Wall clock time and date at job start Wed Apr 1 2020 05:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00233 * 2 1 4 4 H 1.48510 * 109.47082 * 270.00186 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99847 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00090 * 3 2 1 7 7 C 1.38798 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 179.72124 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00732 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00309 * 180.02562 * 13 11 10 15 15 H 1.09005 * 110.64273 * 328.14673 * 14 13 11 16 16 C 1.55158 * 110.72163 * 91.47879 * 14 13 11 17 17 C 1.54904 * 101.58377 * 153.86709 * 16 14 13 18 18 N 1.47431 * 104.83125 * 322.99463 * 17 16 14 19 19 C 1.34782 * 125.64526 * 204.16117 * 18 17 16 20 20 O 1.21277 * 119.99630 * 179.97438 * 19 18 17 21 21 C 1.50695 * 120.00264 * 359.96341 * 19 18 17 22 22 H 1.09007 * 112.84616 * 311.19108 * 21 19 18 23 23 C 1.53781 * 113.61976 * 82.49641 * 21 19 18 24 24 C 1.53784 * 87.08104 * 139.98306 * 23 21 19 25 25 C 1.53778 * 113.61814 * 180.02562 * 21 19 18 26 26 F 1.39907 * 113.61159 * 334.56171 * 25 21 19 27 27 F 1.39891 * 113.61965 * 105.46397 * 25 21 19 28 28 C 1.47015 * 108.70504 * 24.12881 * 18 17 16 29 29 H 0.97000 * 119.99427 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 31 31 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 32 32 H 0.97005 * 120.00069 * 0.02562 * 13 11 10 33 33 H 1.08998 * 111.00764 * 271.94349 * 16 14 13 34 34 H 1.09002 * 111.00225 * 35.79472 * 16 14 13 35 35 H 1.09001 * 110.37153 * 204.15725 * 17 16 14 36 36 H 1.09001 * 110.36722 * 81.83058 * 17 16 14 37 37 H 1.08992 * 113.61813 * 254.53696 * 23 21 19 38 38 H 1.08999 * 113.61138 * 25.43383 * 23 21 19 39 39 H 1.09005 * 113.61273 * 220.02386 * 24 23 21 40 40 H 1.09001 * 113.68885 * 89.13098 * 24 23 21 41 41 H 1.09001 * 109.88336 * 239.52869 * 28 18 17 42 42 H 1.08994 * 110.01541 * 118.42883 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0069 10 6 4.0865 -2.9846 -0.0117 11 6 5.5729 -3.2326 -0.0178 12 8 6.3440 -2.2965 -0.0183 13 7 6.0456 -4.4947 -0.0216 14 6 7.4905 -4.7359 -0.0270 15 1 8.0104 -3.9436 -0.5657 16 6 8.0308 -4.8657 1.4217 17 6 9.2863 -5.7474 1.2076 18 7 8.9013 -6.7026 0.1526 19 6 9.4558 -7.9141 -0.0506 20 8 9.0574 -8.6197 -0.9530 21 6 10.5708 -8.3920 0.8434 22 1 11.3595 -7.6502 0.9696 23 6 10.0806 -9.0037 2.1665 24 6 11.1797 -10.0650 1.9920 25 6 11.0944 -9.7916 0.4807 26 9 10.1533 -10.5880 -0.1806 27 9 12.3393 -9.7763 -0.1574 28 6 7.8118 -6.1150 -0.6406 29 1 -0.4849 0.8401 -0.0004 30 1 3.6473 -3.4334 0.8793 31 1 3.6399 -3.4299 -0.9007 32 1 5.4289 -5.2436 -0.0208 33 1 8.3025 -3.8907 1.8263 34 1 7.3072 -5.3661 2.0652 35 1 9.5386 -6.2778 2.1258 36 1 10.1270 -5.1368 0.8780 37 1 10.2323 -8.3558 3.0297 38 1 9.0701 -9.4086 2.1123 39 1 10.8646 -11.0701 2.2726 40 1 12.1355 -9.7823 2.4333 41 1 6.9314 -6.7559 -0.5932 42 1 8.1275 -5.9951 -1.6769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283836735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:35 Heat of formation + Delta-G solvation = -140.257434 kcal Electronic energy + Delta-G solvation = -27708.560864 eV Core-core repulsion = 23258.603650 eV Total energy + Delta-G solvation = -4449.957214 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.16918 -47.48860 -40.84420 -39.57360 -38.11439 -37.22968 -34.34119 -32.47526 -31.37757 -29.86145 -28.90085 -27.20384 -25.65234 -25.59019 -23.88787 -21.88176 -21.00714 -20.68561 -19.85138 -18.54003 -17.99887 -17.55565 -17.18235 -16.87713 -16.54772 -16.29522 -15.71167 -15.47876 -15.10737 -14.99106 -14.74251 -14.54219 -14.16189 -13.98678 -13.78006 -13.72736 -13.68828 -13.45262 -13.03947 -12.97922 -12.83254 -12.60395 -12.41050 -12.20189 -12.03812 -11.82301 -11.80427 -11.33472 -11.30635 -11.23589 -11.04223 -10.66118 -10.19888 -9.90246 -9.66334 -9.24554 -9.09408 -9.03086 -8.55886 -6.96825 -6.32372 -4.04833 2.01955 2.23846 2.71255 2.81735 2.94133 3.14070 3.24051 3.30570 3.46570 3.57671 3.63979 3.69415 3.76518 4.00346 4.13210 4.29361 4.34815 4.59617 4.65027 4.69103 4.76873 4.81008 4.82432 4.85905 4.93524 5.01562 5.06627 5.08233 5.18128 5.32892 5.42765 5.45448 5.59814 5.68311 5.70495 5.80372 5.95089 6.37184 6.93521 7.43892 7.63003 7.90588 8.34122 8.38311 9.13535 10.76805 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.036765 B = 0.001742 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.411817 B =16068.948772 C =16262.083051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.729 5.729 14 C 0.137 3.863 15 H 0.109 0.891 16 C -0.146 4.146 17 C 0.097 3.903 18 N -0.614 5.614 19 C 0.537 3.463 20 O -0.517 6.517 21 C -0.166 4.166 22 H 0.141 0.859 23 C -0.118 4.118 24 C -0.164 4.164 25 C 0.280 3.720 26 F -0.158 7.158 27 F -0.188 7.188 28 C 0.102 3.898 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.402 0.598 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.147 -19.758 6.990 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.321 3.679 12 O -0.390 6.390 13 N -0.383 5.383 14 C 0.031 3.969 15 H 0.127 0.873 16 C -0.185 4.185 17 C -0.026 4.026 18 N -0.349 5.349 19 C 0.324 3.676 20 O -0.392 6.392 21 C -0.188 4.188 22 H 0.158 0.842 23 C -0.156 4.156 24 C -0.202 4.202 25 C 0.243 3.757 26 F -0.138 7.138 27 F -0.169 7.169 28 C -0.021 4.021 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.237 0.763 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.135 0.865 41 H 0.095 0.905 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 25.071 -18.567 6.423 31.852 hybrid contribution -1.075 -0.664 -0.231 1.285 sum 23.996 -19.232 6.192 31.368 Atomic orbital electron populations 1.69939 1.05913 1.27797 1.47911 1.24722 0.94467 0.98989 0.93172 0.86729 0.81841 0.83275 0.79948 1.19194 1.19924 1.15960 1.22307 0.88192 0.97560 1.58936 0.89351 1.84781 1.09413 0.99821 1.97439 1.23284 0.93700 1.04586 1.05978 1.20317 0.90699 0.82068 0.74776 1.90702 1.58713 1.42115 1.47466 1.45926 1.06259 1.08458 1.77677 1.21845 0.82645 0.96367 0.96045 0.87311 1.23256 0.96634 1.01016 0.97575 1.22457 0.98222 0.90996 0.90897 1.48348 1.37016 1.16294 1.33234 1.19692 0.83132 0.79975 0.84773 1.90825 1.62401 1.54005 1.31977 1.24047 0.99398 0.97746 0.97597 0.84162 1.22785 0.99874 0.97482 0.95471 1.24081 1.01885 1.02602 0.91587 1.21754 0.74491 0.90606 0.88876 1.93118 1.63607 1.74449 1.82661 1.93027 1.42244 1.96800 1.84820 1.22123 0.90711 0.93496 0.95758 0.91908 0.88331 0.88342 0.76318 0.88691 0.89850 0.90012 0.90500 0.88110 0.88158 0.88056 0.86492 0.90532 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.18 13.97 55.49 0.78 -25.40 16 2 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.38 27.73 -169.99 -4.71 16.66 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 7 C -0.52 -14.73 10.04 30.94 0.31 -14.42 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.44 18.55 -107.50 -1.99 -5.44 16 10 C -0.12 -2.26 6.16 36.01 0.22 -2.04 16 11 C 0.54 8.56 7.85 -10.99 -0.09 8.47 16 12 O -0.52 -10.11 15.51 5.56 0.09 -10.03 16 13 N -0.73 -7.98 5.18 -52.03 -0.27 -8.25 16 14 C 0.14 1.28 3.32 -66.10 -0.22 1.06 16 15 H 0.11 1.18 7.55 -51.93 -0.39 0.79 16 16 C -0.15 -1.06 6.77 -24.58 -0.17 -1.23 16 17 C 0.10 0.52 6.66 -2.53 -0.02 0.51 16 18 N -0.61 -4.95 3.33 -170.52 -0.57 -5.52 16 19 C 0.54 5.23 7.33 -10.99 -0.08 5.15 16 20 O -0.52 -7.34 15.07 5.56 0.08 -7.25 16 21 C -0.17 -1.02 3.02 -90.96 -0.27 -1.30 16 22 H 0.14 0.52 8.09 -51.93 -0.42 0.10 16 23 C -0.12 -0.43 7.19 -25.92 -0.19 -0.62 16 24 C -0.16 -0.61 7.87 -25.90 -0.20 -0.82 16 25 C 0.28 2.24 3.02 -25.90 -0.08 2.16 16 26 F -0.16 -1.82 15.20 2.25 0.03 -1.79 16 27 F -0.19 -1.77 17.41 2.25 0.04 -1.73 16 28 C 0.10 0.90 6.62 -3.07 -0.02 0.88 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 31 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 32 H 0.40 3.43 8.37 -40.82 -0.34 3.09 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.26 7.22 -51.93 -0.37 -0.12 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.12 8.05 -51.93 -0.42 -0.30 16 38 H 0.10 0.47 8.09 -51.93 -0.42 0.05 16 39 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.08 0.67 7.72 -51.93 -0.40 0.27 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -36.81 370.80 -7.56 -44.37 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.73 Total: -1.69 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.90 Total: 0.47 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: -0.06 Total: -39.17 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.17 Total: -17.28 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.07 Total: -3.52 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.71 Total: 16.66 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.81 -7.56 -44.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283836735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.886 kcal (2) G-P(sol) polarization free energy of solvation -36.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds