Wall clock time and date at job start Wed Apr 1 2020 04:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99737 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99751 * 3 2 1 6 6 H 1.48500 * 109.46738 * 149.99993 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47181 * 135.99748 * 359.62326 * 13 11 10 15 15 C 1.53187 * 87.73041 * 153.42750 * 14 13 11 16 16 C 1.47168 * 135.98876 * 179.97438 * 13 11 10 17 17 C 1.52514 * 114.08661 * 139.66770 * 15 14 13 18 18 C 1.53202 * 109.35774 * 190.14832 * 17 15 14 19 19 C 1.53146 * 109.35161 * 301.09924 * 18 17 15 20 20 N 1.46896 * 109.10900 * 56.51684 * 19 18 17 21 21 C 1.34776 * 120.70094 * 124.57698 * 20 19 18 22 22 O 1.21277 * 120.00133 * 180.02562 * 21 20 19 23 23 C 1.50700 * 119.99930 * 0.02562 * 21 20 19 24 24 F 1.39895 * 109.47292 * 54.99960 * 23 21 20 25 25 F 1.39896 * 109.47207 * 175.00465 * 23 21 20 26 26 C 1.47142 * 118.59940 * 304.59392 * 20 19 18 27 27 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 29 29 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 30 30 H 1.09000 * 113.49203 * 268.12005 * 14 13 11 31 31 H 1.08998 * 113.48481 * 38.63145 * 14 13 11 32 32 H 1.08989 * 113.49549 * 321.36430 * 16 13 11 33 33 H 1.09002 * 113.49189 * 91.88450 * 16 13 11 34 34 H 1.09000 * 109.48512 * 310.11157 * 17 15 14 35 35 H 1.08997 * 109.49320 * 70.18226 * 17 15 14 36 36 H 1.08999 * 109.49033 * 181.13781 * 18 17 15 37 37 H 1.09004 * 109.51236 * 61.07474 * 18 17 15 38 38 H 1.09003 * 109.53148 * 296.62350 * 19 18 17 39 39 H 1.08999 * 109.52947 * 176.40717 * 19 18 17 40 40 H 1.09003 * 109.46942 * 295.00293 * 23 21 20 41 41 H 1.08997 * 109.64144 * 291.54466 * 26 20 19 42 42 H 1.09004 * 109.80681 * 171.02674 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 4.3062 -6.5105 -0.0054 15 6 4.0934 -7.8610 0.6856 16 6 2.7275 -7.8103 0.0004 17 6 5.0070 -8.9712 0.1771 18 6 4.5401 -10.3143 0.7474 19 6 4.5702 -10.2540 2.2774 20 7 3.7398 -9.1304 2.7308 21 6 2.7339 -9.3273 3.6059 22 8 2.0559 -8.3906 3.9715 23 6 2.4516 -10.7117 4.1303 24 9 3.6150 -11.2414 4.6984 25 9 1.4463 -10.6467 5.1010 26 6 4.0291 -7.7853 2.2092 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7315 -0.8895 29 1 3.1244 -3.7315 0.8905 30 1 4.7298 -6.5965 -1.0060 31 1 4.8292 -5.7815 0.6135 32 1 1.9146 -8.1816 0.6242 33 1 2.7262 -8.2461 -0.9987 34 1 4.9672 -9.0048 -0.9116 35 1 6.0302 -8.7759 0.4981 36 1 5.2037 -11.1067 0.4015 37 1 3.5235 -10.5188 0.4115 38 1 5.5961 -10.1091 2.6162 39 1 4.1783 -11.1852 2.6865 40 1 2.1241 -11.3510 3.3103 41 1 4.9861 -7.4389 2.5995 42 1 3.2401 -7.0954 2.5087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001286345431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:54 Heat of formation + Delta-G solvation = -122.712759 kcal Electronic energy + Delta-G solvation = -28680.359481 eV Core-core repulsion = 24231.163061 eV Total energy + Delta-G solvation = -4449.196420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.64088 -47.64563 -41.50298 -39.75186 -38.07466 -36.60146 -33.17627 -32.42185 -31.40748 -29.73020 -28.64217 -26.39576 -26.06085 -25.68436 -25.36364 -22.86288 -20.96426 -19.56435 -18.83333 -18.68092 -18.16544 -17.70464 -17.64238 -16.62340 -16.51995 -15.97354 -15.53154 -15.33044 -15.14665 -14.90441 -14.79728 -14.42628 -14.19644 -14.14401 -14.00216 -13.83454 -13.66024 -13.42106 -13.06795 -12.91443 -12.78983 -12.54481 -12.48607 -12.19826 -11.82851 -11.69321 -11.53038 -11.10620 -11.05691 -11.01121 -10.75390 -10.66470 -10.28957 -9.81656 -9.39218 -9.28766 -9.06002 -8.63311 -8.22888 -6.49634 -6.20688 -3.91575 1.73954 2.00314 2.74010 3.05558 3.17884 3.22796 3.24723 3.30571 3.45090 3.55681 3.74834 4.06056 4.15250 4.20493 4.20707 4.23570 4.35478 4.48235 4.57551 4.83419 4.85978 5.02154 5.14252 5.15669 5.20911 5.21524 5.27644 5.32319 5.44504 5.45893 5.47244 5.57149 5.67536 5.79511 5.81288 5.90694 6.00524 6.13475 6.62762 7.36060 7.60038 7.83538 8.35831 8.54195 9.24263 10.86775 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.002415 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.579705 B =11589.902539 C =12358.744700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.144 4.144 11 C 0.562 3.438 12 O -0.511 6.511 13 N -0.652 5.652 14 C 0.116 3.884 15 C -0.117 4.117 16 C 0.119 3.881 17 C -0.101 4.101 18 C -0.136 4.136 19 C 0.098 3.902 20 N -0.597 5.597 21 C 0.471 3.529 22 O -0.489 6.489 23 C 0.259 3.741 24 F -0.188 7.188 25 F -0.173 7.173 26 C 0.139 3.861 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.709 -27.357 2.058 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.294 4.294 11 C 0.352 3.648 12 O -0.384 6.384 13 N -0.391 5.391 14 C -0.008 4.008 15 C -0.118 4.118 16 C -0.005 4.005 17 C -0.139 4.139 18 C -0.174 4.174 19 C -0.025 4.025 20 N -0.331 5.331 21 C 0.253 3.747 22 O -0.361 6.361 23 C 0.202 3.798 24 F -0.169 7.169 25 F -0.154 7.154 26 C 0.017 3.983 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.100 0.900 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.190 -26.814 2.325 29.973 hybrid contribution 2.047 1.183 -0.024 2.364 sum 15.236 -25.631 2.301 29.906 Atomic orbital electron populations 1.70022 1.05961 1.27469 1.46777 1.25000 0.95036 0.99037 0.94536 0.86156 0.79411 0.81544 0.78316 1.20278 1.20727 1.19683 1.22848 0.94869 0.91575 1.59028 0.90940 1.85447 1.04838 0.96324 1.96707 1.23464 1.06522 0.94648 1.04780 1.19958 0.85310 0.84888 0.74686 1.90727 1.14804 1.84828 1.48047 1.49685 1.07546 1.05889 1.76027 1.22938 0.82901 0.94489 1.00463 1.22252 0.97463 0.96680 0.95421 1.22812 0.96274 0.81479 0.99918 1.21356 0.98801 0.92744 1.00974 1.21955 1.02940 0.98175 0.94340 1.21989 0.96225 0.88826 0.95422 1.48051 1.31487 1.09977 1.43599 1.21065 0.81650 0.90859 0.81107 1.90903 1.46779 1.41822 1.56611 1.21597 0.75468 0.94370 0.88370 1.93033 1.49396 1.87427 1.87035 1.93082 1.59846 1.96990 1.65516 1.21346 1.03352 0.83135 0.90430 0.92162 0.89356 0.89317 0.89198 0.89926 0.90800 0.89943 0.90477 0.90602 0.89792 0.91019 0.89995 0.89490 0.84678 0.89968 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.55 13.22 55.49 0.73 -25.81 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -15.47 9.50 30.94 0.29 -15.17 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.14 -3.02 5.98 36.01 0.22 -2.81 16 11 C 0.56 11.24 8.10 -10.98 -0.09 11.15 16 12 O -0.51 -12.50 16.64 5.56 0.09 -12.40 16 13 N -0.65 -9.27 3.48 -184.93 -0.64 -9.91 16 14 C 0.12 1.04 7.60 -8.02 -0.06 0.97 16 15 C -0.12 -0.86 0.96 -154.88 -0.15 -1.01 16 16 C 0.12 1.27 7.53 -8.18 -0.06 1.21 16 17 C -0.10 -0.39 5.11 -26.88 -0.14 -0.53 16 18 C -0.14 -0.40 6.03 -26.55 -0.16 -0.56 16 19 C 0.10 0.38 5.89 -3.75 -0.02 0.36 16 20 N -0.60 -4.69 2.98 -172.96 -0.52 -5.21 16 21 C 0.47 4.99 7.55 -10.99 -0.08 4.91 16 22 O -0.49 -7.83 16.06 5.56 0.09 -7.74 16 23 C 0.26 1.95 4.62 36.01 0.17 2.12 16 24 F -0.19 -1.35 15.49 2.25 0.03 -1.32 16 25 F -0.17 -1.89 16.95 2.25 0.04 -1.85 16 26 C 0.14 1.25 5.61 -3.86 -0.02 1.23 16 27 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 29 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 30 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.08 0.70 8.12 -51.93 -0.42 0.27 16 32 H 0.07 0.94 8.10 -51.94 -0.42 0.52 16 33 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 34 H 0.08 0.26 8.10 -51.93 -0.42 -0.16 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.07 0.25 8.02 -51.93 -0.42 -0.16 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.09 0.23 5.28 -51.93 -0.27 -0.05 16 40 H 0.14 0.42 7.94 -51.93 -0.41 0.01 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 1.37 6.85 -51.93 -0.36 1.02 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -39.33 369.79 -7.68 -47.01 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -5.64 Total: -4.96 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -0.20 Total: 3.89 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.43 Total: -40.94 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.14 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.07 Total: -3.16 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.33 -7.68 -47.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286345431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.702 kcal (2) G-P(sol) polarization free energy of solvation -39.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds