Wall clock time and date at job start Wed Apr 1 2020 05:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.47392 * 126.81291 * 140.07251 * 3 2 1 5 5 C 1.40848 * 126.46907 * 0.02562 * 4 3 2 6 6 H 1.07996 * 120.00337 * 0.02562 * 5 4 3 7 7 C 1.40006 * 119.99725 * 179.97438 * 5 4 3 8 8 N 1.30815 * 120.00226 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00106 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47000 * 59.99903 * 9 7 5 11 11 H 1.48501 * 109.47427 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47202 * 300.00322 * 9 7 5 13 13 N 1.32790 * 107.05874 * 179.97438 * 4 3 2 14 14 N 1.39763 * 109.15747 * 0.02562 * 13 4 3 15 15 C 1.39776 * 125.18747 * 179.97438 * 14 13 4 16 16 C 1.38974 * 120.07774 * 139.48170 * 15 14 13 17 17 C 1.38088 * 119.91996 * 179.72354 * 16 15 14 18 18 C 1.38317 * 120.07636 * 0.57593 * 17 16 15 19 19 C 1.38315 * 120.15843 * 359.69979 * 18 17 16 20 20 C 1.38079 * 120.07823 * 0.02562 * 19 18 17 21 21 C 1.36153 * 109.62302 * 0.24259 * 14 13 4 22 22 N 1.38312 * 126.10136 * 179.74087 * 21 14 13 23 23 C 1.34780 * 119.99560 * 209.99303 * 22 21 14 24 24 O 1.21609 * 120.00307 * 5.96622 * 23 22 21 25 25 C 1.47332 * 119.99502 * 185.96760 * 23 22 21 26 26 N 1.31628 * 125.85244 * 359.68825 * 25 23 22 27 27 C 1.33072 * 109.21364 * 179.82985 * 26 25 23 28 28 C 1.35585 * 108.39009 * 0.43760 * 27 26 25 29 29 N 1.35958 * 107.06863 * 359.73786 * 28 27 26 30 30 H 0.97001 * 126.48633 * 180.02562 * 29 28 27 31 31 H 0.96997 * 119.99966 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.04309 * 0.02637 * 16 15 14 33 33 H 1.07998 * 119.96296 * 180.31986 * 17 16 15 34 34 H 1.07994 * 119.91916 * 179.71752 * 18 17 16 35 35 H 1.07993 * 119.96131 * 180.02562 * 19 18 17 36 36 H 1.08003 * 120.03944 * 180.02562 * 20 19 18 37 37 H 0.96997 * 120.00460 * 29.98718 * 22 21 14 38 38 H 1.07996 * 125.81080 * 180.16821 * 27 26 25 39 39 H 1.07995 * 126.46963 * 179.73344 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4508 0.9059 -0.7574 5 6 3.0451 1.9405 -1.6227 6 1 1.9940 2.1309 -1.7814 7 6 4.0047 2.7228 -2.2765 8 7 5.2779 2.4926 -2.0840 9 14 3.4668 4.0955 -3.4237 10 1 2.6539 5.0820 -2.6681 11 1 4.6651 4.7682 -3.9867 12 1 2.6539 3.5270 -4.5288 13 7 4.7007 0.5627 -0.4689 14 7 4.6866 -0.5092 0.4279 15 6 5.8208 -1.1355 0.9525 16 6 5.8513 -1.5153 2.2890 17 6 6.9713 -2.1389 2.8023 18 6 8.0664 -2.3750 1.9910 19 6 8.0416 -1.9932 0.6618 20 6 6.9230 -1.3742 0.1403 21 6 3.3996 -0.8541 0.7081 22 7 2.9940 -1.8727 1.5512 23 6 1.8319 -2.5155 1.3209 24 8 1.1937 -2.2759 0.3139 25 6 1.3349 -3.5084 2.2893 26 7 1.9321 -3.8597 3.4085 27 6 1.1940 -4.7764 4.0296 28 6 0.0948 -5.0234 3.2753 29 7 0.1777 -4.2271 2.1765 30 1 -0.4634 -4.1778 1.4501 31 1 5.9427 3.0348 -2.5367 32 1 4.9983 -1.3273 2.9241 33 1 6.9938 -2.4390 3.8395 34 1 8.9427 -2.8588 2.3963 35 1 8.8983 -2.1795 0.0312 36 1 6.9042 -1.0768 -0.8978 37 1 3.5458 -2.1246 2.3081 38 1 1.4323 -5.2471 4.9719 39 1 -0.6972 -5.7211 3.5040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187732511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:46 Heat of formation + Delta-G solvation = 149.427779 kcal Electronic energy + Delta-G solvation = -29234.076219 eV Core-core repulsion = 25144.218685 eV Total energy + Delta-G solvation = -4089.857534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.108 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.32803 -42.21462 -40.48821 -39.52055 -37.03989 -36.49492 -35.50067 -33.78439 -33.71414 -31.93100 -31.37095 -30.33532 -29.65670 -27.84952 -25.72553 -24.15517 -23.67155 -22.60227 -22.52672 -21.87227 -21.65648 -20.31490 -19.49660 -18.58616 -17.95091 -17.84700 -17.21759 -17.02634 -16.67995 -16.36290 -16.24003 -15.54093 -15.51192 -15.07195 -15.01571 -14.95447 -14.62621 -14.60828 -14.33401 -14.04395 -13.78676 -13.54008 -13.39883 -13.00268 -12.90476 -12.77145 -12.41989 -12.11951 -12.01036 -11.88451 -11.70715 -11.47103 -11.42191 -11.27488 -10.76785 -10.36059 -9.93301 -9.71893 -9.25177 -8.94975 -8.53965 -6.62349 -0.24102 0.20663 0.41686 0.80890 1.04241 1.36487 1.42335 1.54037 1.55502 1.86288 1.95749 2.04234 2.19883 2.25007 2.36712 2.73311 2.83311 2.99185 3.41309 3.60758 3.87958 3.89652 4.00985 4.26310 4.29136 4.34354 4.40911 4.43420 4.46761 4.52178 4.74439 4.81996 4.91401 5.09272 5.14940 5.30641 5.46197 5.52185 5.55293 5.58062 5.83086 5.93483 6.03908 6.18157 6.37397 6.59073 6.65818 6.77102 6.89673 6.98054 7.55698 8.42832 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.004378 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.160910 B = 6394.467708 C = 9285.284380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.341 3.659 3 C -0.255 4.255 4 C 0.236 3.764 5 C -0.460 4.460 6 H 0.080 0.920 7 C 0.035 3.965 8 N -0.785 5.785 9 Si 0.988 3.012 10 H -0.260 1.260 11 H -0.262 1.262 12 H -0.263 1.263 13 N -0.339 5.339 14 N -0.347 5.347 15 C 0.136 3.864 16 C -0.158 4.158 17 C -0.084 4.084 18 C -0.122 4.122 19 C -0.096 4.096 20 C -0.132 4.132 21 C 0.356 3.644 22 N -0.619 5.619 23 C 0.601 3.399 24 O -0.528 6.528 25 C 0.105 3.895 26 N -0.450 5.450 27 C -0.040 4.040 28 C 0.016 3.984 29 N -0.518 5.518 30 H 0.437 0.563 31 H 0.287 0.713 32 H 0.124 0.876 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.105 0.895 37 H 0.431 0.569 38 H 0.216 0.784 39 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.450 -16.419 13.321 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C 0.031 3.969 3 C -0.275 4.275 4 C 0.083 3.917 5 C -0.499 4.499 6 H 0.099 0.901 7 C -0.185 4.185 8 N -0.411 5.411 9 Si 0.808 3.192 10 H -0.185 1.185 11 H -0.186 1.186 12 H -0.187 1.187 13 N -0.167 5.167 14 N -0.122 5.122 15 C 0.044 3.956 16 C -0.179 4.179 17 C -0.103 4.103 18 C -0.140 4.140 19 C -0.114 4.114 20 C -0.152 4.152 21 C 0.132 3.868 22 N -0.270 5.270 23 C 0.388 3.612 24 O -0.401 6.401 25 C -0.152 4.152 26 N -0.174 5.174 27 C -0.193 4.193 28 C -0.124 4.124 29 N -0.121 5.121 30 H 0.278 0.722 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.186 0.814 34 H 0.184 0.816 35 H 0.170 0.830 36 H 0.123 0.877 37 H 0.274 0.726 38 H 0.233 0.767 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 2.518 -15.677 12.659 20.307 hybrid contribution -1.548 0.347 -1.070 1.914 sum 0.970 -15.330 11.589 19.242 Atomic orbital electron populations 1.80874 1.12066 1.13221 1.12568 1.24181 0.91204 0.89941 0.91610 1.16839 0.85303 1.07571 1.17766 1.20537 0.87490 0.91900 0.91750 1.18872 0.94804 1.12868 1.23331 0.90139 1.26739 0.94156 1.00002 0.97565 1.69933 1.01898 1.35007 1.34258 0.85168 0.78909 0.77167 0.77975 1.18481 1.18551 1.18730 1.78998 1.16786 1.05481 1.15454 1.46457 1.00533 1.28247 1.36922 1.17980 0.86734 0.97399 0.93511 1.21180 1.01489 1.03815 0.91446 1.21380 0.91191 0.96072 1.01611 1.21638 0.99607 0.99835 0.92932 1.21372 0.96699 0.96429 0.96927 1.21092 0.94028 1.00520 0.99569 1.17735 0.86072 0.88880 0.94143 1.42274 1.22833 1.32924 1.29007 1.16960 0.80234 0.79656 0.84387 1.90934 1.57061 1.63994 1.28081 1.21448 0.91305 1.04148 0.98318 1.70111 1.30119 1.13669 1.03548 1.23269 0.93192 0.99512 1.03344 1.24115 1.03401 0.98229 0.86672 1.43236 1.18471 1.29561 1.20858 0.72224 0.90262 0.85781 0.81433 0.81569 0.82970 0.87708 0.72611 0.76723 0.74312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -26.45 17.97 19.00 0.34 -26.11 16 2 C 0.34 18.06 12.08 88.33 1.07 19.13 16 3 C -0.26 -13.60 5.89 -19.51 -0.11 -13.71 16 4 C 0.24 13.65 6.94 42.05 0.29 13.95 16 5 C -0.46 -26.37 9.26 23.34 0.22 -26.15 16 6 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 7 C 0.04 1.86 5.50 85.27 0.47 2.33 16 8 N -0.78 -42.75 11.95 21.84 0.26 -42.49 16 9 Si 0.99 40.10 29.56 68.60 2.03 42.12 16 10 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 11 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 12 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 13 N -0.34 -18.97 10.53 -48.34 -0.51 -19.48 16 14 N -0.35 -16.41 3.70 -183.68 -0.68 -17.09 16 15 C 0.14 5.22 6.26 38.23 0.24 5.46 16 16 C -0.16 -4.63 8.65 22.41 0.19 -4.44 16 17 C -0.08 -1.74 10.04 22.25 0.22 -1.52 16 18 C -0.12 -2.34 10.04 22.31 0.22 -2.12 16 19 C -0.10 -2.38 10.04 22.25 0.22 -2.16 16 20 C -0.13 -4.71 9.79 22.41 0.22 -4.49 16 21 C 0.36 16.51 7.11 132.03 0.94 17.45 16 22 N -0.62 -23.15 5.21 -309.90 -1.62 -24.76 16 23 C 0.60 22.47 7.41 86.64 0.64 23.11 16 24 O -0.53 -23.54 12.80 -4.06 -0.05 -23.59 16 25 C 0.11 3.00 7.95 136.24 1.08 4.08 16 26 N -0.45 -11.08 10.89 -189.58 -2.07 -13.15 16 27 C -0.04 -0.61 11.85 83.89 0.99 0.38 16 28 C 0.02 0.19 12.03 83.44 1.00 1.20 16 29 N -0.52 -10.56 6.17 -187.64 -1.16 -11.72 16 30 H 0.44 8.02 8.96 -92.71 -0.83 7.19 16 31 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 32 H 0.12 3.42 6.28 -2.91 -0.02 3.40 16 33 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 37 H 0.43 13.54 5.62 -92.71 -0.52 13.02 16 38 H 0.22 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.24 0.25 8.06 -2.91 -0.02 0.23 16 Total: -1.00 -82.25 356.29 4.28 -77.97 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.18 Total: 25.79 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: 7.91 Total: 32.51 kcal Atomic # 7 Polarization: -149.38 SS G_CDS: -5.42 Total: -154.80 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.05 Total: -23.59 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.12 kcal Total: -82.25 4.28 -77.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187732511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.393 kcal (2) G-P(sol) polarization free energy of solvation -82.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds