Wall clock time and date at job start Wed Apr 1 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.47392 * 126.81291 * 140.07251 * 3 2 1 5 5 C 1.40848 * 126.46907 * 0.02562 * 4 3 2 6 6 H 1.07996 * 120.00337 * 0.02562 * 5 4 3 7 7 C 1.40006 * 119.99725 * 179.97438 * 5 4 3 8 8 N 1.30815 * 120.00226 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00106 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47000 * 59.99903 * 9 7 5 11 11 H 1.48501 * 109.47427 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47202 * 300.00322 * 9 7 5 13 13 N 1.32790 * 107.05874 * 179.97438 * 4 3 2 14 14 N 1.39763 * 109.15747 * 0.02562 * 13 4 3 15 15 C 1.39776 * 125.18747 * 179.97438 * 14 13 4 16 16 C 1.38974 * 120.07774 * 139.48170 * 15 14 13 17 17 C 1.38088 * 119.91996 * 179.72354 * 16 15 14 18 18 C 1.38317 * 120.07636 * 0.57593 * 17 16 15 19 19 C 1.38315 * 120.15843 * 359.69979 * 18 17 16 20 20 C 1.38079 * 120.07823 * 0.02562 * 19 18 17 21 21 C 1.36153 * 109.62302 * 0.24259 * 14 13 4 22 22 N 1.38312 * 126.10136 * 179.74087 * 21 14 13 23 23 C 1.34780 * 119.99560 * 209.99303 * 22 21 14 24 24 O 1.21609 * 120.00307 * 5.96622 * 23 22 21 25 25 C 1.47332 * 119.99502 * 185.96760 * 23 22 21 26 26 N 1.31628 * 125.85244 * 359.68825 * 25 23 22 27 27 C 1.33072 * 109.21364 * 179.82985 * 26 25 23 28 28 C 1.35585 * 108.39009 * 0.43760 * 27 26 25 29 29 N 1.35958 * 107.06863 * 359.73786 * 28 27 26 30 30 H 0.97001 * 126.48633 * 180.02562 * 29 28 27 31 31 H 0.96997 * 119.99966 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.04309 * 0.02637 * 16 15 14 33 33 H 1.07998 * 119.96296 * 180.31986 * 17 16 15 34 34 H 1.07994 * 119.91916 * 179.71752 * 18 17 16 35 35 H 1.07993 * 119.96131 * 180.02562 * 19 18 17 36 36 H 1.08003 * 120.03944 * 180.02562 * 20 19 18 37 37 H 0.96997 * 120.00460 * 29.98718 * 22 21 14 38 38 H 1.07996 * 125.81080 * 180.16821 * 27 26 25 39 39 H 1.07995 * 126.46963 * 179.73344 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4508 0.9059 -0.7574 5 6 3.0451 1.9405 -1.6227 6 1 1.9940 2.1309 -1.7814 7 6 4.0047 2.7228 -2.2765 8 7 5.2779 2.4926 -2.0840 9 14 3.4668 4.0955 -3.4237 10 1 2.6539 5.0820 -2.6681 11 1 4.6651 4.7682 -3.9867 12 1 2.6539 3.5270 -4.5288 13 7 4.7007 0.5627 -0.4689 14 7 4.6866 -0.5092 0.4279 15 6 5.8208 -1.1355 0.9525 16 6 5.8513 -1.5153 2.2890 17 6 6.9713 -2.1389 2.8023 18 6 8.0664 -2.3750 1.9910 19 6 8.0416 -1.9932 0.6618 20 6 6.9230 -1.3742 0.1403 21 6 3.3996 -0.8541 0.7081 22 7 2.9940 -1.8727 1.5512 23 6 1.8319 -2.5155 1.3209 24 8 1.1937 -2.2759 0.3139 25 6 1.3349 -3.5084 2.2893 26 7 1.9321 -3.8597 3.4085 27 6 1.1940 -4.7764 4.0296 28 6 0.0948 -5.0234 3.2753 29 7 0.1777 -4.2271 2.1765 30 1 -0.4634 -4.1778 1.4501 31 1 5.9427 3.0348 -2.5367 32 1 4.9983 -1.3273 2.9241 33 1 6.9938 -2.4390 3.8395 34 1 8.9427 -2.8588 2.3963 35 1 8.8983 -2.1795 0.0312 36 1 6.9042 -1.0768 -0.8978 37 1 3.5458 -2.1246 2.3081 38 1 1.4323 -5.2471 4.9719 39 1 -0.6972 -5.7211 3.5040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187732511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:47 Heat of formation + Delta-G solvation = 171.177149 kcal Electronic energy + Delta-G solvation = -29233.133096 eV Core-core repulsion = 25144.218685 eV Total energy + Delta-G solvation = -4088.914411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.108 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.41236 -40.65870 -39.10713 -38.11104 -35.22329 -34.86232 -33.75232 -32.82419 -32.16862 -30.76493 -30.28178 -28.79245 -28.07165 -26.05497 -24.43869 -22.86799 -22.33637 -21.79825 -21.10449 -20.37591 -20.23580 -19.05599 -18.08261 -16.92221 -16.62629 -16.38582 -15.92341 -15.60362 -15.16828 -14.99469 -14.81447 -14.30335 -14.28801 -14.10042 -13.85728 -13.67316 -13.46254 -13.16498 -12.89600 -12.53524 -11.93966 -11.82931 -11.69690 -11.38406 -11.28434 -11.11832 -10.93663 -10.75886 -10.58967 -10.52889 -10.45135 -10.23002 -10.12074 -9.61022 -8.96140 -8.88470 -8.77474 -8.68235 -7.64035 -7.21443 -6.65981 -4.64116 1.01754 1.37097 1.57685 2.14783 2.29554 2.64826 3.04677 3.09101 3.12486 3.16340 3.33323 3.60806 3.79229 3.90250 3.98561 4.06240 4.12854 4.65403 4.71102 4.94165 5.04814 5.09036 5.10447 5.27726 5.37528 5.46420 5.56157 5.64663 5.72276 5.83087 6.00328 6.15918 6.20412 6.30733 6.40852 6.55821 6.70457 6.78981 6.84503 6.99911 7.08083 7.19199 7.31366 7.56448 7.82106 8.10509 8.28072 8.54835 8.82068 8.87472 9.45238 10.28741 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.004378 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.160910 B = 6394.467708 C = 9285.284380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.335 3.665 3 C -0.206 4.206 4 C 0.259 3.741 5 C -0.424 4.424 6 H 0.088 0.912 7 C 0.074 3.926 8 N -0.753 5.753 9 Si 0.915 3.085 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.264 1.264 13 N -0.311 5.311 14 N -0.351 5.351 15 C 0.188 3.812 16 C -0.159 4.159 17 C -0.095 4.095 18 C -0.144 4.144 19 C -0.100 4.100 20 C -0.110 4.110 21 C 0.332 3.668 22 N -0.628 5.628 23 C 0.602 3.398 24 O -0.488 6.488 25 C 0.156 3.844 26 N -0.443 5.443 27 C -0.025 4.025 28 C -0.023 4.023 29 N -0.522 5.522 30 H 0.433 0.567 31 H 0.280 0.720 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.420 0.580 38 H 0.181 0.819 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 -13.672 10.395 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C 0.024 3.976 3 C -0.226 4.226 4 C 0.107 3.893 5 C -0.463 4.463 6 H 0.107 0.893 7 C -0.149 4.149 8 N -0.378 5.378 9 Si 0.739 3.261 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.189 1.189 13 N -0.140 5.140 14 N -0.125 5.125 15 C 0.093 3.907 16 C -0.180 4.180 17 C -0.114 4.114 18 C -0.163 4.163 19 C -0.118 4.118 20 C -0.130 4.130 21 C 0.112 3.888 22 N -0.278 5.278 23 C 0.385 3.615 24 O -0.358 6.358 25 C -0.106 4.106 26 N -0.166 5.166 27 C -0.178 4.178 28 C -0.162 4.162 29 N -0.125 5.125 30 H 0.273 0.727 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.155 0.845 37 H 0.260 0.740 38 H 0.198 0.802 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.293 -12.915 9.713 16.212 hybrid contribution -1.353 -0.163 -0.439 1.431 sum -0.060 -13.078 9.274 16.033 Atomic orbital electron populations 1.80943 1.12002 1.12245 1.11752 1.24107 0.91086 0.90450 0.91968 1.16790 0.85170 1.05499 1.15113 1.20239 0.86613 0.91276 0.91175 1.18634 0.94635 1.11398 1.21610 0.89346 1.25887 0.94443 0.98051 0.96546 1.69854 1.00866 1.33832 1.33268 0.86237 0.78925 0.80509 0.80379 1.18861 1.20269 1.18883 1.79181 1.16604 1.03825 1.14357 1.46375 0.99239 1.29008 1.37882 1.17455 0.87058 0.94659 0.91531 1.20988 0.99978 1.04017 0.93044 1.20857 0.92679 0.98190 0.99641 1.21075 0.98595 1.02412 0.94220 1.21034 0.97504 0.97842 0.95443 1.21123 0.92547 0.98595 1.00728 1.17769 0.86564 0.89225 0.95271 1.42281 1.22330 1.33852 1.29363 1.16408 0.81151 0.79670 0.84236 1.90970 1.56200 1.62528 1.26117 1.22234 0.88838 1.01965 0.97566 1.70182 1.29347 1.13075 1.04029 1.22510 0.93138 1.00135 1.02055 1.23154 1.03432 1.00375 0.89256 1.43092 1.19455 1.29962 1.19949 0.72740 0.90950 0.86297 0.85670 0.86166 0.85743 0.84541 0.73996 0.80213 0.79453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.06 17.97 41.84 0.75 -11.31 16 2 C 0.33 8.27 12.08 -22.47 -0.27 8.00 16 3 C -0.21 -5.08 5.89 -104.08 -0.61 -5.69 16 4 C 0.26 6.92 6.94 -82.74 -0.57 6.35 16 5 C -0.42 -11.28 9.26 -37.93 -0.35 -11.64 16 6 H 0.09 2.30 7.85 -52.49 -0.41 1.89 16 7 C 0.07 1.85 5.50 -17.32 -0.10 1.76 16 8 N -0.75 -19.46 11.95 55.55 0.66 -18.79 16 9 Si 0.92 18.82 29.56 -169.99 -5.02 13.79 16 10 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 13 N -0.31 -8.09 10.53 33.37 0.35 -7.74 16 14 N -0.35 -7.77 3.70 -9.41 -0.03 -7.81 16 15 C 0.19 3.49 6.26 -83.69 -0.52 2.97 16 16 C -0.16 -2.41 8.65 -39.36 -0.34 -2.75 16 17 C -0.09 -1.17 10.04 -39.61 -0.40 -1.57 16 18 C -0.14 -1.72 10.04 -39.52 -0.40 -2.12 16 19 C -0.10 -1.34 10.04 -39.61 -0.40 -1.74 16 20 C -0.11 -1.90 9.79 -39.37 -0.39 -2.28 16 21 C 0.33 7.21 7.11 -152.54 -1.09 6.12 16 22 N -0.63 -11.23 5.21 -11.93 -0.06 -11.29 16 23 C 0.60 10.77 7.41 -12.56 -0.09 10.68 16 24 O -0.49 -10.24 12.80 5.27 0.07 -10.17 16 25 C 0.16 2.25 7.95 -154.52 -1.23 1.02 16 26 N -0.44 -5.87 10.89 -11.27 -0.12 -5.99 16 27 C -0.03 -0.24 11.85 -17.96 -0.21 -0.46 16 28 C -0.02 -0.19 12.03 -16.67 -0.20 -0.39 16 29 N -0.52 -5.76 6.17 -10.66 -0.07 -5.83 16 30 H 0.43 4.17 8.96 -40.82 -0.37 3.81 16 31 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 32 H 0.12 1.68 6.28 -52.49 -0.33 1.35 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.14 2.57 8.06 -52.48 -0.42 2.15 16 37 H 0.42 6.47 5.62 -40.82 -0.23 6.24 16 38 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.19 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -33.31 356.29 -8.28 -41.59 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -3.01 Total: 9.92 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: -7.17 Total: 8.25 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: 1.48 Total: -68.75 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.31 -8.28 -41.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187732511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.764 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds