Wall clock time and date at job start Wed Apr 1 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99738 * 2 1 4 4 H 1.48499 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47387 * 299.99976 * 3 2 1 6 6 H 1.48500 * 109.47260 * 59.99991 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99646 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99949 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46937 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99959 * 169.99823 * 10 9 7 12 12 C 1.53235 * 109.34393 * 187.25283 * 11 10 9 13 13 N 1.47082 * 108.52129 * 306.17112 * 12 11 10 14 14 C 1.34774 * 120.88525 * 231.18383 * 13 12 11 15 15 O 1.21649 * 120.00467 * 180.21871 * 14 13 12 16 16 C 1.47000 * 119.99418 * 0.22153 * 14 13 12 17 17 C 1.35904 * 125.44305 * 151.58332 * 16 14 13 18 18 C 1.41438 * 107.59000 * 179.97438 * 17 16 14 19 19 C 1.40965 * 107.16162 * 0.02562 * 18 17 16 20 20 N 1.32713 * 119.94086 * 180.02562 * 19 18 17 21 21 C 1.31611 * 121.73853 * 359.97438 * 20 19 18 22 22 C 1.38635 * 121.58474 * 359.68038 * 21 20 19 23 23 C 1.38231 * 119.47682 * 0.61839 * 22 21 20 24 24 Cl 1.73596 * 120.96516 * 179.69355 * 23 22 21 25 25 N 1.37217 * 107.21326 * 359.97438 * 19 18 17 26 26 H 0.97000 * 125.53443 * 180.02562 * 25 19 18 27 27 C 1.47082 * 118.23527 * 51.45178 * 13 12 11 28 28 C 1.46899 * 110.99770 * 294.29894 * 10 9 7 29 29 H 0.96990 * 120.00069 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47227 * 60.00005 * 9 7 2 31 31 H 1.08997 * 109.46828 * 299.99725 * 9 7 2 32 32 H 1.09003 * 109.49242 * 67.29094 * 11 10 9 33 33 H 1.09005 * 109.49367 * 307.21653 * 11 10 9 34 34 H 1.08994 * 109.63205 * 186.46407 * 12 11 10 35 35 H 1.09002 * 109.62895 * 65.87752 * 12 11 10 36 36 H 1.07999 * 126.20487 * 359.97438 * 17 16 14 37 37 H 1.08014 * 119.20773 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.26095 * 180.33715 * 22 21 20 39 39 H 1.09003 * 109.62776 * 68.25327 * 27 13 12 40 40 H 1.09000 * 109.62908 * 188.83173 * 27 13 12 41 41 H 1.08996 * 109.49299 * 292.70781 * 28 10 9 42 42 H 1.08995 * 109.49192 * 52.78961 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.2059 -3.6157 0.0005 11 6 1.5215 -4.8934 0.2387 12 6 2.5640 -6.0031 0.4115 13 7 3.4619 -5.9862 -0.7534 14 6 3.7122 -7.1122 -1.4503 15 8 4.4606 -7.0807 -2.4088 16 6 3.0808 -8.3786 -1.0521 17 6 2.7840 -9.4082 -1.8880 18 6 2.1900 -10.4309 -1.1122 19 6 2.1441 -9.9697 0.2191 20 7 1.6291 -10.7396 1.1694 21 6 1.1518 -11.9377 0.9070 22 6 1.1565 -12.4555 -0.3791 23 6 1.6854 -11.7051 -1.4125 24 17 1.7182 -12.3188 -3.0360 25 7 2.6943 -8.7127 0.2325 26 1 2.7957 -8.1501 1.0161 27 6 4.0839 -4.7089 -1.1339 28 6 2.9769 -3.6490 -1.2494 29 1 -0.4850 0.8400 -0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6243 -2.5567 0.8903 32 1 0.8798 -5.1263 -0.6111 33 1 0.9163 -4.8190 1.1422 34 1 2.0635 -6.9693 0.4739 35 1 3.1397 -5.8264 1.3201 36 1 2.9682 -9.4398 -2.9517 37 1 0.7423 -12.5300 1.7121 38 1 0.7544 -13.4393 -0.5712 39 1 4.8029 -4.4101 -0.3710 40 1 4.5888 -4.8190 -2.0937 41 1 2.3150 -3.8992 -2.0785 42 1 3.4272 -2.6721 -1.4251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153023158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:45 Heat of formation + Delta-G solvation = 42.634534 kcal Electronic energy + Delta-G solvation = -27549.853001 eV Core-core repulsion = 23556.472058 eV Total energy + Delta-G solvation = -3993.380943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.17947 -41.20765 -39.24762 -38.77925 -37.70582 -36.18726 -34.48051 -33.95350 -32.53253 -31.34134 -30.88717 -29.89338 -27.49839 -26.00946 -24.62761 -24.22440 -23.72045 -22.75056 -21.80747 -20.80920 -19.28652 -18.94910 -18.48023 -17.59149 -17.24299 -16.91732 -16.71982 -16.57382 -16.10942 -16.03084 -15.80118 -15.49578 -15.25921 -15.05612 -14.70801 -14.45733 -14.35948 -14.10573 -13.97642 -13.63560 -13.51656 -13.13780 -13.05160 -12.81626 -12.63996 -12.41411 -12.39965 -12.24776 -12.08816 -11.81761 -11.47730 -11.29230 -11.19211 -10.66796 -10.64310 -10.03286 -9.70211 -9.30278 -9.13348 -8.22759 -6.32567 -0.64167 0.14856 0.78673 0.88947 1.32299 1.41159 1.42387 1.55127 1.59361 2.01980 2.39165 2.63497 3.06792 3.08635 3.15135 3.41551 3.50126 3.68591 3.71460 3.88892 3.95416 4.04099 4.14545 4.29215 4.30815 4.38669 4.52682 4.54617 4.58418 4.71933 4.85741 4.87825 4.91902 5.02557 5.08814 5.14186 5.18560 5.30053 5.53575 5.61849 5.96416 5.99419 6.03925 6.21529 6.50906 6.73035 6.80821 6.83232 7.37515 8.88680 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.002206 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.706165 B =12691.693218 C =13168.279846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.521 4.521 8 H 0.068 0.932 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.039 3.961 12 C 0.101 3.899 13 N -0.601 5.601 14 C 0.585 3.415 15 O -0.553 6.553 16 C 0.031 3.969 17 C -0.102 4.102 18 C -0.175 4.175 19 C 0.296 3.704 20 N -0.511 5.511 21 C 0.172 3.828 22 C -0.182 4.182 23 C 0.049 3.951 24 Cl -0.045 7.045 25 N -0.554 5.554 26 H 0.437 0.563 27 C 0.127 3.873 28 C 0.054 3.946 29 H 0.264 0.736 30 H -0.041 1.041 31 H 0.011 0.989 32 H 0.018 0.982 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.161 0.839 37 H 0.215 0.785 38 H 0.183 0.817 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.012 0.988 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -27.520 1.299 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.082 3.918 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.022 4.022 13 N -0.332 5.332 14 C 0.373 3.627 15 O -0.431 6.431 16 C -0.078 4.078 17 C -0.129 4.129 18 C -0.183 4.183 19 C 0.062 3.938 20 N -0.225 5.225 21 C 0.005 3.995 22 C -0.204 4.204 23 C 0.013 3.987 24 Cl -0.015 7.015 25 N -0.169 5.169 26 H 0.284 0.716 27 C 0.005 3.995 28 C -0.075 4.075 29 H 0.073 0.927 30 H -0.024 1.024 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.179 0.821 37 H 0.232 0.768 38 H 0.200 0.800 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.030 0.970 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.984 -26.784 1.969 27.151 hybrid contribution -0.631 1.144 -1.488 1.980 sum 3.353 -25.640 0.481 25.863 Atomic orbital electron populations 1.70085 1.07768 1.27867 1.51840 1.25904 0.95693 1.03216 0.94842 0.85345 0.79137 0.78656 0.77556 1.18446 1.20781 1.20503 1.21484 0.93795 0.90795 1.49875 0.91398 1.19381 0.90009 0.88747 0.93628 1.62028 1.27002 1.02788 1.34208 1.22463 0.95506 0.89888 1.01130 1.22466 0.91620 0.99406 0.88686 1.48231 1.46273 1.08450 1.30289 1.17301 0.80652 0.82326 0.82401 1.90832 1.37783 1.85645 1.28880 1.19842 1.06915 0.96464 0.84599 1.20889 1.01045 0.90773 1.00178 1.18679 1.08555 0.96063 0.95013 1.18491 0.97808 0.87563 0.89937 1.66663 1.13894 1.07064 1.34910 1.23396 0.91138 0.88456 0.96559 1.22290 1.03084 1.03192 0.91835 1.21052 0.97696 0.92023 0.87920 1.98404 1.96647 1.86525 1.19973 1.42457 1.51674 1.13565 1.09189 0.71613 1.21898 0.94706 0.80264 1.02636 1.22395 0.95392 0.99742 0.89986 0.92711 1.02375 0.97078 0.96421 0.88959 0.87675 0.87642 0.82110 0.76840 0.79971 0.88942 0.88619 0.96977 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.25 13.29 21.45 0.28 -54.96 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.52 -28.34 8.41 25.60 0.22 -28.12 16 8 H 0.07 3.58 7.13 -2.91 -0.02 3.56 16 9 C 0.21 10.64 4.72 85.56 0.40 11.05 16 10 N -0.54 -21.43 4.62 -898.91 -4.15 -25.58 16 11 C 0.04 1.26 5.62 86.38 0.49 1.74 16 12 C 0.10 2.38 5.60 86.35 0.48 2.86 16 13 N -0.60 -16.44 3.00 -821.40 -2.47 -18.91 16 14 C 0.59 16.72 7.63 86.54 0.66 17.38 16 15 O -0.55 -19.02 16.42 -4.19 -0.07 -19.09 16 16 C 0.03 0.76 6.31 39.89 0.25 1.01 16 17 C -0.10 -2.41 10.55 22.52 0.24 -2.17 16 18 C -0.18 -3.73 6.06 -21.32 -0.13 -3.86 16 19 C 0.30 6.22 8.40 134.02 1.13 7.35 16 20 N -0.51 -9.27 10.39 -192.71 -2.00 -11.28 16 21 C 0.17 1.89 11.15 84.82 0.95 2.84 16 22 C -0.18 -1.98 9.91 22.36 0.22 -1.75 16 23 C 0.05 0.82 6.41 22.77 0.15 0.97 16 24 Cl -0.04 -0.72 28.96 -2.72 -0.08 -0.79 16 25 N -0.55 -11.21 4.79 -181.92 -0.87 -12.08 16 26 H 0.44 7.15 6.37 -92.71 -0.59 6.56 16 27 C 0.13 3.77 6.63 86.50 0.57 4.34 16 28 C 0.05 1.99 5.47 86.54 0.47 2.47 16 29 H 0.26 14.68 8.31 -92.72 -0.77 13.91 16 30 H -0.04 -2.36 8.12 -2.39 -0.02 -2.37 16 31 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 2.80 7.99 -2.38 -0.02 2.78 16 34 H 0.11 2.06 4.02 -2.39 -0.01 2.05 16 35 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 36 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 37 H 0.22 0.46 8.06 -2.90 -0.02 0.43 16 38 H 0.18 0.74 8.06 -2.91 -0.02 0.71 16 39 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.10 2.83 7.06 -2.39 -0.02 2.82 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.09 3.41 6.67 -2.39 -0.02 3.39 16 Total: -1.00 -70.34 361.04 -0.28 -70.63 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.49 Total: 10.17 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 6.56 Total: 16.65 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -9.21 Total: -122.81 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.07 Total: -19.09 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.79 kcal Total: -70.34 -0.28 -70.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153023158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.260 kcal (2) G-P(sol) polarization free energy of solvation -70.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds