Wall clock time and date at job start Wed Apr 1 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27658 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27573 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.28000 * 3 2 1 7 7 C 1.38805 * 119.99846 * 180.28098 * 2 1 3 8 8 H 1.07999 * 119.99864 * 179.72445 * 7 2 1 9 9 S 1.76198 * 119.99843 * 359.71985 * 7 2 1 10 10 C 1.81005 * 99.99931 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47415 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99879 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00401 * 179.97438 * 11 10 9 14 14 C 1.46845 * 120.37696 * 359.72012 * 13 11 10 15 15 C 1.53805 * 108.57200 * 123.09484 * 14 13 11 16 16 C 1.53192 * 108.71104 * 51.51260 * 15 14 13 17 17 C 1.52849 * 117.65118 * 89.90527 * 16 15 14 18 18 C 1.52821 * 117.71120 * 158.76133 * 16 15 14 19 19 H 1.08991 * 117.49995 * 144.87434 * 18 16 15 20 20 N 1.46504 * 117.50134 * 359.86170 * 18 16 15 21 21 C 1.34771 * 119.99703 * 154.99853 * 20 18 16 22 22 O 1.21281 * 120.00018 * 0.02562 * 21 20 18 23 23 C 1.50701 * 120.00213 * 179.97438 * 21 20 18 24 24 F 1.39909 * 109.46922 * 54.99993 * 23 21 20 25 25 F 1.39895 * 109.47534 * 175.00141 * 23 21 20 26 26 C 1.53184 * 115.07697 * 304.43290 * 16 15 14 27 27 C 1.46834 * 120.38553 * 180.02562 * 13 11 10 28 28 H 0.97000 * 120.00210 * 359.72456 * 1 2 3 29 29 H 1.09002 * 109.46892 * 300.00109 * 10 9 7 30 30 H 1.09005 * 109.47161 * 59.99890 * 10 9 7 31 31 H 1.09005 * 109.58380 * 242.92574 * 14 13 11 32 32 H 1.08996 * 109.58146 * 3.33053 * 14 13 11 33 33 H 1.08992 * 109.71653 * 291.69008 * 15 14 13 34 34 H 1.08993 * 109.51566 * 171.21863 * 15 14 13 35 35 H 1.08998 * 117.49829 * 215.18224 * 17 16 15 36 36 H 1.08991 * 117.50964 * 0.23676 * 17 16 15 37 37 H 0.96997 * 119.99920 * 335.00316 * 20 18 16 38 38 H 1.09007 * 109.46893 * 295.00659 * 23 21 20 39 39 H 1.08999 * 109.58689 * 295.65576 * 26 16 15 40 40 H 1.09002 * 109.58077 * 175.22981 * 26 16 15 41 41 H 1.09004 * 109.58335 * 356.67341 * 27 13 11 42 42 H 1.09004 * 109.58206 * 116.94056 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4920 2.0498 -1.4001 5 1 1.4506 2.6510 0.7059 6 1 3.5508 1.4385 0.6941 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0104 9 16 1.1293 -2.7280 -0.0059 10 6 2.5158 -3.8915 -0.0139 11 6 1.9874 -5.3027 -0.0143 12 8 0.7911 -5.5023 -0.0102 13 7 2.8440 -6.3431 -0.0204 14 6 4.2940 -6.1111 -0.0327 15 6 4.9137 -6.8185 1.1844 16 6 4.4385 -8.2747 1.2009 17 6 5.2854 -9.3058 0.4553 18 6 5.2736 -9.2859 1.9855 19 1 4.7424 -10.0893 2.4957 20 7 6.4733 -8.7903 2.6649 21 6 6.9586 -9.4449 3.7384 22 8 6.4024 -10.4443 4.1417 23 6 8.1930 -8.9356 4.4369 24 9 8.0014 -7.6002 4.8078 25 9 8.4344 -9.7067 5.5789 26 6 2.9181 -8.4617 1.1905 27 6 2.3383 -7.7216 -0.0215 28 1 -0.4850 0.8400 0.0040 29 1 3.1210 -3.7294 -0.9058 30 1 3.1279 -3.7334 0.8742 31 1 4.7210 -6.5159 -0.9503 32 1 4.4932 -5.0410 0.0242 33 1 4.5963 -6.3202 2.1003 34 1 6.0005 -6.7896 1.1079 35 1 4.7619 -10.1227 -0.0414 36 1 6.1856 -8.9503 -0.0458 37 1 6.9182 -7.9912 2.3421 38 1 9.0470 -9.0066 3.7633 39 1 2.4933 -8.0520 2.1068 40 1 2.6811 -9.5232 1.1181 41 1 1.2502 -7.7117 0.0427 42 1 2.6455 -8.2227 -0.9395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283902841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:13 Heat of formation + Delta-G solvation = -143.132146 kcal Electronic energy + Delta-G solvation = -27844.301443 eV Core-core repulsion = 23394.219572 eV Total energy + Delta-G solvation = -4450.081871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.68766 -47.71472 -40.82548 -39.78586 -38.44308 -35.78152 -33.81422 -32.45249 -31.80389 -30.30961 -28.87528 -28.21554 -25.52482 -24.02193 -23.65432 -22.86483 -21.36808 -20.27078 -19.16496 -18.49624 -18.31864 -18.01222 -17.59748 -16.80703 -16.61757 -15.72216 -15.66399 -15.41631 -15.17732 -14.82846 -14.79898 -14.47387 -14.27702 -14.03773 -14.00403 -13.81564 -13.61419 -13.52474 -13.08914 -12.81255 -12.74267 -12.53569 -12.41523 -12.25862 -11.87887 -11.51996 -11.25504 -11.08527 -11.05418 -11.01243 -10.77664 -10.62085 -10.28503 -9.82804 -9.41471 -9.38140 -9.09029 -8.53722 -8.25284 -6.52970 -6.23976 -3.94873 1.50903 1.93388 2.89134 2.98496 3.20246 3.21498 3.23872 3.28253 3.30611 3.45185 3.55768 3.96714 4.08595 4.10711 4.17082 4.21809 4.30087 4.44106 4.78288 4.89432 4.99108 5.04926 5.11156 5.20526 5.27498 5.31632 5.32862 5.41329 5.45852 5.57597 5.63084 5.76917 5.79181 5.82319 5.89535 5.98878 6.06624 6.57431 6.59975 7.24660 7.50321 7.56918 8.32436 8.51879 9.21220 10.83422 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.002262 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.656547 B =12377.672407 C =13995.252559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.619 5.619 14 C 0.113 3.887 15 C -0.100 4.100 16 C -0.119 4.119 17 C -0.175 4.175 18 C 0.081 3.919 19 H 0.141 0.859 20 N -0.683 5.683 21 C 0.476 3.524 22 O -0.499 6.499 23 C 0.259 3.741 24 F -0.185 7.185 25 F -0.174 7.174 26 C -0.096 4.096 27 C 0.117 3.883 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.408 0.592 38 H 0.139 0.861 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.991 -20.256 2.244 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.322 3.678 12 O -0.390 6.390 13 N -0.355 5.355 14 C -0.010 4.010 15 C -0.139 4.139 16 C -0.120 4.120 17 C -0.213 4.213 18 C -0.025 4.025 19 H 0.159 0.841 20 N -0.334 5.334 21 C 0.258 3.742 22 O -0.372 6.372 23 C 0.202 3.798 24 F -0.167 7.167 25 F -0.155 7.155 26 C -0.135 4.135 27 C -0.006 4.006 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.244 0.756 38 H 0.156 0.844 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.636 -21.158 2.602 27.041 hybrid contribution 2.399 1.716 -0.043 2.950 sum 19.036 -19.443 2.558 27.330 Atomic orbital electron populations 1.70018 1.05957 1.27482 1.46773 1.24998 0.95030 0.99040 0.94531 0.86168 0.79412 0.81582 0.78338 1.20273 1.20744 1.19690 1.22845 0.94845 0.91613 1.59031 0.90964 1.85433 1.04969 0.96369 1.96690 1.23553 1.06495 0.95467 1.04614 1.20357 0.86250 0.86252 0.74908 1.90693 1.15214 1.85209 1.47889 1.48017 1.06177 1.05805 1.75514 1.21730 0.80310 1.01602 0.97399 1.21613 0.99467 0.92736 1.00069 1.22004 0.94445 0.92339 1.03214 1.23656 1.02189 1.01792 0.93698 1.21889 0.88330 1.00956 0.91282 0.84140 1.45276 1.28629 1.29736 1.29793 1.21077 0.86225 0.85262 0.81685 1.90832 1.57849 1.24429 1.64084 1.21622 0.98688 0.73984 0.85522 1.93094 1.96481 1.34295 1.92798 1.93078 1.94935 1.74893 1.52631 1.21567 0.91234 1.00807 0.99874 1.21457 1.00861 0.81285 0.96986 0.92161 0.89298 0.89310 0.91257 0.88873 0.90199 0.91113 0.87471 0.88123 0.75571 0.84425 0.90554 0.90384 0.88548 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -2.95 4.48 36.00 0.16 -2.79 16 11 C 0.53 9.74 7.71 -10.99 -0.08 9.65 16 12 O -0.52 -11.49 15.24 5.56 0.08 -11.40 16 13 N -0.62 -8.01 2.91 -172.41 -0.50 -8.51 16 14 C 0.11 1.05 6.38 -3.44 -0.02 1.02 16 15 C -0.10 -0.72 5.39 -26.21 -0.14 -0.86 16 16 C -0.12 -0.83 1.94 -154.48 -0.30 -1.12 16 17 C -0.18 -0.91 9.86 -26.79 -0.26 -1.18 16 18 C 0.08 0.54 6.14 -68.00 -0.42 0.13 16 19 H 0.14 1.15 7.40 -51.93 -0.38 0.77 16 20 N -0.68 -4.00 5.35 -53.88 -0.29 -4.29 16 21 C 0.48 3.76 7.63 -10.99 -0.08 3.68 16 22 O -0.50 -6.06 16.19 5.56 0.09 -5.97 16 23 C 0.26 1.46 5.72 36.01 0.21 1.67 16 24 F -0.19 -1.30 17.32 2.25 0.04 -1.26 16 25 F -0.17 -1.54 16.95 2.25 0.04 -1.50 16 26 C -0.10 -0.82 5.83 -26.44 -0.15 -0.97 16 27 C 0.12 1.27 6.44 -3.66 -0.02 1.24 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.09 1.59 7.86 -51.92 -0.41 1.19 16 30 H 0.09 1.60 7.76 -51.91 -0.40 1.20 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.90 5.86 -51.93 -0.30 0.60 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.32 6.75 -51.93 -0.35 -0.03 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.41 1.41 7.12 -40.82 -0.29 1.12 16 38 H 0.14 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 41 H 0.10 1.25 6.96 -51.93 -0.36 0.89 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -37.06 372.05 -7.78 -44.84 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.43 Total: -2.30 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.93 Total: -2.24 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.06 Total: -37.99 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.17 Total: -17.37 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.06 -7.78 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283902841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.293 kcal (2) G-P(sol) polarization free energy of solvation -37.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds