Wall clock time and date at job start Wed Apr 1 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86809 * 119.99585 * 2 1 4 4 H 1.48497 * 109.47104 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.46943 * 29.99961 * 3 2 1 6 6 H 1.48497 * 109.46910 * 149.99761 * 3 2 1 7 7 C 1.38796 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99554 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00095 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.47514 * 118.76070 * 0.27869 * 13 11 10 15 15 C 1.53568 * 111.03129 * 138.34559 * 14 13 11 16 16 C 1.51544 * 109.58338 * 320.02820 * 15 14 13 17 17 O 1.42151 * 108.75713 * 91.39760 * 16 15 14 18 18 C 1.38013 * 119.43637 * 272.77079 * 17 16 15 19 19 H 1.08999 * 109.47536 * 303.42546 * 18 17 16 20 20 C 1.53002 * 109.46800 * 183.43262 * 18 17 16 21 21 N 1.46902 * 109.47259 * 65.00092 * 20 18 17 22 22 C 1.46899 * 111.00064 * 180.02562 * 21 20 18 23 23 C 1.50702 * 109.47047 * 179.97438 * 22 21 20 24 24 C 1.31162 * 119.99710 * 124.99673 * 23 22 21 25 25 Cl 1.73601 * 120.00235 * 0.02562 * 24 23 22 26 26 C 1.45124 * 118.75987 * 180.02562 * 13 11 10 27 27 H 0.97002 * 120.00159 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 29 29 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 30 30 H 1.08990 * 109.16697 * 258.75243 * 14 13 11 31 31 H 1.09005 * 109.16442 * 17.95371 * 14 13 11 32 32 H 1.09002 * 109.45251 * 80.05845 * 15 14 13 33 33 H 1.08992 * 109.45529 * 200.01494 * 15 14 13 34 34 H 1.09000 * 109.59152 * 211.18108 * 16 15 14 35 35 H 1.09000 * 109.58990 * 331.46871 * 16 15 14 36 36 H 1.09000 * 109.47091 * 184.99933 * 20 18 17 37 37 H 1.09001 * 109.47157 * 304.99740 * 20 18 17 38 38 H 1.00896 * 111.00021 * 56.04367 * 21 20 18 39 39 H 1.08999 * 109.47030 * 299.99620 * 22 21 20 40 40 H 1.08999 * 109.47310 * 59.99716 * 22 21 20 41 41 H 1.07995 * 120.00077 * 304.99963 * 23 22 21 42 42 H 1.08005 * 120.00012 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.45638 * 29.32652 * 26 13 11 44 44 H 1.09002 * 109.46156 * 149.28675 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 0.0012 10 6 4.0867 -2.9843 0.0025 11 6 5.5732 -3.2322 0.0026 12 8 6.3442 -2.2959 0.0024 13 7 6.0459 -4.4943 0.0092 14 6 5.0838 -5.6126 0.0099 15 6 5.5398 -6.7324 -0.9369 16 6 6.1205 -6.1260 -2.1984 17 8 7.5209 -5.9576 -2.0219 18 6 7.9970 -4.7992 -1.4419 19 1 7.6457 -3.9376 -2.0097 20 6 9.5268 -4.8205 -1.4418 21 7 10.0171 -4.7918 -2.8263 22 6 11.4855 -4.8118 -2.8653 23 6 11.9503 -4.7821 -4.2985 24 6 12.7855 -3.8530 -4.6979 25 17 13.3560 -2.6580 -3.5754 26 6 7.4822 -4.7020 0.0097 27 1 -0.4850 0.8400 -0.0004 28 1 3.6442 -3.4320 -0.8874 29 1 3.6435 -3.4308 0.8926 30 1 4.9989 -6.0109 1.0208 31 1 4.1091 -5.2462 -0.3125 32 1 6.2991 -7.3387 -0.4428 33 1 4.6864 -7.3592 -1.1953 34 1 5.9358 -6.7910 -3.0421 35 1 5.6547 -5.1587 -2.3869 36 1 9.9023 -3.9491 -0.9053 37 1 9.8775 -5.7283 -0.9509 38 1 9.6527 -3.9924 -3.3224 39 1 11.8748 -3.9406 -2.3386 40 1 11.8494 -5.7198 -2.3844 41 1 11.5957 -5.5258 -4.9967 42 1 13.1184 -3.8315 -5.7252 43 1 7.9700 -3.8645 0.5084 44 1 7.7154 -5.6257 0.5395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199923975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:15 Heat of formation + Delta-G solvation = -81.686802 kcal Electronic energy + Delta-G solvation = -26027.483084 eV Core-core repulsion = 22131.862363 eV Total energy + Delta-G solvation = -3895.620721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66953 -39.70095 -38.22593 -37.16622 -36.44184 -34.69218 -34.63777 -33.07796 -31.78629 -29.86594 -27.94484 -27.57734 -26.61736 -24.47258 -22.92972 -22.35157 -20.84504 -20.61544 -19.58911 -18.38553 -17.97871 -17.70170 -17.53131 -17.12118 -16.94794 -16.28698 -16.07578 -15.67436 -15.57807 -15.30580 -15.11546 -14.94051 -14.90843 -14.35162 -14.01565 -13.82667 -13.61481 -13.44237 -13.36566 -13.15581 -13.03398 -12.82945 -12.79320 -12.63157 -12.46799 -12.31062 -12.05743 -11.88914 -11.61091 -11.47452 -11.19175 -10.97918 -10.57324 -10.54468 -10.09728 -9.69898 -9.39343 -9.03099 -8.53306 -6.24576 0.92148 0.95058 1.29288 1.42409 1.43656 1.43891 1.51556 1.99367 2.22857 2.64606 2.67794 2.84897 3.14170 3.45936 3.78247 3.87740 3.89439 3.97094 4.04041 4.09338 4.22132 4.26388 4.32070 4.37419 4.41095 4.49585 4.59846 4.60268 4.65079 4.76236 4.78661 4.82812 4.95854 5.11147 5.15647 5.21968 5.30874 5.52646 5.69069 5.94387 6.09021 6.10103 6.28963 6.69142 6.91895 7.01317 8.58908 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.002413 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.577156 B =11600.220392 C =13440.690473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.178 6.178 10 C -0.106 4.106 11 C 0.527 3.473 12 O -0.558 6.558 13 N -0.602 5.602 14 C 0.093 3.907 15 C -0.153 4.153 16 C 0.068 3.932 17 O -0.375 6.375 18 C 0.105 3.895 19 H 0.022 0.978 20 C 0.077 3.923 21 N -0.680 5.680 22 C 0.073 3.927 23 C -0.135 4.135 24 C -0.109 4.109 25 Cl -0.114 7.114 26 C 0.083 3.917 27 H 0.277 0.723 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.031 0.969 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.339 0.661 39 H 0.042 0.958 40 H 0.091 0.909 41 H 0.154 0.846 42 H 0.171 0.829 43 H 0.077 0.923 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.286 -17.807 -6.349 29.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.257 4.257 11 C 0.315 3.685 12 O -0.436 6.436 13 N -0.335 5.335 14 C -0.028 4.028 15 C -0.191 4.191 16 C -0.008 4.008 17 O -0.294 6.294 18 C 0.044 3.956 19 H 0.040 0.960 20 C -0.052 4.052 21 N -0.311 5.311 22 C -0.056 4.056 23 C -0.154 4.154 24 C -0.154 4.154 25 Cl -0.086 7.086 26 C -0.041 4.041 27 H 0.087 0.913 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.156 0.844 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.172 0.828 42 H 0.189 0.811 43 H 0.095 0.905 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 24.352 -17.102 -6.360 30.429 hybrid contribution -1.330 1.113 0.430 1.787 sum 23.022 -15.989 -5.930 28.650 Atomic orbital electron populations 1.70008 1.07210 1.29017 1.49061 1.25536 0.95268 1.02158 0.92932 0.85894 0.80682 0.79774 0.80188 1.18748 1.18291 1.16189 1.22423 0.90022 0.96715 1.58282 0.91807 1.84741 1.06712 1.06105 1.97560 1.23308 0.95891 0.99544 1.06961 1.20154 0.89654 0.83284 0.75426 1.90675 1.59229 1.43433 1.50282 1.47882 1.07256 1.05312 1.73068 1.22351 0.91753 0.86711 1.02016 1.22422 1.03429 0.97478 0.95769 1.22330 0.80360 0.99840 0.98314 1.86314 1.23436 1.39055 1.80585 1.21714 0.94356 0.87416 0.92084 0.96036 1.21843 0.91084 1.02172 0.90140 1.60375 1.07778 1.48627 1.14277 1.21224 0.87632 1.02243 0.94464 1.23248 0.96068 0.98027 0.98044 1.24919 1.01663 0.92137 0.96704 1.98368 1.88378 1.58296 1.63547 1.22282 0.79810 1.03818 0.98184 0.91342 0.87165 0.86986 0.89232 0.89544 0.89272 0.86907 0.87418 0.95081 0.93469 0.88663 0.84417 0.93952 0.89059 0.82823 0.81139 0.90508 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.38 13.97 21.65 0.30 -55.08 16 2 C 0.05 2.73 5.50 84.86 0.47 3.19 16 3 Si 0.91 44.97 27.74 68.60 1.90 46.88 16 4 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 7 C -0.53 -30.46 10.04 67.95 0.68 -29.78 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -8.99 18.55 -56.49 -1.05 -10.04 16 10 C -0.11 -4.02 4.49 71.24 0.32 -3.70 16 11 C 0.53 18.43 7.65 87.66 0.67 19.11 16 12 O -0.56 -23.83 15.29 -3.04 -0.05 -23.88 16 13 N -0.60 -15.06 2.20 -818.92 -1.81 -16.86 16 14 C 0.09 1.65 6.00 86.38 0.52 2.17 16 15 C -0.15 -2.04 5.78 30.31 0.18 -1.87 16 16 C 0.07 1.21 6.37 71.50 0.46 1.67 16 17 O -0.38 -7.82 9.40 -117.84 -1.11 -8.93 16 18 C 0.10 2.29 2.81 31.04 0.09 2.38 16 19 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 20 C 0.08 1.39 5.34 86.30 0.46 1.85 16 21 N -0.68 -12.00 6.43 -517.92 -3.33 -15.33 16 22 C 0.07 1.05 5.98 85.56 0.51 1.56 16 23 C -0.13 -1.59 9.78 25.49 0.25 -1.34 16 24 C -0.11 -1.26 10.82 67.62 0.73 -0.53 16 25 Cl -0.11 -1.81 26.97 -2.72 -0.07 -1.89 16 26 C 0.08 1.82 4.83 87.09 0.42 2.24 16 27 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.11 3.84 7.41 -2.39 -0.02 3.83 16 29 H 0.11 3.90 8.04 -2.40 -0.02 3.88 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.62 5.88 -2.38 -0.01 1.61 16 32 H 0.09 1.09 8.01 -2.39 -0.02 1.07 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.03 0.70 7.41 -2.39 -0.02 0.68 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.34 6.48 8.72 -89.70 -0.78 5.70 16 39 H 0.04 0.69 6.01 -2.39 -0.01 0.67 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 43 H 0.08 1.95 7.27 -2.39 -0.02 1.93 16 44 H 0.11 1.82 8.12 -2.39 -0.02 1.80 16 Total: -1.00 -72.97 383.21 0.73 -72.24 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.19 Total: 15.93 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.75 Total: -3.04 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -4.83 Total: -87.27 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.15 Total: -32.81 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.07 Total: -1.89 kcal Total: -72.97 0.73 -72.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199923975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.450 kcal (2) G-P(sol) polarization free energy of solvation -72.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds