Wall clock time and date at job start Wed Apr 1 2020 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.38078 * 125.89775 * 63.83884 * 3 2 1 5 5 C 1.39360 * 107.51967 * 179.97438 * 4 3 2 6 6 C 1.38011 * 107.48075 * 359.97438 * 5 4 3 7 7 C 1.47053 * 125.91869 * 179.97438 * 6 5 4 8 8 O 1.21652 * 120.00115 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99956 * 180.02562 * 7 6 5 10 10 C 1.47065 * 136.06042 * 4.75040 * 9 7 6 11 11 C 1.53505 * 87.98622 * 207.08834 * 10 9 7 12 12 C 1.47069 * 136.05375 * 184.70236 * 9 7 6 13 13 H 1.09001 * 113.47279 * 267.74942 * 12 9 7 14 14 C 1.52998 * 113.46988 * 38.13373 * 12 9 7 15 15 N 1.46500 * 109.47147 * 185.13875 * 14 12 9 16 16 C 1.34786 * 119.99842 * 175.28775 * 15 14 12 17 17 O 1.21275 * 119.99641 * 359.72714 * 16 15 14 18 18 C 1.50701 * 119.99501 * 179.72987 * 16 15 14 19 19 S 1.81005 * 109.46500 * 180.02562 * 18 16 15 20 20 C 1.76207 * 99.99717 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99644 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00201 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99760 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47407 * 89.99758 * 24 22 20 26 26 H 1.48500 * 109.47126 * 209.99937 * 24 22 20 27 27 H 1.48507 * 109.47392 * 329.99604 * 24 22 20 28 28 N 1.36722 * 125.89365 * 244.11510 * 3 2 1 29 29 H 0.97002 * 125.68630 * 0.02562 * 28 3 2 30 30 H 1.08006 * 126.24566 * 359.96887 * 4 3 2 31 31 H 1.07995 * 126.26491 * 180.02562 * 5 4 3 32 32 H 1.09000 * 113.46404 * 321.86540 * 10 9 7 33 33 H 1.08995 * 113.46602 * 92.25014 * 10 9 7 34 34 H 1.09001 * 114.20145 * 220.34607 * 11 10 9 35 35 H 1.08994 * 114.20653 * 87.51885 * 11 10 9 36 36 H 1.09005 * 109.47388 * 65.14030 * 14 12 9 37 37 H 1.08993 * 109.47191 * 305.14240 * 14 12 9 38 38 H 0.96996 * 120.00246 * 355.01836 * 15 14 12 39 39 H 1.08998 * 109.47359 * 299.99212 * 18 16 15 40 40 H 1.08997 * 109.47777 * 60.00166 * 18 16 15 41 41 H 0.97010 * 119.99890 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3777 -0.4921 -1.0039 5 6 4.7002 -0.2973 -0.6098 6 6 4.6783 0.3119 0.6283 7 6 5.8554 0.7013 1.4191 8 8 6.9737 0.4906 0.9893 9 7 5.6951 1.2916 2.6200 10 6 4.5595 1.6259 3.4926 11 6 5.4039 2.7753 4.0603 12 6 6.5792 1.8842 3.6350 13 1 6.8907 1.1784 4.4049 14 6 7.7521 2.6659 3.0399 15 7 8.6388 3.1117 4.1175 16 6 9.7939 3.7407 3.8230 17 8 10.1015 3.9332 2.6658 18 6 10.7031 4.2047 4.9317 19 16 12.1610 5.0073 4.2201 20 6 13.0234 5.4383 5.6951 21 1 12.6031 5.1899 6.6584 22 6 14.2422 6.0980 5.6187 23 7 14.7541 6.4011 4.4446 24 14 15.1567 6.5542 7.1823 25 1 16.0639 5.4434 7.5673 26 1 15.9534 7.7855 6.9484 27 1 14.1799 6.7968 8.2743 28 7 3.3693 0.4845 0.9965 29 1 3.0626 0.8859 1.8246 30 1 3.0468 -0.9460 -1.9264 31 1 5.5811 -0.5719 -1.1710 32 1 3.6779 1.9630 2.9476 33 1 4.3317 0.8509 4.2245 34 1 5.3108 2.9081 5.1382 35 1 5.3241 3.7071 3.5006 36 1 7.3736 3.5331 2.4987 37 1 8.3065 2.0240 2.3553 38 1 8.3927 2.9577 5.0430 39 1 10.1709 4.9145 5.5650 40 1 11.0147 3.3477 5.5287 41 1 15.6061 6.8618 4.3913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285833883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:27 Heat of formation + Delta-G solvation = 53.569234 kcal Electronic energy + Delta-G solvation = -25943.612923 eV Core-core repulsion = 21952.749851 eV Total energy + Delta-G solvation = -3990.863073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16265 -40.84156 -39.03186 -38.21572 -37.06032 -34.53031 -32.43104 -32.17932 -31.22263 -30.12841 -29.67399 -27.82450 -25.48918 -24.72194 -23.70093 -22.57934 -21.24886 -20.86882 -20.41100 -19.18551 -18.02686 -17.80473 -16.90669 -16.56767 -15.88772 -15.79158 -15.40594 -15.22409 -15.16180 -14.80633 -14.55873 -14.29224 -14.14434 -13.94109 -13.79409 -13.57750 -13.50889 -13.28594 -13.19984 -13.00194 -12.81440 -12.57011 -12.54893 -12.17358 -11.78806 -11.20080 -11.06559 -11.02767 -10.76439 -10.49608 -9.82273 -9.80354 -9.47260 -9.40890 -9.07446 -8.94810 -8.91855 -8.23393 -6.50134 -6.21656 -3.92428 0.35331 1.57108 1.58758 1.98000 2.42535 2.77864 2.80713 3.05307 3.08783 3.22113 3.28047 3.30927 3.32027 3.58401 3.69471 3.76146 4.20037 4.25717 4.29614 4.45721 4.53255 4.54920 4.61141 4.67742 4.98813 5.13468 5.13837 5.15093 5.25769 5.40331 5.49318 5.61769 5.64025 5.87350 5.88488 5.94450 6.10139 6.11933 6.39334 6.52335 6.76398 7.02662 7.54867 7.59052 7.64796 8.34826 8.59279 9.23505 10.85723 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.033460 B = 0.001611 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.618088 B =17376.826530 C =17926.833078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.274 3.726 3 C 0.086 3.914 4 C -0.121 4.121 5 C -0.111 4.111 6 C 0.004 3.996 7 C 0.613 3.387 8 O -0.501 6.501 9 N -0.645 5.645 10 C 0.090 3.910 11 C -0.148 4.148 12 C 0.129 3.871 13 H 0.105 0.895 14 C 0.114 3.886 15 N -0.737 5.737 16 C 0.532 3.468 17 O -0.512 6.512 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 N -0.517 5.517 29 H 0.420 0.580 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.599 -13.525 -1.818 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.042 4.042 3 C -0.032 4.032 4 C -0.149 4.149 5 C -0.136 4.136 6 C -0.114 4.114 7 C 0.402 3.598 8 O -0.374 6.374 9 N -0.383 5.383 10 C -0.033 4.033 11 C -0.185 4.185 12 C 0.026 3.974 13 H 0.123 0.877 14 C -0.011 4.011 15 N -0.393 5.393 16 C 0.318 3.682 17 O -0.386 6.386 18 C -0.303 4.303 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 N -0.117 5.117 29 H 0.262 0.738 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.061 -13.263 -4.167 31.316 hybrid contribution 0.223 0.110 3.227 3.237 sum -27.839 -13.153 -0.940 30.804 Atomic orbital electron populations 1.81358 1.11149 1.08600 1.05962 1.24309 0.90793 0.94108 0.94990 1.15616 0.83218 1.10882 0.93440 1.21323 0.91486 1.03223 0.98909 1.21359 0.97943 1.00636 0.93702 1.20581 0.82011 1.10198 0.98584 1.16599 0.87388 0.76655 0.79154 1.90951 1.23764 1.53112 1.69577 1.49616 1.11518 1.60181 1.16953 1.23147 0.90824 0.97282 0.92084 1.23608 0.94408 0.97422 1.03092 1.22914 0.92368 0.93523 0.88611 0.87687 1.21426 0.90237 0.98677 0.90728 1.45822 1.21933 1.62248 1.09257 1.20320 0.80552 0.76750 0.90584 1.90727 1.72734 1.53968 1.21126 1.23520 1.02281 1.04333 1.00150 1.85457 1.14056 1.72534 1.11269 1.22866 1.08297 1.44251 0.93051 0.90920 1.24989 0.96393 0.95015 0.97161 1.70020 1.18665 1.38250 1.23281 0.86170 0.79408 0.78097 0.81818 1.20270 1.20756 1.19724 1.42238 1.05282 1.46738 1.17443 0.73811 0.82181 0.81792 0.91066 0.88545 0.88138 0.87764 0.91194 0.89494 0.76895 0.89177 0.89166 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -3.46 18.54 41.83 0.78 -2.68 16 2 C 0.27 1.78 15.89 -22.48 -0.36 1.43 16 3 C 0.09 0.46 6.93 -83.82 -0.58 -0.12 16 4 C -0.12 -0.61 10.80 -39.22 -0.42 -1.03 16 5 C -0.11 -0.74 10.60 -39.25 -0.42 -1.15 16 6 C 0.00 0.03 7.01 -82.03 -0.57 -0.55 16 7 C 0.61 5.92 7.93 -12.69 -0.10 5.82 16 8 O -0.50 -7.02 16.44 5.23 0.09 -6.93 16 9 N -0.65 -4.47 3.56 -178.84 -0.64 -5.10 16 10 C 0.09 0.23 7.50 -8.50 -0.06 0.17 16 11 C -0.15 -0.50 8.02 -26.21 -0.21 -0.71 16 12 C 0.13 0.86 4.07 -72.39 -0.29 0.57 16 13 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 14 C 0.11 1.31 5.49 -4.04 -0.02 1.29 16 15 N -0.74 -9.04 5.55 -60.29 -0.33 -9.38 16 16 C 0.53 9.73 7.85 -10.98 -0.09 9.65 16 17 O -0.51 -11.81 15.86 5.56 0.09 -11.72 16 18 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 24 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 N -0.52 -2.47 5.94 -6.96 -0.04 -2.52 16 29 H 0.42 1.05 5.72 -40.82 -0.23 0.82 16 30 H 0.16 0.45 8.06 -52.48 -0.42 0.03 16 31 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.07 0.06 6.09 -51.93 -0.32 -0.25 16 33 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.10 0.43 7.94 -51.93 -0.41 0.02 16 36 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 37 H 0.09 1.32 7.09 -51.93 -0.37 0.95 16 38 H 0.40 3.35 8.48 -40.82 -0.35 3.01 16 39 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -39.08 379.91 -8.14 -47.21 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.59 Total: -1.37 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.71 Total: -0.25 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.50 Total: -45.03 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.08 -8.14 -47.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285833883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.784 kcal (2) G-P(sol) polarization free energy of solvation -39.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds