Wall clock time and date at job start Wed Apr 1 2020 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27658 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27573 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.28000 * 3 2 1 7 7 C 1.38805 * 119.99846 * 180.28098 * 2 1 3 8 8 H 1.07999 * 119.99864 * 179.72445 * 7 2 1 9 9 S 1.76198 * 119.99843 * 359.71985 * 7 2 1 10 10 C 1.81005 * 99.99931 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47415 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99879 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00401 * 179.97438 * 11 10 9 14 14 C 1.46845 * 120.37696 * 359.72012 * 13 11 10 15 15 C 1.53805 * 108.57200 * 123.09484 * 14 13 11 16 16 C 1.53192 * 108.71104 * 51.51260 * 15 14 13 17 17 C 1.52849 * 117.65118 * 89.90527 * 16 15 14 18 18 C 1.52821 * 117.71120 * 158.76133 * 16 15 14 19 19 H 1.08991 * 117.49995 * 144.87434 * 18 16 15 20 20 N 1.46504 * 117.50134 * 359.86170 * 18 16 15 21 21 C 1.34771 * 119.99703 * 154.99853 * 20 18 16 22 22 O 1.21281 * 120.00018 * 0.02562 * 21 20 18 23 23 C 1.50701 * 120.00213 * 179.97438 * 21 20 18 24 24 F 1.39909 * 109.46922 * 54.99993 * 23 21 20 25 25 F 1.39895 * 109.47534 * 175.00141 * 23 21 20 26 26 C 1.53184 * 115.07697 * 304.43290 * 16 15 14 27 27 C 1.46834 * 120.38553 * 180.02562 * 13 11 10 28 28 H 0.97000 * 120.00210 * 359.72456 * 1 2 3 29 29 H 1.09002 * 109.46892 * 300.00109 * 10 9 7 30 30 H 1.09005 * 109.47161 * 59.99890 * 10 9 7 31 31 H 1.09005 * 109.58380 * 242.92574 * 14 13 11 32 32 H 1.08996 * 109.58146 * 3.33053 * 14 13 11 33 33 H 1.08992 * 109.71653 * 291.69008 * 15 14 13 34 34 H 1.08993 * 109.51566 * 171.21863 * 15 14 13 35 35 H 1.08998 * 117.49829 * 215.18224 * 17 16 15 36 36 H 1.08991 * 117.50964 * 0.23676 * 17 16 15 37 37 H 0.96997 * 119.99920 * 335.00316 * 20 18 16 38 38 H 1.09007 * 109.46893 * 295.00659 * 23 21 20 39 39 H 1.08999 * 109.58689 * 295.65576 * 26 16 15 40 40 H 1.09002 * 109.58077 * 175.22981 * 26 16 15 41 41 H 1.09004 * 109.58335 * 356.67341 * 27 13 11 42 42 H 1.09004 * 109.58206 * 116.94056 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4920 2.0498 -1.4001 5 1 1.4506 2.6510 0.7059 6 1 3.5508 1.4385 0.6941 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0104 9 16 1.1293 -2.7280 -0.0059 10 6 2.5158 -3.8915 -0.0139 11 6 1.9874 -5.3027 -0.0143 12 8 0.7911 -5.5023 -0.0102 13 7 2.8440 -6.3431 -0.0204 14 6 4.2940 -6.1111 -0.0327 15 6 4.9137 -6.8185 1.1844 16 6 4.4385 -8.2747 1.2009 17 6 5.2854 -9.3058 0.4553 18 6 5.2736 -9.2859 1.9855 19 1 4.7424 -10.0893 2.4957 20 7 6.4733 -8.7903 2.6649 21 6 6.9586 -9.4449 3.7384 22 8 6.4024 -10.4443 4.1417 23 6 8.1930 -8.9356 4.4369 24 9 8.0014 -7.6002 4.8078 25 9 8.4344 -9.7067 5.5789 26 6 2.9181 -8.4617 1.1905 27 6 2.3383 -7.7216 -0.0215 28 1 -0.4850 0.8400 0.0040 29 1 3.1210 -3.7294 -0.9058 30 1 3.1279 -3.7334 0.8742 31 1 4.7210 -6.5159 -0.9503 32 1 4.4932 -5.0410 0.0242 33 1 4.5963 -6.3202 2.1003 34 1 6.0005 -6.7896 1.1079 35 1 4.7619 -10.1227 -0.0414 36 1 6.1856 -8.9503 -0.0458 37 1 6.9182 -7.9912 2.3421 38 1 9.0470 -9.0066 3.7633 39 1 2.4933 -8.0520 2.1068 40 1 2.6811 -9.5232 1.1181 41 1 1.2502 -7.7117 0.0427 42 1 2.6455 -8.2227 -0.9395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283902841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:12 Heat of formation + Delta-G solvation = -169.393835 kcal Electronic energy + Delta-G solvation = -27845.440235 eV Core-core repulsion = 23394.219572 eV Total energy + Delta-G solvation = -4451.220663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.19559 -48.24346 -41.56104 -40.74202 -39.36661 -36.78740 -34.58203 -34.51924 -32.69249 -31.28008 -29.93173 -28.86370 -27.65835 -24.82349 -24.48590 -23.38853 -21.96714 -21.27868 -19.94743 -19.65055 -19.05310 -18.77406 -18.53139 -18.00728 -17.26806 -16.92933 -16.85905 -16.62271 -16.28627 -15.84117 -15.81359 -15.48454 -15.05361 -15.02837 -14.61940 -14.57214 -14.50192 -14.46961 -14.38569 -14.09521 -13.50288 -13.37702 -13.22503 -13.16133 -13.03512 -12.88431 -12.82927 -12.59813 -12.21485 -11.99551 -11.76167 -11.65853 -11.23869 -11.13679 -10.85964 -10.84856 -10.25134 -10.03050 -9.52264 -8.67180 -8.34020 -6.12523 0.93044 1.26743 1.43270 1.44691 1.47331 1.57181 1.58718 2.13434 2.28167 2.75587 2.84799 3.00275 3.03966 3.25696 3.51203 3.55745 3.63305 3.68372 3.72771 3.86817 3.89648 4.09427 4.26125 4.29588 4.38550 4.46052 4.53585 4.60550 4.68630 4.76499 4.81869 4.93578 4.96564 5.02502 5.19014 5.27723 5.29914 5.42201 5.61066 6.09588 6.20238 6.31339 6.76394 7.07165 7.16596 8.75220 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.002262 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.656547 B =12377.672407 C =13995.252559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.158 6.158 10 C -0.122 4.122 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.605 5.605 14 C 0.104 3.896 15 C -0.096 4.096 16 C -0.127 4.127 17 C -0.146 4.146 18 C 0.071 3.929 19 H 0.121 0.879 20 N -0.668 5.668 21 C 0.472 3.528 22 O -0.551 6.551 23 C 0.261 3.739 24 F -0.193 7.193 25 F -0.195 7.195 26 C -0.091 4.091 27 C 0.115 3.885 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.422 0.578 38 H 0.197 0.803 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.171 -20.505 1.140 30.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.690 4.690 8 H 0.103 0.897 9 S 0.069 5.931 10 C -0.273 4.273 11 C 0.318 3.682 12 O -0.449 6.449 13 N -0.339 5.339 14 C -0.018 4.018 15 C -0.134 4.134 16 C -0.128 4.128 17 C -0.184 4.184 18 C -0.035 4.035 19 H 0.139 0.861 20 N -0.319 5.319 21 C 0.255 3.745 22 O -0.428 6.428 23 C 0.204 3.796 24 F -0.174 7.174 25 F -0.177 7.177 26 C -0.129 4.129 27 C -0.007 4.007 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.262 0.738 38 H 0.213 0.787 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.887 -21.416 1.479 29.952 hybrid contribution 1.131 1.647 0.286 2.018 sum 22.018 -19.770 1.764 29.643 Atomic orbital electron populations 1.70194 1.08049 1.28578 1.48090 1.26156 0.95961 1.03405 0.93780 0.84941 0.78248 0.75923 0.78801 1.19258 1.20530 1.17963 1.23183 0.95334 0.91784 1.58738 0.89731 1.85653 1.10913 0.99494 1.97023 1.23362 1.03236 0.94350 1.06340 1.20180 0.86056 0.86832 0.75179 1.90675 1.17474 1.85823 1.50916 1.48047 1.07447 1.05376 1.72991 1.22102 0.77689 1.02160 0.99858 1.21593 1.01541 0.92167 0.98064 1.21889 0.93244 0.92741 1.04971 1.23759 1.02049 1.00493 0.92122 1.21795 0.88607 1.00388 0.92672 0.86077 1.45184 1.27962 1.29736 1.29036 1.21548 0.86546 0.84657 0.81733 1.90813 1.59556 1.26836 1.65607 1.22072 0.99338 0.72894 0.85263 1.93078 1.96606 1.34818 1.92917 1.93033 1.94977 1.75544 1.54099 1.21475 0.92658 1.01329 0.97434 1.21618 0.99432 0.80326 0.99357 0.92053 0.87195 0.87574 0.88203 0.89154 0.92173 0.87337 0.86556 0.85770 0.73846 0.78672 0.93138 0.88466 0.91521 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.54 -30.54 9.50 67.96 0.65 -29.89 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 9 S -0.16 -8.76 20.57 -56.49 -1.16 -9.92 16 10 C -0.12 -4.73 4.48 71.23 0.32 -4.41 16 11 C 0.53 19.51 7.71 87.66 0.68 20.18 16 12 O -0.57 -26.66 15.24 -3.03 -0.05 -26.70 16 13 N -0.60 -14.86 2.91 -817.78 -2.38 -17.25 16 14 C 0.10 1.56 6.38 86.58 0.55 2.12 16 15 C -0.10 -1.04 5.39 30.93 0.17 -0.88 16 16 C -0.13 -1.40 1.94 -52.17 -0.10 -1.50 16 17 C -0.15 -0.87 9.86 30.56 0.30 -0.57 16 18 C 0.07 0.78 6.14 44.94 0.28 1.05 16 19 H 0.12 1.89 7.40 -2.39 -0.02 1.87 16 20 N -0.67 -5.88 5.35 -442.77 -2.37 -8.25 16 21 C 0.47 6.64 7.63 87.66 0.67 7.31 16 22 O -0.55 -13.29 16.19 -3.03 -0.05 -13.34 16 23 C 0.26 2.29 5.72 71.24 0.41 2.70 16 24 F -0.19 -2.25 17.32 44.97 0.78 -1.47 16 25 F -0.20 -3.22 16.95 44.97 0.76 -2.46 16 26 C -0.09 -1.44 5.83 30.79 0.18 -1.26 16 27 C 0.11 2.37 6.44 86.45 0.56 2.93 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.11 3.78 7.86 -2.39 -0.02 3.76 16 30 H 0.11 3.72 7.76 -2.39 -0.02 3.70 16 31 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.09 1.45 5.86 -2.39 -0.01 1.43 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.39 6.75 -2.39 -0.02 0.38 16 35 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.42 1.12 7.12 -92.71 -0.66 0.46 16 38 H 0.20 -0.53 8.14 -2.38 -0.02 -0.55 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 41 H 0.07 1.81 6.96 -2.38 -0.02 1.79 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -87.36 372.05 3.37 -83.98 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.41 Total: 7.22 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.11 Total: -1.10 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -4.46 Total: -81.18 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.10 Total: -40.04 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 1.54 Total: -3.93 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -87.36 3.37 -83.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283902841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.412 kcal (2) G-P(sol) polarization free energy of solvation -87.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds