Wall clock time and date at job start Wed Apr 1 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86809 * 119.99585 * 2 1 4 4 H 1.48497 * 109.47104 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.46943 * 29.99961 * 3 2 1 6 6 H 1.48497 * 109.46910 * 149.99761 * 3 2 1 7 7 C 1.38796 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99554 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00095 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.47514 * 118.76070 * 0.27869 * 13 11 10 15 15 C 1.53568 * 111.03129 * 138.34559 * 14 13 11 16 16 C 1.51544 * 109.58338 * 320.02820 * 15 14 13 17 17 O 1.42151 * 108.75713 * 91.39760 * 16 15 14 18 18 C 1.38013 * 119.43637 * 272.77079 * 17 16 15 19 19 H 1.08999 * 109.47536 * 303.42546 * 18 17 16 20 20 C 1.53002 * 109.46800 * 183.43262 * 18 17 16 21 21 N 1.46902 * 109.47259 * 65.00092 * 20 18 17 22 22 C 1.46899 * 111.00064 * 180.02562 * 21 20 18 23 23 C 1.50702 * 109.47047 * 179.97438 * 22 21 20 24 24 C 1.31162 * 119.99710 * 124.99673 * 23 22 21 25 25 Cl 1.73601 * 120.00235 * 0.02562 * 24 23 22 26 26 C 1.45124 * 118.75987 * 180.02562 * 13 11 10 27 27 H 0.97002 * 120.00159 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 29 29 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 30 30 H 1.08990 * 109.16697 * 258.75243 * 14 13 11 31 31 H 1.09005 * 109.16442 * 17.95371 * 14 13 11 32 32 H 1.09002 * 109.45251 * 80.05845 * 15 14 13 33 33 H 1.08992 * 109.45529 * 200.01494 * 15 14 13 34 34 H 1.09000 * 109.59152 * 211.18108 * 16 15 14 35 35 H 1.09000 * 109.58990 * 331.46871 * 16 15 14 36 36 H 1.09000 * 109.47091 * 184.99933 * 20 18 17 37 37 H 1.09001 * 109.47157 * 304.99740 * 20 18 17 38 38 H 1.00896 * 111.00021 * 56.04367 * 21 20 18 39 39 H 1.08999 * 109.47030 * 299.99620 * 22 21 20 40 40 H 1.08999 * 109.47310 * 59.99716 * 22 21 20 41 41 H 1.07995 * 120.00077 * 304.99963 * 23 22 21 42 42 H 1.08005 * 120.00012 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.45638 * 29.32652 * 26 13 11 44 44 H 1.09002 * 109.46156 * 149.28675 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 0.0012 10 6 4.0867 -2.9843 0.0025 11 6 5.5732 -3.2322 0.0026 12 8 6.3442 -2.2959 0.0024 13 7 6.0459 -4.4943 0.0092 14 6 5.0838 -5.6126 0.0099 15 6 5.5398 -6.7324 -0.9369 16 6 6.1205 -6.1260 -2.1984 17 8 7.5209 -5.9576 -2.0219 18 6 7.9970 -4.7992 -1.4419 19 1 7.6457 -3.9376 -2.0097 20 6 9.5268 -4.8205 -1.4418 21 7 10.0171 -4.7918 -2.8263 22 6 11.4855 -4.8118 -2.8653 23 6 11.9503 -4.7821 -4.2985 24 6 12.7855 -3.8530 -4.6979 25 17 13.3560 -2.6580 -3.5754 26 6 7.4822 -4.7020 0.0097 27 1 -0.4850 0.8400 -0.0004 28 1 3.6442 -3.4320 -0.8874 29 1 3.6435 -3.4308 0.8926 30 1 4.9989 -6.0109 1.0208 31 1 4.1091 -5.2462 -0.3125 32 1 6.2991 -7.3387 -0.4428 33 1 4.6864 -7.3592 -1.1953 34 1 5.9358 -6.7910 -3.0421 35 1 5.6547 -5.1587 -2.3869 36 1 9.9023 -3.9491 -0.9053 37 1 9.8775 -5.7283 -0.9509 38 1 9.6527 -3.9924 -3.3224 39 1 11.8748 -3.9406 -2.3386 40 1 11.8494 -5.7198 -2.3844 41 1 11.5957 -5.5258 -4.9967 42 1 13.1184 -3.8315 -5.7252 43 1 7.9700 -3.8645 0.5084 44 1 7.7154 -5.6257 0.5395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199923975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:15 Heat of formation + Delta-G solvation = -59.282055 kcal Electronic energy + Delta-G solvation = -26026.511541 eV Core-core repulsion = 22131.862363 eV Total energy + Delta-G solvation = -3894.649178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.106 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58006 -38.56425 -37.59503 -36.46376 -35.38307 -33.89521 -32.47006 -32.35395 -30.47724 -28.86451 -26.72470 -25.86386 -25.59649 -23.63108 -22.01239 -21.51072 -20.29196 -19.26109 -17.87525 -17.29905 -16.87236 -16.73578 -16.59449 -16.03223 -15.25777 -15.06095 -15.00032 -14.87921 -14.42275 -14.34522 -13.92635 -13.83664 -13.36071 -13.18258 -12.87587 -12.80389 -12.72425 -12.57775 -12.19341 -12.05551 -11.98844 -11.70306 -11.55208 -11.28768 -11.20613 -11.03546 -11.00969 -10.70387 -10.53987 -9.88617 -9.69338 -9.56833 -9.52061 -9.03405 -8.67311 -8.61524 -8.52457 -6.95994 -6.31856 -4.04079 1.44072 1.95559 2.65005 2.83400 3.12353 3.30675 3.47914 3.50339 3.54204 3.87077 4.29984 4.41896 4.50088 4.58395 4.66693 4.76968 4.87997 4.89678 5.01193 5.05286 5.07275 5.09456 5.21254 5.24308 5.31085 5.36067 5.40822 5.49198 5.54863 5.61889 5.69240 5.74593 5.77498 5.81865 5.87506 5.89056 5.94843 6.54436 6.65896 7.04374 7.28778 7.57103 7.91059 8.35291 8.38232 9.14284 10.77270 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.002413 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.577156 B =11600.220392 C =13440.690473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.527 3.473 12 O -0.516 6.516 13 N -0.616 5.616 14 C 0.103 3.897 15 C -0.165 4.165 16 C 0.074 3.926 17 O -0.371 6.371 18 C 0.095 3.905 19 H 0.053 0.947 20 C 0.072 3.928 21 N -0.676 5.676 22 C 0.072 3.928 23 C -0.132 4.132 24 C -0.111 4.111 25 Cl -0.094 7.094 26 C 0.084 3.916 27 H 0.271 0.729 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.343 0.657 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.091 0.909 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.038 -15.921 -6.120 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.273 4.273 11 C 0.315 3.685 12 O -0.390 6.390 13 N -0.352 5.352 14 C -0.020 4.020 15 C -0.203 4.203 16 C -0.002 4.002 17 O -0.290 6.290 18 C 0.035 3.965 19 H 0.071 0.929 20 C -0.057 4.057 21 N -0.307 5.307 22 C -0.057 4.057 23 C -0.151 4.151 24 C -0.156 4.156 25 Cl -0.066 7.066 26 C -0.041 4.041 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.161 0.839 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.159 0.841 42 H 0.166 0.834 43 H 0.109 0.891 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 23.106 -15.158 -6.131 28.306 hybrid contribution -0.948 0.737 0.397 1.265 sum 22.158 -14.421 -5.734 27.052 Atomic orbital electron populations 1.69935 1.05896 1.27793 1.47981 1.24711 0.94453 0.98958 0.93162 0.86740 0.81898 0.83304 0.79944 1.19200 1.19913 1.15943 1.22293 0.88168 0.97523 1.58880 0.89391 1.84804 1.09405 1.00040 1.97407 1.23340 0.94094 1.04316 1.05527 1.20428 0.90788 0.82117 0.75211 1.90690 1.58758 1.41777 1.47781 1.47856 1.05953 1.06117 1.75239 1.22027 0.92672 0.87183 1.00086 1.22481 1.02307 0.98240 0.97303 1.22156 0.81057 1.00433 0.96576 1.86311 1.22593 1.39497 1.80562 1.21867 0.93262 0.88430 0.92990 0.92888 1.21887 0.92423 1.01665 0.89751 1.60338 1.06837 1.48918 1.14598 1.21211 0.88633 1.02297 0.93520 1.23191 0.95929 0.97536 0.98489 1.24602 1.01836 0.92954 0.96214 1.98368 1.88162 1.57431 1.62667 1.22130 0.81152 1.03124 0.97654 0.91913 0.88596 0.88472 0.91350 0.89201 0.90263 0.89469 0.89156 0.92857 0.93256 0.89928 0.83863 0.93216 0.89647 0.84117 0.83351 0.89107 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.34 13.97 55.49 0.78 -25.56 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.68 27.74 -169.99 -4.72 16.96 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.34 4.49 36.01 0.16 -2.18 16 11 C 0.53 9.32 7.65 -10.98 -0.08 9.23 16 12 O -0.52 -10.88 15.29 5.55 0.08 -10.79 16 13 N -0.62 -8.16 2.20 -172.77 -0.38 -8.54 16 14 C 0.10 1.05 6.00 -3.19 -0.02 1.04 16 15 C -0.16 -1.38 5.78 -27.17 -0.16 -1.54 16 16 C 0.07 0.74 6.37 36.42 0.23 0.98 16 17 O -0.37 -4.22 9.40 -26.53 -0.25 -4.47 16 18 C 0.10 1.08 2.81 -26.04 -0.07 1.00 16 19 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 20 C 0.07 0.69 5.34 -3.82 -0.02 0.67 16 21 N -0.68 -6.27 6.43 -115.06 -0.74 -7.00 16 22 C 0.07 0.56 5.98 -4.98 -0.03 0.53 16 23 C -0.13 -0.88 9.78 -36.07 -0.35 -1.23 16 24 C -0.11 -0.72 10.82 28.97 0.31 -0.40 16 25 Cl -0.09 -0.78 26.97 -51.86 -1.40 -2.18 16 26 C 0.08 0.98 4.83 -4.09 -0.02 0.96 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.10 1.70 7.41 -51.91 -0.38 1.32 16 29 H 0.10 1.74 8.04 -51.92 -0.42 1.32 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.95 5.88 -51.93 -0.31 0.64 16 32 H 0.08 0.66 8.01 -51.93 -0.42 0.24 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.63 7.41 -51.93 -0.38 0.24 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.34 3.31 8.72 -39.29 -0.34 2.97 16 39 H 0.05 0.42 6.01 -51.93 -0.31 0.10 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 43 H 0.09 1.17 7.27 -51.93 -0.38 0.80 16 44 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -33.33 383.21 -9.42 -42.75 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.74 Total: 1.44 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 0.17 Total: -2.79 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.34 Total: -41.11 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.16 Total: -15.26 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.40 Total: -2.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.33 -9.42 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199923975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.534 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds