Wall clock time and date at job start Wed Apr 1 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48503 * 109.47446 * 240.00090 * 3 2 1 5 5 H 1.48503 * 109.47238 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46959 * 120.00591 * 3 2 1 7 7 C 1.38800 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99740 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00177 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46938 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00367 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99527 * 179.72580 * 11 10 9 14 14 C 1.47417 * 125.65176 * 359.96806 * 13 11 10 15 15 C 1.55135 * 104.72354 * 155.81762 * 14 13 11 16 16 C 1.55156 * 101.48561 * 37.29566 * 15 14 13 17 17 H 1.09006 * 110.71888 * 82.69621 * 16 15 14 18 18 N 1.46493 * 110.87343 * 205.89685 * 16 15 14 19 19 C 1.34777 * 120.00027 * 200.06288 * 18 16 15 20 20 O 1.21283 * 120.00252 * 355.19142 * 19 18 16 21 21 C 1.50701 * 119.99939 * 175.19287 * 19 18 16 22 22 C 1.53001 * 115.54962 * 304.08480 * 21 19 18 23 23 F 1.39905 * 109.47221 * 305.21351 * 22 21 19 24 24 F 1.39901 * 109.47282 * 65.20646 * 22 21 19 25 25 C 1.53000 * 117.49948 * 158.41691 * 21 19 18 26 26 C 1.52997 * 117.50208 * 89.75528 * 21 19 18 27 27 C 1.47029 * 125.64565 * 180.28056 * 13 11 10 28 28 H 0.97008 * 120.00001 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46890 * 60.00006 * 10 9 7 30 30 H 1.08998 * 109.47284 * 300.00148 * 10 9 7 31 31 H 1.09000 * 110.37098 * 274.74913 * 14 13 11 32 32 H 1.08997 * 110.36550 * 37.07124 * 14 13 11 33 33 H 1.08996 * 111.18975 * 279.19439 * 15 14 13 34 34 H 1.09004 * 110.93827 * 155.28985 * 15 14 13 35 35 H 0.97005 * 120.00304 * 20.07195 * 18 16 15 36 36 H 1.08998 * 109.47620 * 185.20931 * 22 21 19 37 37 H 1.08998 * 117.50010 * 0.02562 * 25 21 19 38 38 H 1.09005 * 117.49517 * 145.01767 * 25 21 19 39 39 H 1.09001 * 117.49997 * 214.98291 * 26 21 19 40 40 H 1.09000 * 117.49901 * 0.02562 * 26 21 19 41 41 H 1.09005 * 109.88037 * 300.44053 * 27 13 11 42 42 H 1.08993 * 109.88685 * 61.44746 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8440 -6.3430 -0.0083 14 6 4.3149 -6.2448 -0.0170 15 6 4.8032 -7.5851 0.5928 16 6 3.7728 -8.5853 0.0054 17 1 4.0566 -8.8831 -1.0040 18 7 3.6337 -9.7595 0.8703 19 6 3.1232 -10.9045 0.3752 20 8 2.6986 -10.9380 -0.7604 21 6 3.0801 -12.1430 1.2326 22 6 4.4234 -12.5919 1.8115 23 9 5.3482 -12.7521 0.7740 24 9 4.8914 -11.6252 2.7079 25 6 2.0763 -13.2324 0.8501 26 6 1.8319 -12.3666 2.0886 27 6 2.4664 -7.7640 -0.0146 28 1 -0.4850 0.8401 0.0004 29 1 3.1250 -3.7317 0.8875 30 1 3.1237 -3.7310 -0.8925 31 1 4.6818 -6.1336 -1.0373 32 1 4.6427 -5.4069 0.5983 33 1 4.7512 -7.5648 1.6814 34 1 5.8127 -7.8213 0.2563 35 1 3.9088 -9.7130 1.7993 36 1 4.2954 -13.5400 2.3338 37 1 1.4473 -13.0536 -0.0219 38 1 2.3727 -14.2690 1.0113 39 1 1.9676 -12.8338 3.0640 40 1 1.0416 -11.6181 2.0313 41 1 1.8709 -7.9932 0.8691 42 1 1.8962 -7.9921 -0.9150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294747747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:12 Heat of formation + Delta-G solvation = -141.753358 kcal Electronic energy + Delta-G solvation = -27917.382997 eV Core-core repulsion = 23467.360914 eV Total energy + Delta-G solvation = -4450.022082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.53494 -47.53775 -40.71749 -39.61055 -37.71118 -36.84241 -34.49912 -32.43039 -31.09258 -29.72501 -28.34485 -27.55423 -25.50339 -24.50089 -23.27819 -23.12946 -21.29398 -20.48708 -19.33868 -18.51752 -17.84255 -17.72510 -17.66316 -17.00793 -16.55371 -16.30531 -15.77204 -15.23365 -15.05433 -14.80756 -14.78530 -14.42674 -14.28847 -13.94189 -13.89648 -13.84739 -13.49959 -13.21300 -12.91239 -12.57363 -12.53059 -12.32441 -12.20815 -12.15104 -11.92217 -11.79748 -11.29425 -11.26410 -11.14181 -11.04326 -11.03657 -10.77392 -10.30813 -9.83661 -9.62780 -9.36105 -9.05988 -8.54367 -8.23892 -6.50614 -6.21385 -3.92378 1.95412 2.42310 2.80221 2.96193 3.03956 3.05936 3.23490 3.26038 3.29318 3.52895 3.60920 3.80350 3.94060 4.00990 4.17981 4.20905 4.31025 4.40607 4.53710 4.69900 4.88651 4.92386 4.94363 5.06143 5.08388 5.13565 5.21071 5.41911 5.43712 5.45343 5.57731 5.62978 5.69389 5.80424 5.91087 6.06895 6.12435 6.37492 7.01778 7.58897 7.62833 7.72929 8.34933 8.54136 9.23540 10.85979 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.027096 B = 0.001933 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.103139 B =14480.177606 C =14962.682689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.513 6.513 13 N -0.626 5.626 14 C 0.103 3.897 15 C -0.138 4.138 16 C 0.135 3.865 17 H 0.106 0.894 18 N -0.712 5.712 19 C 0.556 3.444 20 O -0.520 6.520 21 C -0.240 4.240 22 C 0.309 3.691 23 F -0.195 7.195 24 F -0.198 7.198 25 C -0.122 4.122 26 C -0.134 4.134 27 C 0.101 3.899 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.406 0.594 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.298 -28.897 6.202 32.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.387 6.387 13 N -0.364 5.364 14 C -0.021 4.021 15 C -0.176 4.176 16 C 0.030 3.970 17 H 0.124 0.876 18 N -0.364 5.364 19 C 0.340 3.660 20 O -0.394 6.394 21 C -0.244 4.244 22 C 0.255 3.745 23 F -0.176 7.176 24 F -0.179 7.179 25 C -0.159 4.159 26 C -0.171 4.171 27 C -0.023 4.023 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.243 0.757 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.087 0.913 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.025 -29.002 5.359 31.150 hybrid contribution 2.373 1.410 0.451 2.797 sum 12.397 -27.592 5.810 30.802 Atomic orbital electron populations 1.70009 1.05959 1.27576 1.46721 1.24995 0.95035 0.99028 0.94532 0.86219 0.79231 0.81217 0.78797 1.19919 1.20810 1.19941 1.22814 0.94855 0.91589 1.59115 0.90961 1.85425 1.04921 0.96323 1.96719 1.23503 1.06508 0.94815 1.04831 1.20066 0.85673 0.85400 0.75188 1.90715 1.14972 1.85091 1.47931 1.48455 1.06611 1.05351 1.76031 1.22318 0.80517 0.97798 1.01447 1.23125 0.99012 0.93870 1.01627 1.22017 0.94925 0.84430 0.95652 0.87626 1.45914 1.64710 1.10848 1.14964 1.19052 0.77385 0.82917 0.86633 1.90754 1.45659 1.84605 1.18406 1.22593 0.93304 1.00578 1.07909 1.21139 0.82925 0.91288 0.79178 1.93041 1.68352 1.96059 1.60154 1.92990 1.89853 1.66794 1.68292 1.23118 0.97895 0.94777 1.00101 1.23173 0.94692 1.03005 0.96272 1.22205 0.96452 0.80731 1.02954 0.92114 0.89258 0.89189 0.90772 0.89602 0.89697 0.88909 0.75731 0.86032 0.86235 0.86918 0.86723 0.86809 0.91311 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.01 5.16 36.00 0.19 -2.83 16 11 C 0.55 10.85 7.87 -10.99 -0.09 10.76 16 12 O -0.51 -12.30 16.19 5.56 0.09 -12.21 16 13 N -0.63 -9.25 3.32 -170.38 -0.57 -9.82 16 14 C 0.10 1.06 6.70 -2.41 -0.02 1.04 16 15 C -0.14 -1.06 6.71 -24.46 -0.16 -1.22 16 16 C 0.14 1.33 3.19 -66.10 -0.21 1.12 16 17 H 0.11 1.12 7.77 -51.93 -0.40 0.71 16 18 N -0.71 -6.28 5.02 -52.03 -0.26 -6.54 16 19 C 0.56 5.65 6.96 -10.98 -0.08 5.57 16 20 O -0.52 -7.24 16.26 5.55 0.09 -7.15 16 21 C -0.24 -1.56 2.07 -155.66 -0.32 -1.88 16 22 C 0.31 1.66 5.09 37.16 0.19 1.85 16 23 F -0.19 -1.62 17.14 2.25 0.04 -1.58 16 24 F -0.20 -1.25 15.93 2.25 0.04 -1.22 16 25 C -0.12 -0.60 9.73 -26.69 -0.26 -0.86 16 26 C -0.13 -0.57 9.96 -26.69 -0.27 -0.83 16 27 C 0.10 1.35 6.62 -3.06 -0.02 1.33 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 29 H 0.09 1.68 7.86 -51.92 -0.41 1.28 16 30 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.84 7.49 -51.93 -0.39 0.45 16 33 H 0.08 0.59 8.01 -51.93 -0.42 0.18 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.41 2.86 7.22 -40.82 -0.29 2.57 16 36 H 0.12 0.20 8.09 -51.93 -0.42 -0.22 16 37 H 0.12 0.78 7.84 -51.93 -0.41 0.38 16 38 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -37.82 379.00 -7.87 -45.69 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.66 Total: -0.91 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.85 Total: 1.06 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.09 Total: -41.92 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.18 Total: -19.36 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.07 Total: -2.80 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.82 -7.87 -45.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294747747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.063 kcal (2) G-P(sol) polarization free energy of solvation -37.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds