Wall clock time and date at job start Wed Apr 1 2020 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.38078 * 125.89775 * 63.83884 * 3 2 1 5 5 C 1.39360 * 107.51967 * 179.97438 * 4 3 2 6 6 C 1.38011 * 107.48075 * 359.97438 * 5 4 3 7 7 C 1.47053 * 125.91869 * 179.97438 * 6 5 4 8 8 O 1.21652 * 120.00115 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99956 * 180.02562 * 7 6 5 10 10 C 1.47065 * 136.06042 * 4.75040 * 9 7 6 11 11 C 1.53505 * 87.98622 * 207.08834 * 10 9 7 12 12 C 1.47069 * 136.05375 * 184.70236 * 9 7 6 13 13 H 1.09001 * 113.47279 * 267.74942 * 12 9 7 14 14 C 1.52998 * 113.46988 * 38.13373 * 12 9 7 15 15 N 1.46500 * 109.47147 * 185.13875 * 14 12 9 16 16 C 1.34786 * 119.99842 * 175.28775 * 15 14 12 17 17 O 1.21275 * 119.99641 * 359.72714 * 16 15 14 18 18 C 1.50701 * 119.99501 * 179.72987 * 16 15 14 19 19 S 1.81005 * 109.46500 * 180.02562 * 18 16 15 20 20 C 1.76207 * 99.99717 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99644 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00201 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99760 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47407 * 89.99758 * 24 22 20 26 26 H 1.48500 * 109.47126 * 209.99937 * 24 22 20 27 27 H 1.48507 * 109.47392 * 329.99604 * 24 22 20 28 28 N 1.36722 * 125.89365 * 244.11510 * 3 2 1 29 29 H 0.97002 * 125.68630 * 0.02562 * 28 3 2 30 30 H 1.08006 * 126.24566 * 359.96887 * 4 3 2 31 31 H 1.07995 * 126.26491 * 180.02562 * 5 4 3 32 32 H 1.09000 * 113.46404 * 321.86540 * 10 9 7 33 33 H 1.08995 * 113.46602 * 92.25014 * 10 9 7 34 34 H 1.09001 * 114.20145 * 220.34607 * 11 10 9 35 35 H 1.08994 * 114.20653 * 87.51885 * 11 10 9 36 36 H 1.09005 * 109.47388 * 65.14030 * 14 12 9 37 37 H 1.08993 * 109.47191 * 305.14240 * 14 12 9 38 38 H 0.96996 * 120.00246 * 355.01836 * 15 14 12 39 39 H 1.08998 * 109.47359 * 299.99212 * 18 16 15 40 40 H 1.08997 * 109.47777 * 60.00166 * 18 16 15 41 41 H 0.97010 * 119.99890 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3777 -0.4921 -1.0039 5 6 4.7002 -0.2973 -0.6098 6 6 4.6783 0.3119 0.6283 7 6 5.8554 0.7013 1.4191 8 8 6.9737 0.4906 0.9893 9 7 5.6951 1.2916 2.6200 10 6 4.5595 1.6259 3.4926 11 6 5.4039 2.7753 4.0603 12 6 6.5792 1.8842 3.6350 13 1 6.8907 1.1784 4.4049 14 6 7.7521 2.6659 3.0399 15 7 8.6388 3.1117 4.1175 16 6 9.7939 3.7407 3.8230 17 8 10.1015 3.9332 2.6658 18 6 10.7031 4.2047 4.9317 19 16 12.1610 5.0073 4.2201 20 6 13.0234 5.4383 5.6951 21 1 12.6031 5.1899 6.6584 22 6 14.2422 6.0980 5.6187 23 7 14.7541 6.4011 4.4446 24 14 15.1567 6.5542 7.1823 25 1 16.0639 5.4434 7.5673 26 1 15.9534 7.7855 6.9484 27 1 14.1799 6.7968 8.2743 28 7 3.3693 0.4845 0.9965 29 1 3.0626 0.8859 1.8246 30 1 3.0468 -0.9460 -1.9264 31 1 5.5811 -0.5719 -1.1710 32 1 3.6779 1.9630 2.9476 33 1 4.3317 0.8509 4.2245 34 1 5.3108 2.9081 5.1382 35 1 5.3241 3.7071 3.5006 36 1 7.3736 3.5331 2.4987 37 1 8.3065 2.0240 2.3553 38 1 8.3927 2.9577 5.0430 39 1 10.1709 4.9145 5.5650 40 1 11.0147 3.3477 5.5287 41 1 15.6061 6.8618 4.3913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285833883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:27 Heat of formation + Delta-G solvation = 23.550364 kcal Electronic energy + Delta-G solvation = -25944.914639 eV Core-core repulsion = 21952.749851 eV Total energy + Delta-G solvation = -3992.164789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.66277 -41.42142 -40.40117 -38.95572 -37.65163 -35.77743 -34.56895 -32.70251 -31.91726 -31.35545 -30.15235 -28.84372 -27.61737 -25.27048 -24.37357 -23.02376 -21.94926 -21.70558 -21.24024 -19.95260 -19.63180 -18.47452 -17.89540 -17.73447 -16.88008 -16.86328 -16.65256 -16.46007 -16.00618 -15.78348 -15.67751 -15.23484 -14.95337 -14.77722 -14.62928 -14.54966 -14.37568 -14.13600 -14.03258 -13.77122 -13.63256 -13.52361 -13.33531 -13.15084 -12.98233 -12.86991 -12.60882 -12.53750 -11.81061 -11.67282 -11.23237 -11.12830 -10.99563 -10.25112 -10.24190 -10.18255 -10.01597 -9.42836 -8.65927 -8.32933 -6.11555 -0.17703 1.04865 1.06545 1.24516 1.41219 1.44242 1.52995 1.60251 1.62373 1.92768 2.15651 2.28547 2.31748 2.36047 2.84455 3.01439 3.17148 3.33664 3.37867 3.69715 3.87102 3.99857 4.00380 4.03709 4.12734 4.31222 4.32921 4.41142 4.48226 4.52723 4.67834 4.78414 4.87544 4.98518 5.08819 5.20326 5.34661 5.43399 5.43713 5.63320 6.01453 6.21452 6.26341 6.47722 6.49476 6.88829 7.08265 7.24950 8.76336 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.033460 B = 0.001611 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.618088 B =17376.826530 C =17926.833078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.300 3.700 3 C 0.091 3.909 4 C -0.112 4.112 5 C -0.123 4.123 6 C -0.005 4.005 7 C 0.605 3.395 8 O -0.562 6.562 9 N -0.649 5.649 10 C 0.092 3.908 11 C -0.133 4.133 12 C 0.124 3.876 13 H 0.127 0.873 14 C 0.118 3.882 15 N -0.704 5.704 16 C 0.532 3.468 17 O -0.570 6.570 18 C -0.125 4.125 19 S -0.160 6.160 20 C -0.545 4.545 21 H 0.086 0.914 22 C 0.012 3.988 23 N -0.913 5.913 24 Si 1.000 3.000 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.255 1.255 28 N -0.502 5.502 29 H 0.431 0.569 30 H 0.183 0.817 31 H 0.160 0.840 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.422 0.578 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.271 -14.084 1.401 33.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.015 4.015 3 C -0.027 4.027 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.124 4.124 7 C 0.396 3.604 8 O -0.440 6.440 9 N -0.385 5.385 10 C -0.029 4.029 11 C -0.170 4.170 12 C 0.021 3.979 13 H 0.145 0.855 14 C -0.007 4.007 15 N -0.359 5.359 16 C 0.318 3.682 17 O -0.448 6.448 18 C -0.277 4.277 19 S 0.068 5.932 20 C -0.692 4.692 21 H 0.104 0.896 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.822 3.178 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.179 1.179 28 N -0.103 5.103 29 H 0.276 0.724 30 H 0.201 0.799 31 H 0.178 0.822 32 H 0.109 0.891 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.260 0.740 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -30.839 -13.830 -0.851 33.808 hybrid contribution 0.945 0.229 2.207 2.412 sum -29.893 -13.600 1.356 32.870 Atomic orbital electron populations 1.81396 1.12211 1.09959 1.07257 1.24204 0.90561 0.92933 0.93791 1.15546 0.82658 1.10859 0.93651 1.21576 0.90474 1.02437 0.99553 1.21502 0.98694 1.00852 0.93834 1.20293 0.82189 1.11157 0.98728 1.16944 0.87196 0.76277 0.79952 1.90918 1.25968 1.55887 1.71209 1.49811 1.13552 1.58607 1.16483 1.23497 0.90109 0.97660 0.91664 1.23607 0.91717 0.96658 1.05044 1.23150 0.91497 0.94527 0.88725 0.85504 1.21409 0.91106 0.98060 0.90108 1.45432 1.19846 1.59646 1.10984 1.20185 0.81796 0.76981 0.89279 1.90717 1.74325 1.56617 1.23122 1.23345 0.99075 1.04918 1.00317 1.85709 1.19014 1.74271 1.14255 1.23215 1.08686 1.44183 0.93157 0.89589 1.26150 0.97397 0.94690 1.01004 1.70198 1.19253 1.39332 1.26144 0.84934 0.77993 0.77787 0.77130 1.19415 1.20467 1.17914 1.42089 1.04180 1.46240 1.17766 0.72446 0.79935 0.82245 0.89057 0.85468 0.84763 0.88594 0.92383 0.93734 0.74006 0.86496 0.86912 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.94 18.54 19.00 0.35 -6.58 16 2 C 0.30 3.33 15.89 88.33 1.40 4.73 16 3 C 0.09 0.78 6.93 39.59 0.27 1.06 16 4 C -0.11 -0.95 10.80 22.50 0.24 -0.71 16 5 C -0.12 -1.60 10.60 22.49 0.24 -1.36 16 6 C -0.01 -0.07 7.01 40.58 0.28 0.21 16 7 C 0.61 11.87 7.93 86.56 0.69 12.56 16 8 O -0.56 -17.00 16.44 -4.20 -0.07 -17.07 16 9 N -0.65 -8.00 3.56 -837.96 -2.99 -10.99 16 10 C 0.09 0.11 7.50 83.18 0.62 0.73 16 11 C -0.13 -0.37 8.02 30.93 0.25 -0.12 16 12 C 0.12 1.40 4.07 41.79 0.17 1.57 16 13 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 14 C 0.12 2.73 5.49 86.38 0.47 3.20 16 15 N -0.70 -16.38 5.55 -463.06 -2.57 -18.95 16 16 C 0.53 19.52 7.85 87.66 0.69 20.20 16 17 O -0.57 -27.58 15.86 -3.01 -0.05 -27.63 16 18 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 19 S -0.16 -8.88 20.57 -56.49 -1.16 -10.04 16 20 C -0.54 -30.79 9.50 67.95 0.65 -30.15 16 21 H 0.09 4.45 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.69 5.49 84.86 0.47 1.16 16 23 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 24 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 28 N -0.50 -3.75 5.94 -175.93 -1.05 -4.80 16 29 H 0.43 0.86 5.72 -92.71 -0.53 0.33 16 30 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 31 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.09 -0.22 6.09 -2.39 -0.01 -0.24 16 33 H 0.13 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.13 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.10 0.51 7.94 -2.39 -0.02 0.49 16 36 H 0.06 1.48 7.88 -2.38 -0.02 1.46 16 37 H 0.04 1.45 7.09 -2.39 -0.02 1.44 16 38 H 0.42 5.73 8.48 -92.71 -0.79 4.94 16 39 H 0.12 3.86 8.14 -2.40 -0.02 3.84 16 40 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 41 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -92.78 379.91 1.46 -91.31 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -0.20 Total: 6.84 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 6.88 Total: 8.71 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -5.97 Total: -97.30 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.12 Total: -44.70 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -92.78 1.46 -91.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285833883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.862 kcal (2) G-P(sol) polarization free energy of solvation -92.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds