Wall clock time and date at job start Wed Apr 1 2020 04:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99737 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99751 * 3 2 1 6 6 H 1.48500 * 109.46738 * 149.99993 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47181 * 135.99748 * 359.62326 * 13 11 10 15 15 C 1.53187 * 87.73041 * 153.42750 * 14 13 11 16 16 C 1.47168 * 135.98876 * 179.97438 * 13 11 10 17 17 C 1.52514 * 114.08661 * 139.66770 * 15 14 13 18 18 C 1.53202 * 109.35774 * 190.14832 * 17 15 14 19 19 C 1.53146 * 109.35161 * 301.09924 * 18 17 15 20 20 N 1.46896 * 109.10900 * 56.51684 * 19 18 17 21 21 C 1.34776 * 120.70094 * 124.57698 * 20 19 18 22 22 O 1.21277 * 120.00133 * 180.02562 * 21 20 19 23 23 C 1.50700 * 119.99930 * 0.02562 * 21 20 19 24 24 F 1.39895 * 109.47292 * 54.99960 * 23 21 20 25 25 F 1.39896 * 109.47207 * 175.00465 * 23 21 20 26 26 C 1.47142 * 118.59940 * 304.59392 * 20 19 18 27 27 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 29 29 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 30 30 H 1.09000 * 113.49203 * 268.12005 * 14 13 11 31 31 H 1.08998 * 113.48481 * 38.63145 * 14 13 11 32 32 H 1.08989 * 113.49549 * 321.36430 * 16 13 11 33 33 H 1.09002 * 113.49189 * 91.88450 * 16 13 11 34 34 H 1.09000 * 109.48512 * 310.11157 * 17 15 14 35 35 H 1.08997 * 109.49320 * 70.18226 * 17 15 14 36 36 H 1.08999 * 109.49033 * 181.13781 * 18 17 15 37 37 H 1.09004 * 109.51236 * 61.07474 * 18 17 15 38 38 H 1.09003 * 109.53148 * 296.62350 * 19 18 17 39 39 H 1.08999 * 109.52947 * 176.40717 * 19 18 17 40 40 H 1.09003 * 109.46942 * 295.00293 * 23 21 20 41 41 H 1.08997 * 109.64144 * 291.54466 * 26 20 19 42 42 H 1.09004 * 109.80681 * 171.02674 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 4.3062 -6.5105 -0.0054 15 6 4.0934 -7.8610 0.6856 16 6 2.7275 -7.8103 0.0004 17 6 5.0070 -8.9712 0.1771 18 6 4.5401 -10.3143 0.7474 19 6 4.5702 -10.2540 2.2774 20 7 3.7398 -9.1304 2.7308 21 6 2.7339 -9.3273 3.6059 22 8 2.0559 -8.3906 3.9715 23 6 2.4516 -10.7117 4.1303 24 9 3.6150 -11.2414 4.6984 25 9 1.4463 -10.6467 5.1010 26 6 4.0291 -7.7853 2.2092 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7315 -0.8895 29 1 3.1244 -3.7315 0.8905 30 1 4.7298 -6.5965 -1.0060 31 1 4.8292 -5.7815 0.6135 32 1 1.9146 -8.1816 0.6242 33 1 2.7262 -8.2461 -0.9987 34 1 4.9672 -9.0048 -0.9116 35 1 6.0302 -8.7759 0.4981 36 1 5.2037 -11.1067 0.4015 37 1 3.5235 -10.5188 0.4115 38 1 5.5961 -10.1091 2.6162 39 1 4.1783 -11.1852 2.6865 40 1 2.1241 -11.3510 3.3103 41 1 4.9861 -7.4389 2.5995 42 1 3.2401 -7.0954 2.5087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001286345431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:53 Heat of formation + Delta-G solvation = -151.668772 kcal Electronic energy + Delta-G solvation = -28681.615108 eV Core-core repulsion = 24231.163061 eV Total energy + Delta-G solvation = -4450.452047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.29628 -48.32664 -42.32666 -40.72195 -39.39344 -37.45412 -34.62156 -33.81628 -32.35994 -30.99559 -29.48418 -27.78600 -27.16714 -26.89282 -26.25183 -23.36657 -21.73508 -20.74740 -19.74117 -19.48737 -19.27393 -18.80436 -18.35941 -18.01330 -17.35830 -16.94835 -16.88576 -16.85593 -16.20669 -15.91012 -15.80699 -15.61693 -15.21338 -15.06176 -14.80991 -14.61624 -14.54068 -14.43837 -14.16331 -13.83423 -13.79743 -13.58614 -13.36994 -13.21014 -13.12441 -12.97897 -12.90182 -12.62739 -12.13158 -11.94509 -11.78183 -11.69298 -11.37270 -11.17150 -11.05449 -10.85537 -10.33458 -9.98979 -9.76459 -8.73352 -8.37602 -6.17690 0.95267 1.17543 1.33978 1.40557 1.41168 1.51426 1.54121 1.95260 2.24260 2.60782 2.89314 2.96430 3.04962 3.20031 3.43829 3.51528 3.60928 3.63875 3.85040 3.92559 4.06852 4.12951 4.19697 4.37572 4.42428 4.45902 4.50273 4.52632 4.60282 4.67978 4.74406 4.83674 4.90694 5.01658 5.11028 5.30281 5.33050 5.37785 5.46794 5.97304 6.16429 6.57322 6.63013 7.02788 7.05566 8.72001 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.002415 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.579705 B =11589.902539 C =12358.744700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.003 2.997 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.157 6.157 10 C -0.115 4.115 11 C 0.556 3.444 12 O -0.574 6.574 13 N -0.655 5.655 14 C 0.112 3.888 15 C -0.089 4.089 16 C 0.112 3.888 17 C -0.094 4.094 18 C -0.132 4.132 19 C 0.088 3.912 20 N -0.586 5.586 21 C 0.458 3.542 22 O -0.562 6.562 23 C 0.265 3.735 24 F -0.182 7.182 25 F -0.196 7.196 26 C 0.133 3.867 27 H 0.272 0.728 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.190 0.810 41 H 0.104 0.896 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.333 -29.455 0.767 35.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.824 3.176 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.070 5.930 10 C -0.266 4.266 11 C 0.345 3.655 12 O -0.453 6.453 13 N -0.391 5.391 14 C -0.010 4.010 15 C -0.091 4.091 16 C -0.011 4.011 17 C -0.132 4.132 18 C -0.170 4.170 19 C -0.032 4.032 20 N -0.318 5.318 21 C 0.243 3.757 22 O -0.440 6.440 23 C 0.208 3.792 24 F -0.163 7.163 25 F -0.177 7.177 26 C 0.011 3.989 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.144 0.856 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.206 0.794 41 H 0.122 0.878 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.933 -29.005 1.007 34.116 hybrid contribution 0.735 1.653 0.385 1.850 sum 18.668 -27.352 1.392 33.145 Atomic orbital electron populations 1.70201 1.08112 1.28701 1.47880 1.26208 0.96016 1.03517 0.93601 0.84891 0.78135 0.75614 0.78936 1.18991 1.20315 1.18064 1.23176 0.95310 0.91661 1.59121 0.89784 1.85677 1.10743 0.99562 1.97048 1.23233 1.03322 0.93714 1.06303 1.19710 0.85105 0.85728 0.74955 1.90689 1.17411 1.85717 1.51486 1.49696 1.09911 1.06371 1.73122 1.23432 0.79345 0.95356 1.02847 1.22097 0.95756 0.97537 0.93681 1.23189 0.97537 0.78903 1.01432 1.21428 0.98630 0.91173 1.01990 1.21990 1.03479 0.98535 0.92998 1.22415 0.96419 0.87782 0.96597 1.48227 1.30690 1.10750 1.42180 1.21774 0.81362 0.91518 0.81069 1.90873 1.49508 1.44250 1.59384 1.21895 0.75069 0.93245 0.88943 1.93041 1.49137 1.87012 1.87137 1.93033 1.60972 1.97015 1.66709 1.21309 1.02403 0.83197 0.91976 0.91937 0.87173 0.87985 0.85633 0.89143 0.93783 0.87144 0.88728 0.88255 0.86587 0.91612 0.88107 0.87796 0.79393 0.87774 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.70 13.22 21.65 0.29 -57.41 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 44.44 29.55 68.60 2.03 46.47 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.54 -32.10 9.50 67.96 0.65 -31.45 16 8 H 0.08 4.57 7.80 -2.91 -0.02 4.54 16 9 S -0.16 -9.25 20.57 -56.49 -1.16 -10.42 16 10 C -0.11 -4.93 5.98 71.24 0.43 -4.51 16 11 C 0.56 23.15 8.10 87.66 0.71 23.86 16 12 O -0.57 -30.15 16.64 -3.04 -0.05 -30.20 16 13 N -0.65 -18.41 3.48 -857.40 -2.99 -21.40 16 14 C 0.11 1.66 7.60 83.43 0.63 2.29 16 15 C -0.09 -1.07 0.96 -52.42 -0.05 -1.12 16 16 C 0.11 2.28 7.53 83.34 0.63 2.91 16 17 C -0.09 -0.22 5.11 30.50 0.16 -0.06 16 18 C -0.13 -0.09 6.03 30.71 0.19 0.10 16 19 C 0.09 0.32 5.89 86.35 0.51 0.83 16 20 N -0.59 -8.40 2.98 -819.50 -2.44 -10.84 16 21 C 0.46 9.91 7.55 87.66 0.66 10.57 16 22 O -0.56 -19.71 16.06 -3.02 -0.05 -19.75 16 23 C 0.26 3.67 4.62 71.24 0.33 4.00 16 24 F -0.18 -2.21 15.49 44.97 0.70 -1.51 16 25 F -0.20 -4.35 16.95 44.97 0.76 -3.59 16 26 C 0.13 2.28 5.61 86.15 0.48 2.77 16 27 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 28 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 29 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 30 H 0.13 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.09 1.26 8.12 -2.39 -0.02 1.24 16 32 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 33 H 0.11 1.68 8.06 -2.39 -0.02 1.66 16 34 H 0.09 0.03 8.10 -2.39 -0.02 0.01 16 35 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.07 0.18 8.02 -2.39 -0.02 0.16 16 38 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.10 0.08 5.28 -2.39 -0.01 0.07 16 40 H 0.19 0.60 7.94 -2.39 -0.02 0.58 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.48 6.85 -2.38 -0.02 1.47 16 Total: -1.00 -96.89 369.79 3.91 -92.98 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 1.05 Total: 4.36 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 5.78 Total: 11.31 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -5.14 Total: -89.65 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.10 Total: -49.95 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 1.46 Total: -5.10 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -9.25 SS G_CDS: -1.16 Total: -10.42 kcal Total: -96.89 3.91 -92.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286345431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.690 kcal (2) G-P(sol) polarization free energy of solvation -96.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds