Wall clock time and date at job start Wed Apr 1 2020 05:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00233 * 2 1 4 4 H 1.48510 * 109.47082 * 270.00186 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99847 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00090 * 3 2 1 7 7 C 1.38798 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 179.72124 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00732 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00309 * 180.02562 * 13 11 10 15 15 H 1.09005 * 110.64273 * 328.14673 * 14 13 11 16 16 C 1.55158 * 110.72163 * 91.47879 * 14 13 11 17 17 C 1.54904 * 101.58377 * 153.86709 * 16 14 13 18 18 N 1.47431 * 104.83125 * 322.99463 * 17 16 14 19 19 C 1.34782 * 125.64526 * 204.16117 * 18 17 16 20 20 O 1.21277 * 119.99630 * 179.97438 * 19 18 17 21 21 C 1.50695 * 120.00264 * 359.96341 * 19 18 17 22 22 H 1.09007 * 112.84616 * 311.19108 * 21 19 18 23 23 C 1.53781 * 113.61976 * 82.49641 * 21 19 18 24 24 C 1.53784 * 87.08104 * 139.98306 * 23 21 19 25 25 C 1.53778 * 113.61814 * 180.02562 * 21 19 18 26 26 F 1.39907 * 113.61159 * 334.56171 * 25 21 19 27 27 F 1.39891 * 113.61965 * 105.46397 * 25 21 19 28 28 C 1.47015 * 108.70504 * 24.12881 * 18 17 16 29 29 H 0.97000 * 119.99427 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 31 31 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 32 32 H 0.97005 * 120.00069 * 0.02562 * 13 11 10 33 33 H 1.08998 * 111.00764 * 271.94349 * 16 14 13 34 34 H 1.09002 * 111.00225 * 35.79472 * 16 14 13 35 35 H 1.09001 * 110.37153 * 204.15725 * 17 16 14 36 36 H 1.09001 * 110.36722 * 81.83058 * 17 16 14 37 37 H 1.08992 * 113.61813 * 254.53696 * 23 21 19 38 38 H 1.08999 * 113.61138 * 25.43383 * 23 21 19 39 39 H 1.09005 * 113.61273 * 220.02386 * 24 23 21 40 40 H 1.09001 * 113.68885 * 89.13098 * 24 23 21 41 41 H 1.09001 * 109.88336 * 239.52869 * 28 18 17 42 42 H 1.08994 * 110.01541 * 118.42883 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0069 10 6 4.0865 -2.9846 -0.0117 11 6 5.5729 -3.2326 -0.0178 12 8 6.3440 -2.2965 -0.0183 13 7 6.0456 -4.4947 -0.0216 14 6 7.4905 -4.7359 -0.0270 15 1 8.0104 -3.9436 -0.5657 16 6 8.0308 -4.8657 1.4217 17 6 9.2863 -5.7474 1.2076 18 7 8.9013 -6.7026 0.1526 19 6 9.4558 -7.9141 -0.0506 20 8 9.0574 -8.6197 -0.9530 21 6 10.5708 -8.3920 0.8434 22 1 11.3595 -7.6502 0.9696 23 6 10.0806 -9.0037 2.1665 24 6 11.1797 -10.0650 1.9920 25 6 11.0944 -9.7916 0.4807 26 9 10.1533 -10.5880 -0.1806 27 9 12.3393 -9.7763 -0.1574 28 6 7.8118 -6.1150 -0.6406 29 1 -0.4849 0.8401 -0.0004 30 1 3.6473 -3.4334 0.8793 31 1 3.6399 -3.4299 -0.9007 32 1 5.4289 -5.2436 -0.0208 33 1 8.3025 -3.8907 1.8263 34 1 7.3072 -5.3661 2.0652 35 1 9.5386 -6.2778 2.1258 36 1 10.1270 -5.1368 0.8780 37 1 10.2323 -8.3558 3.0297 38 1 9.0701 -9.4086 2.1123 39 1 10.8646 -11.0701 2.2726 40 1 12.1355 -9.7823 2.4333 41 1 6.9314 -6.7559 -0.5932 42 1 8.1275 -5.9951 -1.6769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283836735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:34 Heat of formation + Delta-G solvation = -166.615074 kcal Electronic energy + Delta-G solvation = -27709.703818 eV Core-core repulsion = 23258.603650 eV Total energy + Delta-G solvation = -4451.100167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.80139 -48.15785 -41.57409 -40.64104 -38.84052 -37.89446 -35.36841 -34.66486 -32.32668 -30.76163 -29.81073 -27.94179 -27.70645 -26.00406 -24.51213 -22.69098 -21.75821 -21.53968 -20.45687 -19.90613 -19.10944 -18.24115 -18.14765 -17.62747 -17.41397 -17.20026 -17.06709 -16.61231 -16.40030 -16.12840 -15.74699 -15.25680 -15.08475 -14.94627 -14.74974 -14.70550 -14.53347 -14.41440 -14.29233 -13.85396 -13.61196 -13.54691 -13.33497 -13.06229 -12.97281 -12.82133 -12.73432 -12.56003 -12.46866 -12.18270 -11.93038 -11.85904 -11.73511 -11.16558 -11.05289 -10.89604 -10.53490 -10.20789 -9.81815 -8.98522 -8.50939 -6.21662 0.98040 1.32583 1.34829 1.44866 1.50829 1.54187 1.69498 2.23762 2.27649 2.46217 2.71611 2.73204 2.87404 3.11618 3.27180 3.38242 3.42020 3.54879 3.79227 3.83668 3.99965 4.13662 4.24390 4.26045 4.31249 4.46181 4.48433 4.48708 4.54528 4.69285 4.72772 4.76623 4.88522 4.95403 5.06911 5.12386 5.18371 5.40827 5.71094 6.12254 6.28682 6.40317 6.93726 6.94127 7.14301 8.61389 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.036765 B = 0.001742 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.411817 B =16068.948772 C =16262.083051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.043 3.957 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.234 1.234 7 C -0.530 4.530 8 H 0.061 0.939 9 S -0.171 6.171 10 C -0.114 4.114 11 C 0.543 3.457 12 O -0.555 6.555 13 N -0.706 5.706 14 C 0.137 3.863 15 H 0.095 0.905 16 C -0.140 4.140 17 C 0.099 3.901 18 N -0.610 5.610 19 C 0.530 3.470 20 O -0.573 6.573 21 C -0.160 4.160 22 H 0.172 0.828 23 C -0.107 4.107 24 C -0.145 4.145 25 C 0.245 3.755 26 F -0.188 7.188 27 F -0.203 7.203 28 C 0.106 3.894 29 H 0.276 0.724 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.416 0.584 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.076 0.924 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.443 -19.970 9.171 34.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.162 4.162 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.185 1.185 6 H -0.158 1.158 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.055 5.945 10 C -0.265 4.265 11 C 0.329 3.671 12 O -0.432 6.432 13 N -0.360 5.360 14 C 0.031 3.969 15 H 0.113 0.887 16 C -0.179 4.179 17 C -0.022 4.022 18 N -0.344 5.344 19 C 0.319 3.681 20 O -0.452 6.452 21 C -0.181 4.181 22 H 0.189 0.811 23 C -0.144 4.144 24 C -0.182 4.182 25 C 0.208 3.792 26 F -0.168 7.168 27 F -0.184 7.184 28 C -0.018 4.018 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.254 0.746 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.135 0.865 36 H 0.109 0.891 37 H 0.157 0.843 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.163 0.837 41 H 0.095 0.905 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 27.373 -18.810 8.633 34.316 hybrid contribution -1.769 -0.764 -0.962 2.154 sum 25.604 -19.574 7.670 33.129 Atomic orbital electron populations 1.70024 1.07367 1.29008 1.49143 1.25600 0.95296 1.02372 0.92927 0.85846 0.80746 0.79483 0.80158 1.18851 1.18458 1.15750 1.22477 0.90420 0.96634 1.58218 0.92038 1.84657 1.06220 1.06029 1.97582 1.23281 0.95938 0.99714 1.07522 1.19850 0.89293 0.83120 0.74864 1.90695 1.59090 1.43601 1.49826 1.45671 1.07611 1.07142 1.75552 1.21915 0.81024 0.96049 0.97935 0.88727 1.23212 0.97581 1.01467 0.95595 1.22674 0.97525 0.90517 0.91504 1.48415 1.36339 1.16212 1.33420 1.20392 0.83528 0.79676 0.84496 1.90801 1.64303 1.55632 1.34501 1.24240 0.98787 0.97276 0.97840 0.81109 1.22838 0.99061 0.97472 0.95059 1.24129 1.03355 1.03192 0.87559 1.22684 0.73651 0.92008 0.90823 1.93048 1.64785 1.75419 1.83596 1.92990 1.43010 1.96940 1.85413 1.21981 0.91264 0.93161 0.95426 0.91411 0.86614 0.87062 0.74615 0.88967 0.89165 0.86523 0.89056 0.84276 0.89497 0.87607 0.83685 0.90538 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.32 13.97 21.65 0.30 -55.02 16 2 C 0.04 2.51 5.50 84.86 0.47 2.98 16 3 Si 0.92 44.15 27.73 68.60 1.90 46.05 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.23 -11.11 6.74 99.48 0.67 -10.44 16 7 C -0.53 -30.23 10.04 67.95 0.68 -29.55 16 8 H 0.06 3.71 8.03 -2.91 -0.02 3.69 16 9 S -0.17 -8.32 18.55 -56.49 -1.05 -9.37 16 10 C -0.11 -3.99 6.16 71.24 0.44 -3.55 16 11 C 0.54 16.62 7.85 87.66 0.69 17.31 16 12 O -0.55 -21.24 15.51 -3.02 -0.05 -21.29 16 13 N -0.71 -14.19 5.18 -436.92 -2.26 -16.45 16 14 C 0.14 2.31 3.32 46.18 0.15 2.47 16 15 H 0.09 1.96 7.55 -2.38 -0.02 1.94 16 16 C -0.14 -1.61 6.77 31.98 0.22 -1.39 16 17 C 0.10 0.69 6.66 86.85 0.58 1.27 16 18 N -0.61 -8.56 3.33 -811.81 -2.70 -11.27 16 19 C 0.53 9.68 7.33 87.65 0.64 10.32 16 20 O -0.57 -16.66 15.07 -3.02 -0.05 -16.70 16 21 C -0.16 -1.55 3.02 -11.02 -0.03 -1.58 16 22 H 0.17 0.54 8.09 -2.38 -0.02 0.52 16 23 C -0.11 -0.37 7.19 31.12 0.22 -0.14 16 24 C -0.14 -0.63 7.87 31.14 0.25 -0.38 16 25 C 0.25 3.66 3.02 31.13 0.09 3.75 16 26 F -0.19 -4.49 15.20 44.97 0.68 -3.81 16 27 F -0.20 -3.69 17.41 44.97 0.78 -2.91 16 28 C 0.11 1.73 6.62 86.73 0.57 2.31 16 29 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.12 3.68 8.14 -2.40 -0.02 3.66 16 31 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 32 H 0.42 6.18 8.37 -92.70 -0.78 5.41 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.12 0.07 7.22 -2.39 -0.02 0.06 16 36 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.14 -0.53 8.05 -2.39 -0.02 -0.55 16 38 H 0.09 0.59 8.09 -2.39 -0.02 0.57 16 39 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.08 1.27 7.72 -2.39 -0.02 1.25 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -84.17 370.80 2.79 -81.39 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.25 Total: 5.57 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 4.97 Total: 3.80 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -4.66 Total: -82.74 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.09 Total: -37.99 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 1.47 Total: -6.71 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.05 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.05 Total: -9.37 kcal Total: -84.17 2.79 -81.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283836735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.227 kcal (2) G-P(sol) polarization free energy of solvation -84.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds