Wall clock time and date at job start Wed Apr 1 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38183 * 126.45529 * 338.30947 * 3 2 1 5 5 N 1.34421 * 108.38005 * 180.15269 * 4 3 2 6 6 H 0.97008 * 125.40292 * 179.87644 * 5 4 3 7 7 C 1.37743 * 109.19539 * 359.60827 * 5 4 3 8 8 C 1.46792 * 125.85501 * 180.26600 * 7 5 4 9 9 O 1.21681 * 119.99978 * 179.97438 * 8 7 5 10 10 N 1.34777 * 119.99612 * 359.97130 * 8 7 5 11 11 C 1.46500 * 119.99817 * 175.00067 * 10 8 7 12 12 C 1.53002 * 115.54703 * 279.61947 * 11 10 8 13 13 N 1.46491 * 109.47315 * 324.95975 * 12 11 10 14 14 C 1.34784 * 120.00316 * 174.90457 * 13 12 11 15 15 O 1.21281 * 119.99331 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00290 * 180.02562 * 14 13 12 17 17 S 1.80994 * 109.47197 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00333 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99561 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00241 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99953 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99782 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47309 * 89.99851 * 22 20 18 24 24 H 1.48499 * 109.46936 * 209.99563 * 22 20 18 25 25 H 1.48494 * 109.47365 * 329.99428 * 22 20 18 26 26 C 1.52997 * 117.49998 * 133.91313 * 11 10 8 27 27 C 1.53002 * 117.49980 * 65.28839 * 11 10 8 28 28 C 1.36416 * 108.29645 * 0.24290 * 7 5 4 29 29 H 1.08003 * 125.80530 * 0.04598 * 4 3 2 30 30 H 0.96995 * 120.00338 * 355.00224 * 10 8 7 31 31 H 1.09002 * 109.46985 * 84.96396 * 12 11 10 32 32 H 1.09004 * 109.46929 * 204.95837 * 12 11 10 33 33 H 0.97003 * 120.00132 * 354.91001 * 13 12 11 34 34 H 1.08999 * 109.46902 * 300.00507 * 16 14 13 35 35 H 1.08998 * 109.46893 * 60.00101 * 16 14 13 36 36 H 0.97005 * 120.00083 * 180.02562 * 21 20 18 37 37 H 1.08990 * 117.49938 * 359.97438 * 26 11 10 38 38 H 1.08996 * 117.49821 * 145.02679 * 26 11 10 39 39 H 1.09009 * 117.49856 * 214.98299 * 27 11 10 40 40 H 1.09000 * 117.49721 * 359.97341 * 27 11 10 41 41 H 1.08002 * 126.47830 * 179.97438 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3896 -1.0317 0.4108 5 7 4.6673 -0.6424 0.2598 6 1 5.4471 -1.1776 0.4755 7 6 4.6936 0.6348 -0.2554 8 6 5.8996 1.4108 -0.5687 9 8 5.7987 2.5352 -1.0227 10 7 7.1187 0.8779 -0.3533 11 6 8.3203 1.6068 -0.7669 12 6 8.6793 1.4996 -2.2503 13 7 8.3341 0.1631 -2.7409 14 6 8.4669 -0.1294 -4.0499 15 8 8.8725 0.7138 -4.8215 16 6 8.1113 -1.5041 -4.5546 17 16 8.3962 -1.5835 -6.3402 18 6 7.9128 -3.2487 -6.6535 19 1 7.5702 -3.8733 -5.8418 20 6 7.9731 -3.7579 -7.9433 21 7 8.3911 -2.9968 -8.9325 22 14 7.4599 -5.5231 -8.2754 23 1 6.0098 -5.5657 -8.5928 24 1 8.2341 -6.0556 -9.4253 25 1 7.7278 -6.3512 -7.0723 26 6 9.4733 1.6943 0.2350 27 6 8.6216 2.9304 -0.0610 28 6 3.4069 1.0548 -0.4251 29 1 3.0609 -1.9880 0.7903 30 1 7.2005 0.0116 0.0754 31 1 8.1228 2.2485 -2.8138 32 1 9.7484 1.6688 -2.3785 33 1 8.0100 -0.5114 -2.1237 34 1 8.7328 -2.2468 -4.0544 35 1 7.0614 -1.7079 -4.3444 36 1 8.4329 -3.3526 -9.8339 37 1 9.3377 1.2099 1.2019 38 1 10.4880 1.6755 -0.1626 39 1 9.0759 3.7247 -0.6533 40 1 7.9255 3.2590 0.7108 41 1 3.0896 2.0124 -0.8109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285908199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:06 Heat of formation + Delta-G solvation = 2.580228 kcal Electronic energy + Delta-G solvation = -26557.209586 eV Core-core repulsion = 22564.135464 eV Total energy + Delta-G solvation = -3993.074122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.58721 -41.09065 -40.21102 -38.37601 -37.45276 -35.26375 -34.57068 -34.24669 -32.42676 -31.29374 -30.56601 -27.87012 -27.28781 -24.83439 -23.82512 -23.45713 -21.82587 -21.50273 -21.00906 -20.20611 -19.83800 -18.18088 -17.76268 -17.42319 -16.99128 -16.86958 -16.72049 -16.44664 -16.35419 -15.78121 -15.51917 -15.33383 -14.86537 -14.75639 -14.65301 -14.57513 -14.36990 -14.34498 -14.06099 -13.83447 -13.51795 -13.39641 -13.15438 -12.95652 -12.88364 -12.60234 -12.38779 -11.99332 -11.72149 -11.47700 -11.13385 -11.07470 -10.95678 -10.35192 -10.25464 -10.15731 -10.11055 -9.39865 -8.66018 -8.33394 -6.11661 0.38586 0.75287 1.27000 1.43740 1.47799 1.57008 1.60566 1.65382 1.85048 1.99711 2.20530 2.24777 2.29047 2.65771 2.70864 3.01175 3.16905 3.33071 3.51812 3.77232 3.85694 3.90042 4.04856 4.17841 4.20283 4.29633 4.45573 4.49375 4.58854 4.63639 4.72808 4.79650 4.90557 5.03199 5.22506 5.26941 5.32743 5.42931 5.45644 5.54831 6.20885 6.29825 6.46587 6.48849 6.63950 7.07982 7.10800 7.23124 8.75827 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007863 B = 0.002846 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.179401 B = 9837.254885 C =12622.597646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.312 3.688 3 C -0.165 4.165 4 C 0.146 3.854 5 N -0.499 5.499 6 H 0.447 0.553 7 C -0.059 4.059 8 C 0.592 3.408 9 O -0.557 6.557 10 N -0.683 5.683 11 C 0.070 3.930 12 C 0.154 3.846 13 N -0.703 5.703 14 C 0.531 3.469 15 O -0.567 6.567 16 C -0.125 4.125 17 S -0.157 6.157 18 C -0.543 4.543 19 H 0.086 0.914 20 C 0.012 3.988 21 N -0.913 5.913 22 Si 0.999 3.001 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.254 1.254 26 C -0.130 4.130 27 C -0.160 4.160 28 C -0.069 4.069 29 H 0.236 0.764 30 H 0.418 0.582 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.413 0.587 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.270 0.730 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 1.312 30.502 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.001 4.001 3 C -0.175 4.175 4 C -0.001 4.001 5 N -0.096 5.096 6 H 0.290 0.710 7 C -0.171 4.171 8 C 0.381 3.619 9 O -0.434 6.434 10 N -0.337 5.337 11 C -0.018 4.018 12 C 0.029 3.971 13 N -0.357 5.357 14 C 0.317 3.683 15 O -0.445 6.445 16 C -0.277 4.277 17 S 0.070 5.930 18 C -0.691 4.691 19 H 0.104 0.896 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.820 3.180 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.177 1.177 26 C -0.168 4.168 27 C -0.198 4.198 28 C -0.097 4.097 29 H 0.252 0.748 30 H 0.256 0.744 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.250 0.750 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.725 3.509 28.753 29.018 hybrid contribution -0.370 -2.111 0.358 2.173 sum -2.095 1.398 29.112 29.220 Atomic orbital electron populations 1.81307 1.13461 1.09446 1.12604 1.24953 0.91801 0.92075 0.91290 1.15452 0.84050 0.98967 1.19044 1.22935 0.81314 0.99274 0.96532 1.41671 1.09182 1.11952 1.46748 0.70995 1.19590 0.93973 0.88588 1.14922 1.17265 0.82420 0.85204 0.77048 1.90890 1.86602 1.20042 1.45876 1.44897 1.03163 1.23341 1.62250 1.20619 0.88715 1.01554 0.90902 1.21039 1.00538 0.83860 0.91709 1.45462 1.68082 1.14841 1.07308 1.20145 0.76766 0.88799 0.82571 1.90709 1.46627 1.50360 1.56840 1.23329 1.06047 0.97206 1.01075 1.85701 1.87094 1.18449 1.01731 1.23195 1.51001 0.97424 0.97441 0.89594 1.26145 0.94541 1.03850 0.94758 1.70192 1.45163 1.38617 1.00976 0.84951 0.78248 0.76353 0.78415 1.19551 1.20542 1.17725 1.23614 0.94879 0.99053 0.99222 1.23267 1.02726 0.91569 1.02265 1.21096 0.90452 0.99111 0.99053 0.74788 0.74389 0.93783 0.89944 0.74955 0.86589 0.87397 0.92075 0.85375 0.86293 0.88018 0.88233 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.32 18.54 19.00 0.35 -11.97 16 2 C 0.31 5.91 15.83 88.33 1.40 7.31 16 3 C -0.17 -2.06 5.97 -21.30 -0.13 -2.19 16 4 C 0.15 0.41 11.90 84.28 1.00 1.41 16 5 N -0.50 -0.83 5.92 -183.25 -1.08 -1.91 16 6 H 0.45 -3.04 8.15 -92.70 -0.76 -3.79 16 7 C -0.06 -0.71 6.99 40.03 0.28 -0.43 16 8 C 0.59 9.76 7.72 86.48 0.67 10.43 16 9 O -0.56 -15.02 16.43 -4.29 -0.07 -15.09 16 10 N -0.68 -6.12 4.39 -426.73 -1.87 -7.99 16 11 C 0.07 0.89 2.01 3.60 0.01 0.90 16 12 C 0.15 3.28 5.90 86.38 0.51 3.79 16 13 N -0.70 -15.83 5.40 -463.06 -2.50 -18.33 16 14 C 0.53 18.77 7.85 87.65 0.69 19.45 16 15 O -0.57 -26.20 15.86 -3.03 -0.05 -26.24 16 16 C -0.13 -4.66 6.16 71.23 0.44 -4.22 16 17 S -0.16 -8.56 20.57 -56.49 -1.16 -9.72 16 18 C -0.54 -30.14 9.50 67.95 0.65 -29.50 16 19 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.65 5.49 84.86 0.47 1.12 16 21 N -0.91 -55.74 13.22 21.65 0.29 -55.46 16 22 Si 1.00 42.56 29.55 68.60 2.03 44.59 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 26 C -0.13 -0.81 10.10 30.59 0.31 -0.50 16 27 C -0.16 -1.97 9.56 30.60 0.29 -1.67 16 28 C -0.07 -1.10 10.54 22.59 0.24 -0.87 16 29 H 0.24 -1.43 8.06 -2.91 -0.02 -1.46 16 30 H 0.42 -0.05 7.92 -92.71 -0.73 -0.79 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.71 7.91 -2.38 -0.02 1.69 16 33 H 0.41 5.79 7.76 -92.71 -0.72 5.07 16 34 H 0.12 3.69 8.14 -2.40 -0.02 3.67 16 35 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 36 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 37 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.12 0.64 8.05 -2.39 -0.02 0.62 16 39 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -95.23 387.57 1.66 -93.57 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -1.08 Total: 3.52 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 6.82 Total: 5.03 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -4.82 Total: -95.66 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.12 Total: -41.34 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -95.23 1.66 -93.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285908199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.148 kcal (2) G-P(sol) polarization free energy of solvation -95.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds