503 15 8 4.4606 -7.0807 -2.4088 16 6 3.0808 -8.3786 -1.0521 17 6 2.7840 -9.4082 -1.8880 18 6 2.1900 -10.4309 -1.1122 19 6 2.1441 -9.9697 0.2191 20 7 1.6291 -10.7396 1.1694 21 6 1.1518 -11.9377 0.9070 22 6 1.1565 -12.4555 -0.3791 23 6 1.6854 -11.7051 -1.4125 24 17 1.7182 -12.3188 -3.0360 25 7 2.6943 -8.7127 0.2325 26 1 2.7957 -8.1501 1.0161 27 6 4.0839 -4.7089 -1.1339 28 6 2.9769 -3.6490 -1.2494 29 1 -0.4850 0.8400 -0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6243 -2.5567 0.8903 32 1 0.8798 -5.1263 -0.6111 33 1 0.9163 -4.8190 1.1422 34 1 2.0635 -6.9693 0.4739 35 1 3.1397 -5.8264 1.3201 36 1 2.9682 -9.4398 -2.9517 37 1 0.7423 -12.5300 1.7121 38 1 0.7544 -13.4393 -0.5712 39 1 4.8029 -4.4101 -0.3710 40 1 4.5888 -4.8190 -2.0937 41 1 2.3150 -3.8992 -2.0785 42 1 3.4272 -2.6721 -1.4251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153023158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:46 Heat of formation + Delta-G solvation = 62.762254 kcal Electronic energy + Delta-G solvation = -27548.980197 eV Core-core repulsion = 23556.472058 eV Total energy + Delta-G solvation = -3992.508140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35599 -40.10860 -38.22007 -37.63191 -37.02336 -34.70159 -33.22093 -32.50176 -31.38762 -30.47032 -29.88767 -28.37117 -25.90817 -24.94443 -23.50606 -23.16994 -22.37937 -21.54309 -20.72284 -19.66229 -18.44584 -17.86115 -16.77387 -16.47345 -16.24860 -15.84786 -15.80016 -15.13243 -14.99581 -14.70123 -14.59279 -14.25398 -13.94149 -13.76033 -13.70314 -13.55543 -13.24166 -13.06099 -12.91789 -12.46140 -12.24301 -12.03339 -11.43675 -11.38841 -11.32983 -10.96623 -10.87879 -10.70485 -10.66371 -10.47094 -10.23580 -9.99254 -9.94071 -9.35725 -9.00857 -8.78276 -8.54006 -8.43587 -7.46819 -6.12585 -4.14879 0.13294 0.82916 1.56574 1.69726 2.15396 2.69001 3.05092 3.25254 3.32349 3.33244 3.37166 4.00481 4.08344 4.26667 4.32567 4.40729 4.55756 4.63600 4.91527 4.92596 5.09263 5.15594 5.23515 5.24590 5.28991 5.43813 5.52989 5.62147 5.72413 5.81669 5.85405 5.87139 6.03417 6.17393 6.30041 6.39127 6.53849 6.70632 7.10476 7.15579 7.22014 7.48383 7.65765 7.87529 7.90178 8.01743 8.37447 8.92408 9.50194 10.98270 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.002206 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.706165 B =12691.693218 C =13168.279846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.042 3.958 12 C 0.089 3.911 13 N -0.599 5.599 14 C 0.580 3.420 15 O -0.522 6.522 16 C 0.048 3.952 17 C -0.102 4.102 18 C -0.155 4.155 19 C 0.306 3.694 20 N -0.491 5.491 21 C 0.162 3.838 22 C -0.196 4.196 23 C 0.061 3.939 24 Cl -0.046 7.046 25 N -0.561 5.561 26 H 0.431 0.569 27 C 0.115 3.885 28 C 0.050 3.950 29 H 0.262 0.738 30 H -0.008 1.008 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.150 0.850 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.028 0.972 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 -25.405 0.034 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.087 4.087 12 C -0.034 4.034 13 N -0.331 5.331 14 C 0.367 3.633 15 O -0.398 6.398 16 C -0.062 4.062 17 C -0.129 4.129 18 C -0.163 4.163 19 C 0.071 3.929 20 N -0.204 5.204 21 C -0.006 4.006 22 C -0.218 4.218 23 C 0.025 3.975 24 Cl -0.017 7.017 25 N -0.174 5.174 26 H 0.277 0.723 27 C -0.006 4.006 28 C -0.079 4.079 29 H 0.071 0.929 30 H 0.010 0.990 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.180 0.820 37 H 0.191 0.809 38 H 0.167 0.833 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.046 0.954 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.470 -24.651 0.687 24.903 hybrid contribution -0.368 0.699 -1.101 1.355 sum 3.102 -23.951 -0.414 24.155 Atomic orbital electron populations 1.69960 1.06110 1.26860 1.50709 1.24999 0.94875 0.99432 0.95262 0.86429 0.80057 0.83295 0.77576 1.19598 1.21064 1.20969 1.21154 0.93521 0.89774 1.50463 0.91693 1.19739 0.89951 0.87108 0.96293 1.62112 1.27981 1.02409 1.33515 1.22343 0.94459 0.90617 1.01329 1.22442 0.92487 0.99910 0.88571 1.48210 1.46175 1.08836 1.29899 1.17120 0.81253 0.81805 0.83140 1.90857 1.36322 1.85035 1.27544 1.20257 1.05206 0.97114 0.83589 1.20784 1.01474 0.90514 1.00086 1.18560 1.07441 0.95263 0.95008 1.18324 0.97525 0.87409 0.89609 1.66549 1.12960 1.05941 1.34989 1.22578 0.93323 0.89398 0.95317 1.21852 1.04946 1.02346 0.92646 1.20810 0.97314 0.92193 0.87147 1.98403 1.96648 1.86729 1.19943 1.42631 1.51771 1.13354 1.09670 0.72319 1.22090 0.95929 0.80738 1.01861 1.22451 0.95055 0.99227 0.91192 0.92855 0.98995 0.94975 0.95187 0.89724 0.89905 0.89781 0.81968 0.80928 0.83251 0.90304 0.88863 0.95414 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.62 8.41 -34.44 -0.29 -13.91 16 8 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 9 C 0.19 4.76 4.72 -4.97 -0.02 4.73 16 10 N -0.53 -10.51 4.62 -235.48 -1.09 -11.60 16 11 C 0.04 0.67 5.62 -3.71 -0.02 0.65 16 12 C 0.09 1.11 5.60 -3.60 -0.02 1.09 16 13 N -0.60 -8.37 3.00 -173.60 -0.52 -8.89 16 14 C 0.58 8.35 7.63 -12.71 -0.10 8.25 16 15 O -0.52 -8.89 16.42 5.23 0.09 -8.80 16 16 C 0.05 0.59 6.31 -82.26 -0.52 0.07 16 17 C -0.10 -1.22 10.55 -39.20 -0.41 -1.63 16 18 C -0.15 -1.74 6.06 -106.87 -0.65 -2.38 16 19 C 0.31 3.46 8.40 -155.77 -1.31 2.15 16 20 N -0.49 -5.09 10.39 -12.26 -0.13 -5.22 16 21 C 0.16 1.20 11.15 -17.50 -0.20 1.00 16 22 C -0.20 -1.40 9.91 -39.44 -0.39 -1.80 16 23 C 0.06 0.58 6.41 -38.81 -0.25 0.33 16 24 Cl -0.05 -0.40 28.96 -51.86 -1.50 -1.91 16 25 N -0.56 -6.00 4.79 -8.85 -0.04 -6.05 16 26 H 0.43 3.88 6.37 -40.82 -0.26 3.62 16 27 C 0.12 1.73 6.63 -3.36 -0.02 1.71 16 28 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 31 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.29 7.99 -51.93 -0.41 0.88 16 34 H 0.08 0.87 4.02 -51.93 -0.21 0.66 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 1.95 6.67 -51.93 -0.35 1.60 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -31.64 361.04 -11.25 -42.89 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.90 Total: 0.76 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -4.31 Total: 2.58 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -1.04 Total: -56.91 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.64 -11.25 -42.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153023158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.651 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds