Wall clock time and date at job start Wed Apr 1 2020 04:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00158 * 224.05013 * 3 2 1 5 5 N 3.51033 * 140.69127 * 224.05412 * 2 1 3 6 6 C 1.41124 * 119.99814 * 44.05511 * 3 2 1 7 7 C 1.38934 * 119.99930 * 185.43330 * 6 3 2 8 8 H 1.07999 * 120.00020 * 339.58842 * 7 6 3 9 9 C 1.40869 * 120.00221 * 159.31036 * 7 6 3 10 10 N 1.30322 * 119.99884 * 350.11368 * 9 7 6 11 11 Si 1.86802 * 120.00333 * 170.10567 * 9 7 6 12 12 H 1.48499 * 109.46849 * 60.00047 * 11 9 7 13 13 H 1.48491 * 109.47217 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47035 * 300.00668 * 11 9 7 15 15 N 1.38471 * 120.00056 * 5.43173 * 6 3 2 16 16 C 1.38551 * 120.00082 * 119.74974 * 15 6 3 17 17 N 1.31871 * 118.67796 * 354.72509 * 16 15 6 18 18 C 1.33847 * 120.20854 * 179.97438 * 17 16 15 19 19 C 1.40273 * 121.97560 * 180.02562 * 18 17 16 20 20 C 1.36234 * 119.58987 * 179.97438 * 19 18 17 21 21 C 1.39324 * 121.08050 * 0.05210 * 20 19 18 22 22 C 1.36251 * 120.96099 * 359.94826 * 21 20 19 23 23 C 1.40249 * 119.49984 * 0.02818 * 22 21 20 24 24 C 1.40709 * 122.04107 * 180.02562 * 23 22 21 25 25 C 1.50703 * 120.76932 * 359.97438 * 24 23 22 26 26 C 1.50694 * 109.47114 * 89.99957 * 25 24 23 27 27 N 1.34777 * 120.00108 * 180.02562 * 26 25 24 28 28 O 1.21288 * 119.99839 * 0.02562 * 26 25 24 29 29 N 1.31660 * 118.46960 * 179.72826 * 24 23 22 30 30 H 0.97001 * 120.00125 * 185.05345 * 10 9 7 31 31 H 0.97005 * 120.00188 * 299.73926 * 15 6 3 32 32 H 1.07995 * 120.20245 * 359.97438 * 19 18 17 33 33 H 1.08005 * 119.46085 * 180.02562 * 20 19 18 34 34 H 1.08002 * 119.51970 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.25016 * 180.02562 * 22 21 20 36 36 H 1.08996 * 109.47298 * 210.00414 * 25 24 23 37 37 H 1.09002 * 109.46447 * 330.00196 * 25 24 23 38 38 H 0.97004 * 119.99816 * 359.97438 * 27 26 25 39 39 H 0.97004 * 119.99979 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2837 0.8923 0.8622 5 7 3.8521 1.5982 1.5463 6 6 3.2740 -0.8774 -0.8499 7 6 4.6587 -0.9580 -0.7699 8 1 5.2216 -0.1520 -0.3228 9 6 5.3281 -2.0935 -1.2667 10 7 4.6482 -3.1466 -1.6232 11 14 7.1902 -2.0899 -1.4147 12 1 7.7928 -1.8760 -0.0744 13 1 7.6460 -3.3935 -1.9605 14 1 7.6121 -0.9969 -2.3272 15 7 2.5866 -1.6587 -1.7634 16 6 2.8424 -1.5267 -3.1187 17 7 3.6668 -0.5780 -3.5177 18 6 3.9361 -0.4235 -4.8197 19 6 4.8073 0.5725 -5.2850 20 6 5.0471 0.6860 -6.6212 21 6 4.4399 -0.1714 -7.5363 22 6 3.5880 -1.1503 -7.1210 23 6 3.3184 -1.2964 -5.7524 24 6 2.4483 -2.2888 -5.2647 25 6 1.7636 -3.2448 -6.2073 26 6 2.6284 -4.4633 -6.4028 27 7 2.2160 -5.4596 -7.2114 28 8 3.6955 -4.5475 -5.8324 29 7 2.2499 -2.3663 -3.9655 30 1 5.1118 -3.9539 -1.8957 31 1 1.9262 -2.2984 -1.4545 32 1 5.2850 1.2453 -4.5882 33 1 5.7187 1.4534 -6.9771 34 1 4.6477 -0.0586 -8.5901 35 1 3.1239 -1.8089 -7.8403 36 1 0.8035 -3.5442 -5.7871 37 1 1.6031 -2.7553 -7.1679 38 1 1.3624 -5.3925 -7.6672 39 1 2.7726 -6.2442 -7.3369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:21 Heat of formation + Delta-G solvation = 96.485422 kcal Electronic energy + Delta-G solvation = -29555.582717 eV Core-core repulsion = 25463.429430 eV Total energy + Delta-G solvation = -4092.153287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.108 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.07338 -39.39892 -38.10494 -36.69281 -35.19665 -34.64000 -34.27663 -33.83033 -33.32920 -31.49087 -30.43034 -29.62441 -28.38173 -27.03096 -24.08992 -23.43183 -21.94718 -21.46274 -20.37827 -19.04473 -18.63806 -17.74015 -17.47226 -17.05577 -16.92239 -16.29017 -15.99488 -15.46123 -15.23134 -14.82844 -14.58058 -14.17717 -13.89209 -13.77848 -13.57508 -13.24689 -12.71537 -12.53708 -12.28522 -12.23594 -12.14206 -12.10764 -11.70419 -11.60992 -11.47927 -11.44972 -11.38476 -10.98559 -10.83811 -10.75000 -10.50815 -10.39570 -10.06910 -10.00059 -9.88117 -9.57227 -8.67498 -8.57103 -8.04595 -7.67111 -6.95277 -5.31364 0.63393 1.26296 2.18497 2.28898 2.50572 2.77963 2.83135 2.93578 3.29579 3.46206 3.48012 3.54641 3.95208 4.13869 4.21407 4.33896 4.38867 4.55144 4.59328 4.82001 4.86228 4.97430 5.12202 5.12608 5.27897 5.29246 5.39706 5.57727 5.68780 5.87010 5.95660 6.19660 6.30370 6.38494 6.44527 6.56498 6.60403 6.63532 6.97701 7.08722 7.14060 7.27350 7.55463 7.69633 7.84687 8.09801 8.14468 8.32702 8.99531 9.06823 9.22744 9.29538 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.009532 B = 0.004393 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.752919 B = 6372.780949 C = 6672.537402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C 0.311 3.689 3 C -0.315 4.315 4 C 0.329 3.671 5 N -0.537 5.537 6 C 0.387 3.613 7 C -0.342 4.342 8 H 0.112 0.888 9 C 0.073 3.927 10 N -0.719 5.719 11 Si 0.923 3.077 12 H -0.252 1.252 13 H -0.270 1.270 14 H -0.249 1.249 15 N -0.610 5.610 16 C 0.612 3.388 17 N -0.541 5.541 18 C 0.215 3.785 19 C -0.114 4.114 20 C -0.080 4.080 21 C -0.155 4.155 22 C -0.060 4.060 23 C -0.207 4.207 24 C 0.268 3.732 25 C -0.098 4.098 26 C 0.524 3.476 27 N -0.858 5.858 28 O -0.520 6.520 29 N -0.541 5.541 30 H 0.303 0.697 31 H 0.413 0.587 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.401 0.599 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -7.053 -19.642 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.222 5.222 2 C 0.004 3.996 3 C -0.334 4.334 4 C 0.021 3.979 5 N -0.220 5.220 6 C 0.283 3.717 7 C -0.370 4.370 8 H 0.129 0.871 9 C -0.159 4.159 10 N -0.337 5.337 11 Si 0.744 3.256 12 H -0.176 1.176 13 H -0.195 1.195 14 H -0.173 1.173 15 N -0.236 5.236 16 C 0.256 3.744 17 N -0.265 5.265 18 C 0.083 3.917 19 C -0.134 4.134 20 C -0.101 4.101 21 C -0.174 4.174 22 C -0.080 4.080 23 C -0.214 4.214 24 C 0.103 3.897 25 C -0.139 4.139 26 C 0.307 3.693 27 N -0.423 5.423 28 O -0.394 6.394 29 N -0.259 5.259 30 H 0.115 0.885 31 H 0.251 0.749 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.229 0.771 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.237 -6.002 -16.998 18.028 hybrid contribution 0.666 -1.134 -1.450 1.958 sum 0.904 -7.135 -18.448 19.801 Atomic orbital electron populations 1.81050 1.12368 1.14336 1.14478 1.25199 0.91826 0.91407 0.91175 1.12775 0.82156 1.18677 1.19803 1.24591 0.91944 0.90781 0.90554 1.81026 1.09614 1.15573 1.15751 1.16524 0.89269 0.82589 0.83284 1.20186 0.91943 1.01466 1.23374 0.87053 1.26527 1.03776 0.94664 0.90951 1.69439 1.40875 1.02181 1.21194 0.86023 0.78873 0.79752 0.80951 1.17597 1.19462 1.17270 1.40826 1.41668 1.41144 0.99989 1.18681 0.85360 0.84483 0.85863 1.68500 1.19815 1.23145 1.15062 1.18710 0.92663 0.92580 0.87761 1.20700 0.98664 0.98279 0.95720 1.20873 0.98171 0.98255 0.92844 1.20687 0.99891 0.97350 0.99500 1.20703 0.96950 0.96979 0.93418 1.19011 1.04823 1.01791 0.95779 1.20683 0.89296 0.90134 0.89571 1.20618 1.00119 0.93198 0.99947 1.20213 0.86585 0.84120 0.78411 1.43798 1.25410 1.22531 1.50581 1.90855 1.22852 1.79455 1.46256 1.67242 1.28721 1.26643 1.03285 0.88467 0.74865 0.84587 0.85739 0.86181 0.86237 0.86089 0.86556 0.77117 0.76686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -13.14 18.54 41.84 0.78 -12.37 16 2 C 0.31 7.36 14.81 -22.47 -0.33 7.03 16 3 C -0.32 -7.32 5.88 -104.95 -0.62 -7.94 16 4 C 0.33 7.90 13.90 -22.49 -0.31 7.58 16 5 N -0.54 -13.26 18.53 41.82 0.78 -12.48 16 6 C 0.39 8.72 5.42 -83.51 -0.45 8.26 16 7 C -0.34 -7.64 7.79 -38.33 -0.30 -7.93 16 8 H 0.11 2.51 7.00 -52.49 -0.37 2.14 16 9 C 0.07 1.53 4.95 -17.20 -0.09 1.45 16 10 N -0.72 -15.43 11.01 55.60 0.61 -14.82 16 11 Si 0.92 16.86 29.58 -169.99 -5.03 11.83 16 12 H -0.25 -4.51 7.11 56.52 0.40 -4.11 16 13 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 14 H -0.25 -4.62 7.11 56.52 0.40 -4.22 16 15 N -0.61 -13.11 3.32 -11.38 -0.04 -13.15 16 16 C 0.61 12.99 6.81 -322.55 -2.20 10.80 16 17 N -0.54 -11.56 8.82 -11.90 -0.10 -11.66 16 18 C 0.22 4.03 6.62 -84.83 -0.56 3.47 16 19 C -0.11 -1.80 10.01 -39.54 -0.40 -2.20 16 20 C -0.08 -0.99 9.95 -39.90 -0.40 -1.39 16 21 C -0.16 -1.77 9.95 -39.89 -0.40 -2.16 16 22 C -0.06 -0.75 9.33 -39.54 -0.37 -1.11 16 23 C -0.21 -3.37 5.74 -106.81 -0.61 -3.98 16 24 C 0.27 4.31 5.39 -81.73 -0.44 3.87 16 25 C -0.10 -1.01 5.61 -29.04 -0.16 -1.18 16 26 C 0.52 6.06 8.09 -10.99 -0.09 5.97 16 27 N -0.86 -5.51 8.87 31.22 0.28 -5.23 16 28 O -0.52 -9.05 16.87 5.55 0.09 -8.96 16 29 N -0.54 -10.40 10.34 -9.72 -0.10 -10.50 16 30 H 0.30 6.24 8.29 -40.82 -0.34 5.90 16 31 H 0.41 8.60 8.91 -40.82 -0.36 8.23 16 32 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.08 6.52 -52.49 -0.34 0.74 16 36 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.12 0.75 6.56 -51.93 -0.34 0.41 16 38 H 0.40 1.09 8.83 -40.82 -0.36 0.73 16 39 H 0.40 2.36 8.93 -40.82 -0.36 2.00 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -32.49 364.80 -7.93 -40.41 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -2.96 Total: 10.91 kcal Atomic # 6 Polarization: 28.24 SS G_CDS: -7.72 Total: 20.52 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: 2.20 Total: -80.22 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.49 -7.93 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.899 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds