Wall clock time and date at job start Wed Apr 1 2020 04:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00158 * 224.05013 * 3 2 1 5 5 N 3.51033 * 140.69127 * 224.05412 * 2 1 3 6 6 C 1.41124 * 119.99814 * 44.05511 * 3 2 1 7 7 C 1.38934 * 119.99930 * 185.43330 * 6 3 2 8 8 H 1.07999 * 120.00020 * 339.58842 * 7 6 3 9 9 C 1.40869 * 120.00221 * 159.31036 * 7 6 3 10 10 N 1.30322 * 119.99884 * 350.11368 * 9 7 6 11 11 Si 1.86802 * 120.00333 * 170.10567 * 9 7 6 12 12 H 1.48499 * 109.46849 * 60.00047 * 11 9 7 13 13 H 1.48491 * 109.47217 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47035 * 300.00668 * 11 9 7 15 15 N 1.38471 * 120.00056 * 5.43173 * 6 3 2 16 16 C 1.38551 * 120.00082 * 119.74974 * 15 6 3 17 17 N 1.31871 * 118.67796 * 354.72509 * 16 15 6 18 18 C 1.33847 * 120.20854 * 179.97438 * 17 16 15 19 19 C 1.40273 * 121.97560 * 180.02562 * 18 17 16 20 20 C 1.36234 * 119.58987 * 179.97438 * 19 18 17 21 21 C 1.39324 * 121.08050 * 0.05210 * 20 19 18 22 22 C 1.36251 * 120.96099 * 359.94826 * 21 20 19 23 23 C 1.40249 * 119.49984 * 0.02818 * 22 21 20 24 24 C 1.40709 * 122.04107 * 180.02562 * 23 22 21 25 25 C 1.50703 * 120.76932 * 359.97438 * 24 23 22 26 26 C 1.50694 * 109.47114 * 89.99957 * 25 24 23 27 27 N 1.34777 * 120.00108 * 180.02562 * 26 25 24 28 28 O 1.21288 * 119.99839 * 0.02562 * 26 25 24 29 29 N 1.31660 * 118.46960 * 179.72826 * 24 23 22 30 30 H 0.97001 * 120.00125 * 185.05345 * 10 9 7 31 31 H 0.97005 * 120.00188 * 299.73926 * 15 6 3 32 32 H 1.07995 * 120.20245 * 359.97438 * 19 18 17 33 33 H 1.08005 * 119.46085 * 180.02562 * 20 19 18 34 34 H 1.08002 * 119.51970 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.25016 * 180.02562 * 22 21 20 36 36 H 1.08996 * 109.47298 * 210.00414 * 25 24 23 37 37 H 1.09002 * 109.46447 * 330.00196 * 25 24 23 38 38 H 0.97004 * 119.99816 * 359.97438 * 27 26 25 39 39 H 0.97004 * 119.99979 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2837 0.8923 0.8622 5 7 3.8521 1.5982 1.5463 6 6 3.2740 -0.8774 -0.8499 7 6 4.6587 -0.9580 -0.7699 8 1 5.2216 -0.1520 -0.3228 9 6 5.3281 -2.0935 -1.2667 10 7 4.6482 -3.1466 -1.6232 11 14 7.1902 -2.0899 -1.4147 12 1 7.7928 -1.8760 -0.0744 13 1 7.6460 -3.3935 -1.9605 14 1 7.6121 -0.9969 -2.3272 15 7 2.5866 -1.6587 -1.7634 16 6 2.8424 -1.5267 -3.1187 17 7 3.6668 -0.5780 -3.5177 18 6 3.9361 -0.4235 -4.8197 19 6 4.8073 0.5725 -5.2850 20 6 5.0471 0.6860 -6.6212 21 6 4.4399 -0.1714 -7.5363 22 6 3.5880 -1.1503 -7.1210 23 6 3.3184 -1.2964 -5.7524 24 6 2.4483 -2.2888 -5.2647 25 6 1.7636 -3.2448 -6.2073 26 6 2.6284 -4.4633 -6.4028 27 7 2.2160 -5.4596 -7.2114 28 8 3.6955 -4.5475 -5.8324 29 7 2.2499 -2.3663 -3.9655 30 1 5.1118 -3.9539 -1.8957 31 1 1.9262 -2.2984 -1.4545 32 1 5.2850 1.2453 -4.5882 33 1 5.7187 1.4534 -6.9771 34 1 4.6477 -0.0586 -8.5901 35 1 3.1239 -1.8089 -7.8403 36 1 0.8035 -3.5442 -5.7871 37 1 1.6031 -2.7553 -7.1679 38 1 1.3624 -5.3925 -7.6672 39 1 2.7726 -6.2442 -7.3369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:20 Heat of formation + Delta-G solvation = 74.548832 kcal Electronic energy + Delta-G solvation = -29556.533959 eV Core-core repulsion = 25463.429430 eV Total energy + Delta-G solvation = -4093.104529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.108 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.28898 -40.36862 -39.51072 -38.10209 -36.94880 -36.55032 -35.59353 -34.89210 -34.61648 -32.86313 -31.69957 -30.80542 -29.55812 -28.80595 -25.28759 -24.72070 -23.14053 -22.85322 -21.48804 -20.61173 -19.94272 -19.13039 -18.56332 -18.27278 -17.89600 -17.78137 -17.34301 -16.81734 -16.32994 -15.98299 -15.86149 -15.35797 -15.16975 -14.93008 -14.67713 -14.59124 -14.41589 -14.25536 -13.94157 -13.50333 -13.46080 -13.40210 -13.24987 -13.21329 -13.16862 -12.96992 -12.73284 -12.66986 -12.45032 -12.18978 -11.91631 -11.62217 -11.57250 -11.06455 -10.95129 -10.61139 -10.01086 -9.86855 -9.58739 -9.22379 -8.43299 -7.13022 -0.50276 0.02515 0.62430 1.08151 1.24110 1.37534 1.44369 1.66148 1.92485 1.99467 2.06479 2.20435 2.27310 2.50606 2.62609 2.65487 3.15026 3.34571 3.41983 3.51434 3.66737 3.81011 3.89117 4.13037 4.19476 4.33912 4.35511 4.45645 4.54279 4.58235 4.60771 4.80736 4.92823 5.13970 5.32536 5.38752 5.44235 5.57240 5.66233 5.94412 5.95591 6.00285 6.06713 6.28985 6.50864 6.56518 6.73794 7.15697 7.31253 7.40733 7.59457 7.65038 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.009532 B = 0.004393 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.752919 B = 6372.780949 C = 6672.537402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C 0.317 3.683 3 C -0.328 4.328 4 C 0.332 3.668 5 N -0.555 5.555 6 C 0.385 3.615 7 C -0.345 4.345 8 H 0.104 0.896 9 C 0.048 3.952 10 N -0.724 5.724 11 Si 0.971 3.029 12 H -0.242 1.242 13 H -0.264 1.264 14 H -0.256 1.256 15 N -0.618 5.618 16 C 0.593 3.407 17 N -0.577 5.577 18 C 0.175 3.825 19 C -0.149 4.149 20 C -0.060 4.060 21 C -0.145 4.145 22 C -0.058 4.058 23 C -0.220 4.220 24 C 0.261 3.739 25 C -0.095 4.095 26 C 0.525 3.475 27 N -0.829 5.829 28 O -0.588 6.588 29 N -0.566 5.566 30 H 0.306 0.694 31 H 0.410 0.590 32 H 0.125 0.875 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.422 0.578 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 -7.972 -23.996 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.240 5.240 2 C 0.011 3.989 3 C -0.347 4.347 4 C 0.026 3.974 5 N -0.238 5.238 6 C 0.281 3.719 7 C -0.372 4.372 8 H 0.122 0.878 9 C -0.183 4.183 10 N -0.342 5.342 11 Si 0.789 3.211 12 H -0.165 1.165 13 H -0.187 1.187 14 H -0.180 1.180 15 N -0.246 5.246 16 C 0.237 3.763 17 N -0.302 5.302 18 C 0.045 3.955 19 C -0.169 4.169 20 C -0.081 4.081 21 C -0.163 4.163 22 C -0.078 4.078 23 C -0.226 4.226 24 C 0.098 3.902 25 C -0.135 4.135 26 C 0.309 3.691 27 N -0.395 5.395 28 O -0.468 6.468 29 N -0.285 5.285 30 H 0.118 0.882 31 H 0.248 0.752 32 H 0.143 0.857 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.179 0.821 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.254 0.746 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.613 -6.937 -21.453 22.555 hybrid contribution 0.572 -0.883 -0.414 1.131 sum 1.185 -7.821 -21.867 23.253 Atomic orbital electron populations 1.81021 1.12635 1.15085 1.15266 1.25247 0.91858 0.91013 0.90753 1.12855 0.81981 1.19332 1.20555 1.24723 0.91712 0.90611 0.90370 1.80998 1.10054 1.16257 1.16527 1.16539 0.89510 0.82579 0.83267 1.20301 0.92131 1.01650 1.23131 0.87771 1.27078 1.06729 0.93993 0.90463 1.69472 1.41929 1.02368 1.20407 0.85328 0.74979 0.79614 0.81142 1.16531 1.18750 1.17959 1.40697 1.42057 1.41439 1.00363 1.18795 0.86344 0.85381 0.85796 1.68402 1.20747 1.23932 1.17110 1.19236 0.94280 0.94417 0.87606 1.20820 0.99912 0.98734 0.97457 1.21356 0.97058 0.98317 0.91385 1.21261 0.97935 0.95601 1.01507 1.21197 0.96836 0.97668 0.92142 1.19380 1.04590 1.01287 0.97371 1.21634 0.88681 0.90553 0.89288 1.20842 0.99771 0.92044 1.00833 1.20374 0.85662 0.84983 0.78127 1.43558 1.26084 1.21193 1.48615 1.90843 1.25782 1.80872 1.49258 1.67308 1.29685 1.26854 1.04636 0.88220 0.75240 0.85733 0.82236 0.81580 0.82057 0.84203 0.81825 0.74551 0.75984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.89 18.54 19.01 0.35 -27.54 16 2 C 0.32 15.60 14.81 88.33 1.31 16.91 16 3 C -0.33 -15.93 5.88 -20.08 -0.12 -16.05 16 4 C 0.33 16.54 13.90 88.34 1.23 17.77 16 5 N -0.55 -28.13 18.53 19.00 0.35 -27.78 16 6 C 0.39 18.24 5.42 38.97 0.21 18.45 16 7 C -0.35 -16.04 7.79 23.08 0.18 -15.86 16 8 H 0.10 4.90 7.00 -2.91 -0.02 4.88 16 9 C 0.05 2.08 4.95 85.56 0.42 2.50 16 10 N -0.72 -32.02 11.01 21.98 0.24 -31.78 16 11 Si 0.97 34.84 29.58 68.60 2.03 36.87 16 12 H -0.24 -8.26 7.11 99.48 0.71 -7.56 16 13 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 14 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 15 N -0.62 -28.03 3.32 -189.92 -0.63 -28.66 16 16 C 0.59 26.32 6.81 261.39 1.78 28.10 16 17 N -0.58 -25.83 8.82 -191.55 -1.69 -27.52 16 18 C 0.17 6.65 6.62 40.24 0.27 6.92 16 19 C -0.15 -4.73 10.01 22.30 0.22 -4.50 16 20 C -0.06 -1.31 9.95 22.06 0.22 -1.09 16 21 C -0.14 -2.58 9.95 22.07 0.22 -2.36 16 22 C -0.06 -1.21 9.33 22.30 0.21 -1.00 16 23 C -0.22 -6.88 5.74 -21.28 -0.12 -7.01 16 24 C 0.26 8.18 5.39 43.19 0.23 8.41 16 25 C -0.10 -1.67 5.61 29.10 0.16 -1.50 16 26 C 0.52 10.79 8.09 87.66 0.71 11.50 16 27 N -0.83 -7.71 8.87 -173.53 -1.54 -9.25 16 28 O -0.59 -20.00 16.87 -3.05 -0.05 -20.06 16 29 N -0.57 -22.30 10.34 -184.66 -1.91 -24.21 16 30 H 0.31 12.87 8.29 -92.71 -0.77 12.10 16 31 H 0.41 18.19 8.91 -92.70 -0.83 17.36 16 32 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 33 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 34 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.16 1.91 6.52 -2.91 -0.02 1.89 16 36 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.16 1.20 6.56 -2.39 -0.02 1.18 16 38 H 0.42 0.38 8.83 -92.71 -0.82 -0.44 16 39 H 0.41 3.55 8.93 -92.71 -0.83 2.73 16 Total: -1.00 -76.98 364.80 3.02 -73.96 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -1.27 Total: 24.76 kcal Atomic # 6 Polarization: 54.07 SS G_CDS: 7.13 Total: 61.20 kcal Atomic # 7 Polarization: -171.91 SS G_CDS: -4.82 Total: -176.73 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.06 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Total: -76.98 3.02 -73.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.511 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds