Wall clock time and date at job start Wed Apr 1 2020 05:35:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86809 * 119.99585 * 2 1
4 4 H 1.48497 * 109.47104 * 269.99822 * 3 2 1
5 5 H 1.48502 * 109.46943 * 29.99961 * 3 2 1
6 6 H 1.48497 * 109.46910 * 149.99761 * 3 2 1
7 7 C 1.38796 * 120.00506 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99554 * 0.02562 * 7 2 1
9 9 S 1.76200 * 120.00095 * 180.02562 * 7 2 1
10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2
11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7
12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9
13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9
14 14 C 1.47514 * 118.76070 * 0.27869 * 13 11 10
15 15 C 1.53568 * 111.03129 * 138.34559 * 14 13 11
16 16 C 1.51544 * 109.58338 * 320.02820 * 15 14 13
17 17 O 1.42151 * 108.75713 * 91.39760 * 16 15 14
18 18 C 1.38013 * 119.43637 * 272.77079 * 17 16 15
19 19 H 1.08999 * 109.47536 * 303.42546 * 18 17 16
20 20 C 1.53002 * 109.46800 * 183.43262 * 18 17 16
21 21 N 1.46902 * 109.47259 * 65.00092 * 20 18 17
22 22 C 1.46899 * 111.00064 * 180.02562 * 21 20 18
23 23 C 1.50702 * 109.47047 * 179.97438 * 22 21 20
24 24 C 1.31162 * 119.99710 * 124.99673 * 23 22 21
25 25 Cl 1.73601 * 120.00235 * 0.02562 * 24 23 22
26 26 C 1.45124 * 118.75987 * 180.02562 * 13 11 10
27 27 H 0.97002 * 120.00159 * 0.02562 * 1 2 3
28 28 H 1.09004 * 109.47193 * 60.00140 * 10 9 7
29 29 H 1.08994 * 109.47534 * 299.99814 * 10 9 7
30 30 H 1.08990 * 109.16697 * 258.75243 * 14 13 11
31 31 H 1.09005 * 109.16442 * 17.95371 * 14 13 11
32 32 H 1.09002 * 109.45251 * 80.05845 * 15 14 13
33 33 H 1.08992 * 109.45529 * 200.01494 * 15 14 13
34 34 H 1.09000 * 109.59152 * 211.18108 * 16 15 14
35 35 H 1.09000 * 109.58990 * 331.46871 * 16 15 14
36 36 H 1.09000 * 109.47091 * 184.99933 * 20 18 17
37 37 H 1.09001 * 109.47157 * 304.99740 * 20 18 17
38 38 H 1.00896 * 111.00021 * 56.04367 * 21 20 18
39 39 H 1.08999 * 109.47030 * 299.99620 * 22 21 20
40 40 H 1.08999 * 109.47310 * 59.99716 * 22 21 20
41 41 H 1.07995 * 120.00077 * 304.99963 * 23 22 21
42 42 H 1.08005 * 120.00012 * 180.02562 * 24 23 22
43 43 H 1.09003 * 109.45638 * 29.32652 * 26 13 11
44 44 H 1.09002 * 109.46156 * 149.28675 * 26 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6179 0.0000
4 1 2.4977 2.0465 -1.4000
5 1 1.4475 2.6527 0.7000
6 1 3.5477 1.4404 0.7001
7 6 2.0104 -1.2019 0.0005
8 1 1.4704 -2.1373 0.0005
9 16 3.7724 -1.2018 0.0012
10 6 4.0867 -2.9843 0.0025
11 6 5.5732 -3.2322 0.0026
12 8 6.3442 -2.2959 0.0024
13 7 6.0459 -4.4943 0.0092
14 6 5.0838 -5.6126 0.0099
15 6 5.5398 -6.7324 -0.9369
16 6 6.1205 -6.1260 -2.1984
17 8 7.5209 -5.9576 -2.0219
18 6 7.9970 -4.7992 -1.4419
19 1 7.6457 -3.9376 -2.0097
20 6 9.5268 -4.8205 -1.4418
21 7 10.0171 -4.7918 -2.8263
22 6 11.4855 -4.8118 -2.8653
23 6 11.9503 -4.7821 -4.2985
24 6 12.7855 -3.8530 -4.6979
25 17 13.3560 -2.6580 -3.5754
26 6 7.4822 -4.7020 0.0097
27 1 -0.4850 0.8400 -0.0004
28 1 3.6442 -3.4320 -0.8874
29 1 3.6435 -3.4308 0.8926
30 1 4.9989 -6.0109 1.0208
31 1 4.1091 -5.2462 -0.3125
32 1 6.2991 -7.3387 -0.4428
33 1 4.6864 -7.3592 -1.1953
34 1 5.9358 -6.7910 -3.0421
35 1 5.6547 -5.1587 -2.3869
36 1 9.9023 -3.9491 -0.9053
37 1 9.8775 -5.7283 -0.9509
38 1 9.6527 -3.9924 -3.3224
39 1 11.8748 -3.9406 -2.3386
40 1 11.8494 -5.7198 -2.3844
41 1 11.5957 -5.5258 -4.9967
42 1 13.1184 -3.8315 -5.7252
43 1 7.9700 -3.8645 0.5084
44 1 7.7154 -5.6257 0.5395
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001199923975.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:35:15
Heat of formation + Delta-G solvation = -81.686802 kcal
Electronic energy + Delta-G solvation = -26027.483084 eV
Core-core repulsion = 22131.862363 eV
Total energy + Delta-G solvation = -3895.620721 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.106 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.66953 -39.70095 -38.22593 -37.16622 -36.44184 -34.69218 -34.63777 -33.07796
-31.78629 -29.86594 -27.94484 -27.57734 -26.61736 -24.47258 -22.92972 -22.35157
-20.84504 -20.61544 -19.58911 -18.38553 -17.97871 -17.70170 -17.53131 -17.12118
-16.94794 -16.28698 -16.07578 -15.67436 -15.57807 -15.30580 -15.11546 -14.94051
-14.90843 -14.35162 -14.01565 -13.82667 -13.61481 -13.44237 -13.36566 -13.15581
-13.03398 -12.82945 -12.79320 -12.63157 -12.46799 -12.31062 -12.05743 -11.88914
-11.61091 -11.47452 -11.19175 -10.97918 -10.57324 -10.54468 -10.09728 -9.69898
-9.39343 -9.03099 -8.53306 -6.24576 0.92148 0.95058 1.29288 1.42409
1.43656 1.43891 1.51556 1.99367 2.22857 2.64606 2.67794 2.84897
3.14170 3.45936 3.78247 3.87740 3.89439 3.97094 4.04041 4.09338
4.22132 4.26388 4.32070 4.37419 4.41095 4.49585 4.59846 4.60268
4.65079 4.76236 4.78661 4.82812 4.95854 5.11147 5.15647 5.21968
5.30874 5.52646 5.69069 5.94387 6.09021 6.10103 6.28963 6.69142
6.91895 7.01317 8.58908
Molecular weight = 348.11amu
Principal moments of inertia in cm(-1)
A = 0.011386 B = 0.002413 C = 0.002083
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2458.577156 B =11600.220392 C =13440.690473
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.047 3.953
3 Si 0.913 3.087
4 H -0.263 1.263
5 H -0.259 1.259
6 H -0.238 1.238
7 C -0.527 4.527
8 H 0.064 0.936
9 S -0.178 6.178
10 C -0.106 4.106
11 C 0.527 3.473
12 O -0.558 6.558
13 N -0.602 5.602
14 C 0.093 3.907
15 C -0.153 4.153
16 C 0.068 3.932
17 O -0.375 6.375
18 C 0.105 3.895
19 H 0.022 0.978
20 C 0.077 3.923
21 N -0.680 5.680
22 C 0.073 3.927
23 C -0.135 4.135
24 C -0.109 4.109
25 Cl -0.114 7.114
26 C 0.083 3.917
27 H 0.277 0.723
28 H 0.110 0.890
29 H 0.112 0.888
30 H 0.089 0.911
31 H 0.086 0.914
32 H 0.089 0.911
33 H 0.113 0.887
34 H 0.108 0.892
35 H 0.031 0.969
36 H 0.047 0.953
37 H 0.095 0.905
38 H 0.339 0.661
39 H 0.042 0.958
40 H 0.091 0.909
41 H 0.154 0.846
42 H 0.171 0.829
43 H 0.077 0.923
44 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.286 -17.807 -6.349 29.994
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.159 4.159
3 Si 0.735 3.265
4 H -0.187 1.187
5 H -0.183 1.183
6 H -0.162 1.162
7 C -0.674 4.674
8 H 0.082 0.918
9 S 0.049 5.951
10 C -0.257 4.257
11 C 0.315 3.685
12 O -0.436 6.436
13 N -0.335 5.335
14 C -0.028 4.028
15 C -0.191 4.191
16 C -0.008 4.008
17 O -0.294 6.294
18 C 0.044 3.956
19 H 0.040 0.960
20 C -0.052 4.052
21 N -0.311 5.311
22 C -0.056 4.056
23 C -0.154 4.154
24 C -0.154 4.154
25 Cl -0.086 7.086
26 C -0.041 4.041
27 H 0.087 0.913
28 H 0.128 0.872
29 H 0.130 0.870
30 H 0.108 0.892
31 H 0.105 0.895
32 H 0.107 0.893
33 H 0.131 0.869
34 H 0.126 0.874
35 H 0.049 0.951
36 H 0.065 0.935
37 H 0.113 0.887
38 H 0.156 0.844
39 H 0.060 0.940
40 H 0.109 0.891
41 H 0.172 0.828
42 H 0.189 0.811
43 H 0.095 0.905
44 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 24.352 -17.102 -6.360 30.429
hybrid contribution -1.330 1.113 0.430 1.787
sum 23.022 -15.989 -5.930 28.650
Atomic orbital electron populations
1.70008 1.07210 1.29017 1.49061 1.25536 0.95268 1.02158 0.92932
0.85894 0.80682 0.79774 0.80188 1.18748 1.18291 1.16189 1.22423
0.90022 0.96715 1.58282 0.91807 1.84741 1.06712 1.06105 1.97560
1.23308 0.95891 0.99544 1.06961 1.20154 0.89654 0.83284 0.75426
1.90675 1.59229 1.43433 1.50282 1.47882 1.07256 1.05312 1.73068
1.22351 0.91753 0.86711 1.02016 1.22422 1.03429 0.97478 0.95769
1.22330 0.80360 0.99840 0.98314 1.86314 1.23436 1.39055 1.80585
1.21714 0.94356 0.87416 0.92084 0.96036 1.21843 0.91084 1.02172
0.90140 1.60375 1.07778 1.48627 1.14277 1.21224 0.87632 1.02243
0.94464 1.23248 0.96068 0.98027 0.98044 1.24919 1.01663 0.92137
0.96704 1.98368 1.88378 1.58296 1.63547 1.22282 0.79810 1.03818
0.98184 0.91342 0.87165 0.86986 0.89232 0.89544 0.89272 0.86907
0.87418 0.95081 0.93469 0.88663 0.84417 0.93952 0.89059 0.82823
0.81139 0.90508 0.87223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -55.38 13.97 21.65 0.30 -55.08 16
2 C 0.05 2.73 5.50 84.86 0.47 3.19 16
3 Si 0.91 44.97 27.74 68.60 1.90 46.88 16
4 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16
5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16
6 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16
7 C -0.53 -30.46 10.04 67.95 0.68 -29.78 16
8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16
9 S -0.18 -8.99 18.55 -56.49 -1.05 -10.04 16
10 C -0.11 -4.02 4.49 71.24 0.32 -3.70 16
11 C 0.53 18.43 7.65 87.66 0.67 19.11 16
12 O -0.56 -23.83 15.29 -3.04 -0.05 -23.88 16
13 N -0.60 -15.06 2.20 -818.92 -1.81 -16.86 16
14 C 0.09 1.65 6.00 86.38 0.52 2.17 16
15 C -0.15 -2.04 5.78 30.31 0.18 -1.87 16
16 C 0.07 1.21 6.37 71.50 0.46 1.67 16
17 O -0.38 -7.82 9.40 -117.84 -1.11 -8.93 16
18 C 0.10 2.29 2.81 31.04 0.09 2.38 16
19 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16
20 C 0.08 1.39 5.34 86.30 0.46 1.85 16
21 N -0.68 -12.00 6.43 -517.92 -3.33 -15.33 16
22 C 0.07 1.05 5.98 85.56 0.51 1.56 16
23 C -0.13 -1.59 9.78 25.49 0.25 -1.34 16
24 C -0.11 -1.26 10.82 67.62 0.73 -0.53 16
25 Cl -0.11 -1.81 26.97 -2.72 -0.07 -1.89 16
26 C 0.08 1.82 4.83 87.09 0.42 2.24 16
27 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16
28 H 0.11 3.84 7.41 -2.39 -0.02 3.83 16
29 H 0.11 3.90 8.04 -2.40 -0.02 3.88 16
30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16
31 H 0.09 1.62 5.88 -2.38 -0.01 1.61 16
32 H 0.09 1.09 8.01 -2.39 -0.02 1.07 16
33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16
34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16
35 H 0.03 0.70 7.41 -2.39 -0.02 0.68 16
36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16
37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16
38 H 0.34 6.48 8.72 -89.70 -0.78 5.70 16
39 H 0.04 0.69 6.01 -2.39 -0.01 0.67 16
40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
41 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16
42 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16
43 H 0.08 1.95 7.27 -2.39 -0.02 1.93 16
44 H 0.11 1.82 8.12 -2.39 -0.02 1.80 16
Total: -1.00 -72.97 383.21 0.73 -72.24
By element:
Atomic # 1 Polarization: 15.74 SS G_CDS: 0.19 Total: 15.93 kcal
Atomic # 6 Polarization: -8.79 SS G_CDS: 5.75 Total: -3.04 kcal
Atomic # 7 Polarization: -82.44 SS G_CDS: -4.83 Total: -87.27 kcal
Atomic # 8 Polarization: -31.65 SS G_CDS: -1.15 Total: -32.81 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.88 kcal
Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal
Atomic # 17 Polarization: -1.81 SS G_CDS: -0.07 Total: -1.89 kcal
Total: -72.97 0.73 -72.24 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001199923975.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.450 kcal
(2) G-P(sol) polarization free energy of solvation -72.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.419 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds