Wall clock time and date at job start Wed Apr 1 2020 05:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38183 * 126.45529 * 338.30947 * 3 2 1 5 5 N 1.34421 * 108.38005 * 180.15269 * 4 3 2 6 6 H 0.97008 * 125.40292 * 179.87644 * 5 4 3 7 7 C 1.37743 * 109.19539 * 359.60827 * 5 4 3 8 8 C 1.46792 * 125.85501 * 180.26600 * 7 5 4 9 9 O 1.21681 * 119.99978 * 179.97438 * 8 7 5 10 10 N 1.34777 * 119.99612 * 359.97130 * 8 7 5 11 11 C 1.46500 * 119.99817 * 175.00067 * 10 8 7 12 12 C 1.53002 * 115.54703 * 279.61947 * 11 10 8 13 13 N 1.46491 * 109.47315 * 324.95975 * 12 11 10 14 14 C 1.34784 * 120.00316 * 174.90457 * 13 12 11 15 15 O 1.21281 * 119.99331 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00290 * 180.02562 * 14 13 12 17 17 S 1.80994 * 109.47197 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00333 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99561 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00241 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99953 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99782 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47309 * 89.99851 * 22 20 18 24 24 H 1.48499 * 109.46936 * 209.99563 * 22 20 18 25 25 H 1.48494 * 109.47365 * 329.99428 * 22 20 18 26 26 C 1.52997 * 117.49998 * 133.91313 * 11 10 8 27 27 C 1.53002 * 117.49980 * 65.28839 * 11 10 8 28 28 C 1.36416 * 108.29645 * 0.24290 * 7 5 4 29 29 H 1.08003 * 125.80530 * 0.04598 * 4 3 2 30 30 H 0.96995 * 120.00338 * 355.00224 * 10 8 7 31 31 H 1.09002 * 109.46985 * 84.96396 * 12 11 10 32 32 H 1.09004 * 109.46929 * 204.95837 * 12 11 10 33 33 H 0.97003 * 120.00132 * 354.91001 * 13 12 11 34 34 H 1.08999 * 109.46902 * 300.00507 * 16 14 13 35 35 H 1.08998 * 109.46893 * 60.00101 * 16 14 13 36 36 H 0.97005 * 120.00083 * 180.02562 * 21 20 18 37 37 H 1.08990 * 117.49938 * 359.97438 * 26 11 10 38 38 H 1.08996 * 117.49821 * 145.02679 * 26 11 10 39 39 H 1.09009 * 117.49856 * 214.98299 * 27 11 10 40 40 H 1.09000 * 117.49721 * 359.97341 * 27 11 10 41 41 H 1.08002 * 126.47830 * 179.97438 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3896 -1.0317 0.4108 5 7 4.6673 -0.6424 0.2598 6 1 5.4471 -1.1776 0.4755 7 6 4.6936 0.6348 -0.2554 8 6 5.8996 1.4108 -0.5687 9 8 5.7987 2.5352 -1.0227 10 7 7.1187 0.8779 -0.3533 11 6 8.3203 1.6068 -0.7669 12 6 8.6793 1.4996 -2.2503 13 7 8.3341 0.1631 -2.7409 14 6 8.4669 -0.1294 -4.0499 15 8 8.8725 0.7138 -4.8215 16 6 8.1113 -1.5041 -4.5546 17 16 8.3962 -1.5835 -6.3402 18 6 7.9128 -3.2487 -6.6535 19 1 7.5702 -3.8733 -5.8418 20 6 7.9731 -3.7579 -7.9433 21 7 8.3911 -2.9968 -8.9325 22 14 7.4599 -5.5231 -8.2754 23 1 6.0098 -5.5657 -8.5928 24 1 8.2341 -6.0556 -9.4253 25 1 7.7278 -6.3512 -7.0723 26 6 9.4733 1.6943 0.2350 27 6 8.6216 2.9304 -0.0610 28 6 3.4069 1.0548 -0.4251 29 1 3.0609 -1.9880 0.7903 30 1 7.2005 0.0116 0.0754 31 1 8.1228 2.2485 -2.8138 32 1 9.7484 1.6688 -2.3785 33 1 8.0100 -0.5114 -2.1237 34 1 8.7328 -2.2468 -4.0544 35 1 7.0614 -1.7079 -4.3444 36 1 8.4329 -3.3526 -9.8339 37 1 9.3377 1.2099 1.2019 38 1 10.4880 1.6755 -0.1626 39 1 9.0759 3.7247 -0.6533 40 1 7.9255 3.2590 0.7108 41 1 3.0896 2.0124 -0.8109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285908199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:07 Heat of formation + Delta-G solvation = 33.697570 kcal Electronic energy + Delta-G solvation = -26555.860237 eV Core-core repulsion = 22564.135464 eV Total energy + Delta-G solvation = -3991.724773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.10050 -40.29182 -38.98750 -37.61792 -36.66998 -34.03506 -33.62113 -32.45752 -31.92215 -30.09064 -29.80223 -26.51096 -25.45082 -24.18515 -23.33808 -22.98072 -20.98741 -20.45895 -20.33106 -19.64707 -18.00860 -17.21066 -16.86800 -16.41912 -16.39600 -15.85762 -15.48386 -15.22997 -14.88398 -14.82842 -14.64008 -14.26493 -14.15683 -13.92552 -13.72632 -13.44992 -13.35825 -13.25611 -13.09902 -12.76982 -12.58810 -12.31693 -12.00052 -11.85136 -11.40302 -11.09187 -11.05655 -10.80220 -10.74476 -10.36613 -9.86662 -9.72131 -9.63796 -9.44417 -9.09944 -8.94032 -8.91253 -8.26790 -6.53088 -6.24327 -3.95256 0.87771 1.33656 2.23952 2.37032 2.52626 2.83918 2.95349 3.04405 3.19038 3.19974 3.26553 3.30357 3.32531 3.65611 3.77568 4.15654 4.17439 4.28167 4.37242 4.39869 4.51793 4.69348 5.00937 5.08984 5.10857 5.14968 5.18278 5.39299 5.41311 5.50540 5.58103 5.66227 5.75234 5.82703 5.86004 5.97196 6.06083 6.08303 6.52103 6.55335 6.91822 7.34080 7.55964 7.61739 7.69753 8.31814 8.55367 9.20805 10.83087 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007863 B = 0.002846 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.179401 B = 9837.254885 C =12622.597646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.289 3.711 3 C -0.132 4.132 4 C 0.100 3.900 5 N -0.523 5.523 6 H 0.425 0.575 7 C -0.050 4.050 8 C 0.594 3.406 9 O -0.504 6.504 10 N -0.703 5.703 11 C 0.084 3.916 12 C 0.153 3.847 13 N -0.733 5.733 14 C 0.531 3.469 15 O -0.514 6.514 16 C -0.152 4.152 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.168 4.168 27 C -0.148 4.148 28 C -0.052 4.052 29 H 0.190 0.810 30 H 0.396 0.604 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.392 0.608 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.269 0.731 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 4.742 27.095 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.027 4.027 3 C -0.143 4.143 4 C -0.044 4.044 5 N -0.118 5.118 6 H 0.264 0.736 7 C -0.161 4.161 8 C 0.381 3.619 9 O -0.377 6.377 10 N -0.355 5.355 11 C -0.003 4.003 12 C 0.028 3.972 13 N -0.388 5.388 14 C 0.317 3.683 15 O -0.388 6.388 16 C -0.303 4.303 17 S 0.169 5.831 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.205 4.205 27 C -0.187 4.187 28 C -0.079 4.079 29 H 0.207 0.793 30 H 0.230 0.770 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.466 6.994 25.248 26.315 hybrid contribution -0.197 -3.266 1.296 3.519 sum -2.663 3.728 26.544 26.937 Atomic orbital electron populations 1.81296 1.11804 1.07548 1.10155 1.24611 0.91411 0.93694 0.92951 1.15387 0.85167 0.97576 1.16139 1.22308 0.82204 0.99312 1.00607 1.41734 1.08291 1.13398 1.48392 0.73610 1.20017 0.95393 0.87066 1.13665 1.16987 0.81315 0.85713 0.77866 1.90907 1.85802 1.17654 1.43381 1.45110 1.04474 1.22723 1.63170 1.20837 0.86909 1.00022 0.92568 1.21021 1.00770 0.85885 0.89559 1.45807 1.70143 1.13791 1.09058 1.20309 0.76985 0.89802 0.81164 1.90718 1.43862 1.49165 1.55028 1.23509 1.04284 0.95482 1.06995 1.85451 1.86412 1.17280 0.93995 1.22846 1.51343 0.97551 0.96721 0.90998 1.24990 0.94775 0.98738 0.95060 1.70014 1.43589 1.36145 1.00432 0.86172 0.78687 0.82602 0.78054 1.20240 1.20729 1.19734 1.23503 0.95795 1.01838 0.99404 1.23245 1.01808 0.91236 1.02364 1.21100 0.89252 0.99111 0.98404 0.79321 0.76957 0.90171 0.90438 0.77418 0.89346 0.89427 0.92135 0.88132 0.87135 0.87343 0.87952 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.31 18.54 41.84 0.78 -4.53 16 2 C 0.29 2.77 15.83 -22.47 -0.36 2.42 16 3 C -0.13 -0.93 5.97 -106.84 -0.64 -1.57 16 4 C 0.10 0.36 11.90 -16.44 -0.20 0.16 16 5 N -0.52 -1.57 5.92 -9.27 -0.05 -1.63 16 6 H 0.43 -0.22 8.15 -40.82 -0.33 -0.55 16 7 C -0.05 -0.35 6.99 -82.41 -0.58 -0.92 16 8 C 0.59 5.25 7.72 -12.80 -0.10 5.15 16 9 O -0.50 -6.58 16.43 5.21 0.09 -6.50 16 10 N -0.70 -4.14 4.39 -48.86 -0.21 -4.36 16 11 C 0.08 0.62 2.01 -131.82 -0.27 0.36 16 12 C 0.15 1.69 5.90 -4.05 -0.02 1.67 16 13 N -0.73 -8.97 5.40 -60.30 -0.33 -9.30 16 14 C 0.53 9.57 7.85 -10.98 -0.09 9.48 16 15 O -0.51 -11.53 15.86 5.56 0.09 -11.45 16 16 C -0.15 -2.94 6.16 36.00 0.22 -2.72 16 17 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 18 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 19 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 22 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 26 C -0.17 -0.83 10.10 -26.73 -0.27 -1.10 16 27 C -0.15 -1.01 9.56 -26.73 -0.26 -1.27 16 28 C -0.05 -0.42 10.54 -39.09 -0.41 -0.83 16 29 H 0.19 0.04 8.06 -52.48 -0.42 -0.39 16 30 H 0.40 0.91 7.92 -40.82 -0.32 0.59 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 33 H 0.39 3.49 7.76 -40.82 -0.32 3.18 16 34 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 35 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 37 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.11 0.52 8.05 -51.93 -0.42 0.10 16 39 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -40.00 387.57 -7.79 -47.79 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.73 Total: -1.04 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.76 Total: -1.92 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.91 Total: -45.02 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.94 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.00 -7.79 -47.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285908199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.488 kcal (2) G-P(sol) polarization free energy of solvation -40.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds