Wall clock time and date at job start Wed Apr 1 2020 04:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00179 * 2 1 4 4 H 1.48502 * 109.47354 * 240.00484 * 3 2 1 5 5 H 1.48499 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47337 * 120.00597 * 3 2 1 7 7 C 1.38817 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00007 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64827 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.83420 * 155.91464 * 10 9 7 12 12 C 1.55161 * 101.57977 * 37.00712 * 11 10 9 13 13 O 1.42893 * 110.72103 * 83.03910 * 12 11 10 14 14 C 1.53004 * 110.72031 * 206.13623 * 12 11 10 15 15 N 1.46499 * 109.47198 * 179.97438 * 14 12 11 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 12 17 17 O 1.21623 * 120.00244 * 359.72094 * 16 15 14 18 18 C 1.47308 * 119.99758 * 179.72404 * 16 15 14 19 19 C 1.38363 * 120.57441 * 359.97438 * 18 16 15 20 20 C 1.38859 * 121.15886 * 179.97438 * 19 18 16 21 21 C 1.35574 * 122.43481 * 0.02562 * 20 19 18 22 22 C 1.41637 * 120.89716 * 359.97438 * 21 20 19 23 23 N 1.32407 * 131.02984 * 180.02562 * 22 21 20 24 24 S 1.55551 * 109.37004 * 179.97438 * 23 22 21 25 25 N 1.55552 * 100.17847 * 0.02562 * 24 23 22 26 26 C 1.31856 * 109.44703 * 359.71433 * 25 24 23 27 27 C 1.47024 * 125.64438 * 180.02562 * 9 7 2 28 28 H 0.96994 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.36798 * 37.06990 * 10 9 7 30 30 H 1.09005 * 110.45956 * 274.79541 * 10 9 7 31 31 H 1.09001 * 111.00246 * 278.93823 * 11 10 9 32 32 H 1.08995 * 111.03888 * 155.09166 * 11 10 9 33 33 H 0.96704 * 114.00451 * 182.43888 * 13 12 11 34 34 H 1.09009 * 109.46730 * 59.99757 * 14 12 11 35 35 H 1.08998 * 109.46846 * 300.00302 * 14 12 11 36 36 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 37 37 H 1.08004 * 119.42257 * 359.97438 * 19 18 16 38 38 H 1.08001 * 118.78787 * 179.97438 * 20 19 18 39 39 H 1.07991 * 119.55275 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.87974 * 61.60365 * 27 9 7 41 41 H 1.08997 * 109.88589 * 300.43123 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1415 -2.5331 0.0005 11 6 -0.4021 -3.9323 -0.6110 12 6 0.7783 -4.7524 -0.0267 13 8 0.4729 -5.2088 1.2925 14 6 1.1224 -5.9315 -0.9391 15 7 2.2386 -6.6853 -0.3630 16 6 2.7197 -7.7704 -1.0014 17 8 2.2238 -8.1268 -2.0533 18 6 3.8460 -8.5249 -0.4252 19 6 4.4194 -8.1298 0.7704 20 6 5.4812 -8.8323 1.3248 21 6 6.0124 -9.9317 0.7356 22 6 5.4986 -10.4196 -0.4908 23 7 5.8559 -11.4573 -1.2316 24 16 4.9444 -11.5313 -2.4898 25 7 4.0303 -10.2977 -2.2400 26 6 4.3774 -9.7160 -1.1087 27 6 1.9318 -3.7275 -0.0005 28 1 -0.4849 0.8400 0.0004 29 1 -0.5997 -1.7588 -0.6147 30 1 -0.5283 -2.4861 1.0186 31 1 -0.3532 -3.8983 -1.6994 32 1 -1.3592 -4.3331 -0.2772 33 1 1.1929 -5.6951 1.7171 34 1 1.4059 -5.5585 -1.9234 35 1 0.2538 -6.5831 -1.0338 36 1 2.6343 -6.4009 0.4757 37 1 4.0344 -7.2598 1.2816 38 1 5.8999 -8.4898 2.2596 39 1 6.8386 -10.4424 1.2077 40 1 2.5288 -3.8642 0.9012 41 1 2.5577 -3.8512 -0.8843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278816859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:31 Heat of formation + Delta-G solvation = 36.431530 kcal Electronic energy + Delta-G solvation = -27573.411907 eV Core-core repulsion = 23581.805688 eV Total energy + Delta-G solvation = -3991.606219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.25343 -39.79293 -38.40437 -36.71583 -35.20232 -34.16822 -34.07571 -32.16579 -31.01108 -29.51680 -28.14009 -27.93363 -25.79375 -24.14249 -23.07390 -22.62742 -20.81578 -20.15384 -20.00700 -19.72954 -18.26829 -17.59031 -16.96769 -16.54735 -16.23300 -16.15381 -15.40639 -15.27438 -15.13809 -14.74954 -14.18271 -14.08213 -13.78002 -13.28149 -13.18723 -12.95738 -12.57299 -12.46994 -12.21399 -12.13259 -12.11378 -11.77212 -11.60171 -11.31383 -11.08286 -11.06273 -10.88083 -10.79713 -10.38568 -10.19383 -10.12317 -9.83171 -9.73753 -9.44726 -9.19062 -9.14732 -8.79974 -8.66950 -6.88254 -5.68243 -3.10794 -0.65740 0.94195 1.07484 1.11436 1.39481 2.59525 2.89314 3.35886 3.38527 3.42628 3.44275 3.75197 4.26998 4.34305 4.40902 4.44376 4.46475 4.61077 4.75657 4.86521 5.15064 5.30344 5.33884 5.39508 5.48296 5.61140 5.66197 5.78044 5.81223 5.86408 5.96144 6.21409 6.25817 6.38773 6.40382 6.47746 6.57640 6.60752 7.32601 7.53746 7.58443 7.82019 7.88418 8.10992 8.32367 9.18063 9.78535 10.42715 11.35429 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.002270 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.362933 B =12334.086979 C =12814.551657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.916 3.084 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.600 5.600 10 C 0.156 3.844 11 C -0.128 4.128 12 C 0.105 3.895 13 O -0.541 6.541 14 C 0.106 3.894 15 N -0.722 5.722 16 C 0.555 3.445 17 O -0.510 6.510 18 C -0.074 4.074 19 C -0.051 4.051 20 C -0.103 4.103 21 C -0.040 4.040 22 C 0.072 3.928 23 N -0.594 5.594 24 S 0.790 5.210 25 N -0.556 5.556 26 C 0.109 3.891 27 C 0.117 3.883 28 H 0.254 0.746 29 H 0.108 0.892 30 H 0.018 0.982 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.362 0.638 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.395 0.605 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.023 0.977 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.564 -22.968 1.436 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.326 5.326 10 C 0.031 3.969 11 C -0.167 4.167 12 C 0.064 3.936 13 O -0.345 6.345 14 C -0.017 4.017 15 N -0.375 5.375 16 C 0.341 3.659 17 O -0.385 6.385 18 C -0.084 4.084 19 C -0.076 4.076 20 C -0.127 4.127 21 C -0.065 4.065 22 C -0.088 4.088 23 N -0.445 5.445 24 S 0.837 5.163 25 N -0.404 5.404 26 C -0.053 4.053 27 C -0.010 4.010 28 H 0.064 0.936 29 H 0.126 0.874 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.208 0.792 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.041 0.959 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.551 -24.209 -1.270 26.056 hybrid contribution 1.314 1.837 1.973 2.999 sum 10.865 -22.373 0.703 24.881 Atomic orbital electron populations 1.69778 1.04905 1.25012 1.57166 1.24799 0.95740 0.97764 1.02210 0.86138 0.78401 0.82962 0.77876 1.21130 1.21517 1.21204 1.19007 0.90424 0.82380 1.43654 0.90569 1.44404 1.01981 0.99324 1.86862 1.21936 0.84442 0.91820 0.98667 1.23055 0.95535 0.98274 0.99847 1.22589 0.97973 0.91050 0.82033 1.86656 1.42993 1.75910 1.28970 1.22116 0.88642 0.93050 0.97917 1.45854 1.36342 1.28888 1.26465 1.17794 0.82828 0.80544 0.84775 1.90869 1.58850 1.67204 1.21578 1.20289 0.98529 0.94018 0.95569 1.21405 0.94500 0.98740 0.92939 1.20603 0.96250 0.94896 1.00965 1.20349 0.99479 0.95930 0.90715 1.21258 0.96580 0.92302 0.98647 1.72236 1.33387 1.25065 1.13767 1.78764 1.04401 1.16718 1.16428 1.72190 1.31549 1.15379 1.21309 1.21945 0.95531 0.97551 0.90265 1.21931 0.93615 0.87198 0.98273 0.93567 0.87430 0.96362 0.90530 0.91019 0.79212 0.90072 0.90526 0.76900 0.83756 0.83553 0.83889 0.95933 0.95110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.21 10.27 -15.06 -0.15 -6.36 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -15.03 3.39 -170.07 -0.58 -15.60 16 10 C 0.16 3.77 5.88 -2.53 -0.01 3.76 16 11 C -0.13 -2.42 6.26 -24.58 -0.15 -2.57 16 12 C 0.11 1.74 0.92 -88.78 -0.08 1.65 16 13 O -0.54 -8.51 13.09 -35.23 -0.46 -8.97 16 14 C 0.11 1.54 4.74 -4.04 -0.02 1.52 16 15 N -0.72 -8.66 5.15 -61.42 -0.32 -8.98 16 16 C 0.55 7.75 7.77 -12.57 -0.10 7.65 16 17 O -0.51 -9.23 16.09 5.26 0.08 -9.15 16 18 C -0.07 -0.84 6.07 -102.50 -0.62 -1.46 16 19 C -0.05 -0.37 9.49 -39.31 -0.37 -0.74 16 20 C -0.10 -0.58 9.82 -40.30 -0.40 -0.98 16 21 C -0.04 -0.29 10.03 -39.24 -0.39 -0.68 16 22 C 0.07 0.76 7.17 -83.18 -0.60 0.16 16 23 N -0.59 -6.15 11.45 25.61 0.29 -5.86 16 24 S 0.79 7.08 23.60 -107.50 -2.54 4.54 16 25 N -0.56 -7.37 10.68 26.55 0.28 -7.08 16 26 C 0.11 1.37 7.06 -81.05 -0.57 0.80 16 27 C 0.12 2.27 6.29 -3.06 -0.02 2.25 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.36 3.99 7.79 45.56 0.35 4.34 16 34 H 0.08 1.27 8.06 -51.92 -0.42 0.85 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.40 3.57 5.30 -40.82 -0.22 3.35 16 37 H 0.14 0.64 6.37 -52.48 -0.33 0.31 16 38 H 0.15 0.35 8.06 -52.49 -0.42 -0.08 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 41 H 0.03 0.60 7.76 -51.93 -0.40 0.20 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -36.94 355.61 -9.74 -46.68 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.82 Total: 3.69 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -3.59 Total: 4.65 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 0.24 Total: -63.57 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.38 Total: -18.12 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 7.08 SS G_CDS: -2.54 Total: 4.54 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.94 -9.74 -46.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278816859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.116 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds