Wall clock time and date at job start Wed Apr 1 2020 05:34:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86803 * 120.00001 * 2 1
4 4 H 1.48503 * 109.47446 * 240.00090 * 3 2 1
5 5 H 1.48503 * 109.47238 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.46959 * 120.00591 * 3 2 1
7 7 C 1.38800 * 120.00028 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99740 * 179.97438 * 7 2 1
9 9 S 1.76199 * 120.00066 * 359.97438 * 7 2 1
10 10 C 1.80997 * 100.00177 * 179.97438 * 9 7 2
11 11 C 1.50696 * 109.46938 * 179.97438 * 10 9 7
12 12 O 1.21278 * 120.00367 * 0.02562 * 11 10 9
13 13 N 1.34779 * 119.99527 * 179.72580 * 11 10 9
14 14 C 1.47417 * 125.65176 * 359.96806 * 13 11 10
15 15 C 1.55135 * 104.72354 * 155.81762 * 14 13 11
16 16 C 1.55156 * 101.48561 * 37.29566 * 15 14 13
17 17 H 1.09006 * 110.71888 * 82.69621 * 16 15 14
18 18 N 1.46493 * 110.87343 * 205.89685 * 16 15 14
19 19 C 1.34777 * 120.00027 * 200.06288 * 18 16 15
20 20 O 1.21283 * 120.00252 * 355.19142 * 19 18 16
21 21 C 1.50701 * 119.99939 * 175.19287 * 19 18 16
22 22 C 1.53001 * 115.54962 * 304.08480 * 21 19 18
23 23 F 1.39905 * 109.47221 * 305.21351 * 22 21 19
24 24 F 1.39901 * 109.47282 * 65.20646 * 22 21 19
25 25 C 1.53000 * 117.49948 * 158.41691 * 21 19 18
26 26 C 1.52997 * 117.50208 * 89.75528 * 21 19 18
27 27 C 1.47029 * 125.64565 * 180.28056 * 13 11 10
28 28 H 0.97008 * 120.00001 * 359.97438 * 1 2 3
29 29 H 1.08999 * 109.46890 * 60.00006 * 10 9 7
30 30 H 1.08998 * 109.47284 * 300.00148 * 10 9 7
31 31 H 1.09000 * 110.37098 * 274.74913 * 14 13 11
32 32 H 1.08997 * 110.36550 * 37.07124 * 14 13 11
33 33 H 1.08996 * 111.18975 * 279.19439 * 15 14 13
34 34 H 1.09004 * 110.93827 * 155.28985 * 15 14 13
35 35 H 0.97005 * 120.00304 * 20.07195 * 18 16 15
36 36 H 1.08998 * 109.47620 * 185.20931 * 22 21 19
37 37 H 1.08998 * 117.50010 * 0.02562 * 25 21 19
38 38 H 1.09005 * 117.49517 * 145.01767 * 25 21 19
39 39 H 1.09001 * 117.49997 * 214.98291 * 26 21 19
40 40 H 1.09000 * 117.49901 * 0.02562 * 26 21 19
41 41 H 1.09005 * 109.88037 * 300.44053 * 27 13 11
42 42 H 1.08993 * 109.88685 * 61.44746 * 27 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.1040 1.6965 -1.2125
5 1 1.2853 2.7465 0.0006
6 1 3.1041 1.6963 1.2124
7 6 2.0102 -1.2020 -0.0005
8 1 3.0903 -1.2020 -0.0010
9 16 1.1293 -2.7280 -0.0005
10 6 2.5158 -3.8914 -0.0021
11 6 1.9873 -5.3027 -0.0017
12 8 0.7910 -5.5023 -0.0009
13 7 2.8440 -6.3430 -0.0083
14 6 4.3149 -6.2448 -0.0170
15 6 4.8032 -7.5851 0.5928
16 6 3.7728 -8.5853 0.0054
17 1 4.0566 -8.8831 -1.0040
18 7 3.6337 -9.7595 0.8703
19 6 3.1232 -10.9045 0.3752
20 8 2.6986 -10.9380 -0.7604
21 6 3.0801 -12.1430 1.2326
22 6 4.4234 -12.5919 1.8115
23 9 5.3482 -12.7521 0.7740
24 9 4.8914 -11.6252 2.7079
25 6 2.0763 -13.2324 0.8501
26 6 1.8319 -12.3666 2.0886
27 6 2.4664 -7.7640 -0.0146
28 1 -0.4850 0.8401 0.0004
29 1 3.1250 -3.7317 0.8875
30 1 3.1237 -3.7310 -0.8925
31 1 4.6818 -6.1336 -1.0373
32 1 4.6427 -5.4069 0.5983
33 1 4.7512 -7.5648 1.6814
34 1 5.8127 -7.8213 0.2563
35 1 3.9088 -9.7130 1.7993
36 1 4.2954 -13.5400 2.3338
37 1 1.4473 -13.0536 -0.0219
38 1 2.3727 -14.2690 1.0113
39 1 1.9676 -12.8338 3.0640
40 1 1.0416 -11.6181 2.0313
41 1 1.8709 -7.9932 0.8691
42 1 1.8962 -7.9921 -0.9150
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001294747747.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:34:12
Heat of formation + Delta-G solvation = -141.753358 kcal
Electronic energy + Delta-G solvation = -27917.382997 eV
Core-core repulsion = 23467.360914 eV
Total energy + Delta-G solvation = -4450.022082 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 348.111 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-49.53494 -47.53775 -40.71749 -39.61055 -37.71118 -36.84241 -34.49912 -32.43039
-31.09258 -29.72501 -28.34485 -27.55423 -25.50339 -24.50089 -23.27819 -23.12946
-21.29398 -20.48708 -19.33868 -18.51752 -17.84255 -17.72510 -17.66316 -17.00793
-16.55371 -16.30531 -15.77204 -15.23365 -15.05433 -14.80756 -14.78530 -14.42674
-14.28847 -13.94189 -13.89648 -13.84739 -13.49959 -13.21300 -12.91239 -12.57363
-12.53059 -12.32441 -12.20815 -12.15104 -11.92217 -11.79748 -11.29425 -11.26410
-11.14181 -11.04326 -11.03657 -10.77392 -10.30813 -9.83661 -9.62780 -9.36105
-9.05988 -8.54367 -8.23892 -6.50614 -6.21385 -3.92378 1.95412 2.42310
2.80221 2.96193 3.03956 3.05936 3.23490 3.26038 3.29318 3.52895
3.60920 3.80350 3.94060 4.00990 4.17981 4.20905 4.31025 4.40607
4.53710 4.69900 4.88651 4.92386 4.94363 5.06143 5.08388 5.13565
5.21071 5.41911 5.43712 5.45343 5.57731 5.62978 5.69389 5.80424
5.91087 6.06895 6.12435 6.37492 7.01778 7.58897 7.62833 7.72929
8.34933 8.54136 9.23540 10.85979
Molecular weight = 348.11amu
Principal moments of inertia in cm(-1)
A = 0.027096 B = 0.001933 C = 0.001871
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1033.103139 B =14480.177606 C =14962.682689
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.073 3.927
3 Si 0.919 3.081
4 H -0.274 1.274
5 H -0.283 1.283
6 H -0.274 1.274
7 C -0.536 4.536
8 H 0.072 0.928
9 S -0.061 6.061
10 C -0.146 4.146
11 C 0.548 3.452
12 O -0.513 6.513
13 N -0.626 5.626
14 C 0.103 3.897
15 C -0.138 4.138
16 C 0.135 3.865
17 H 0.106 0.894
18 N -0.712 5.712
19 C 0.556 3.444
20 O -0.520 6.520
21 C -0.240 4.240
22 C 0.309 3.691
23 F -0.195 7.195
24 F -0.198 7.198
25 C -0.122 4.122
26 C -0.134 4.134
27 C 0.101 3.899
28 H 0.269 0.731
29 H 0.089 0.911
30 H 0.090 0.910
31 H 0.074 0.926
32 H 0.086 0.914
33 H 0.084 0.916
34 H 0.092 0.908
35 H 0.406 0.594
36 H 0.122 0.878
37 H 0.119 0.881
38 H 0.113 0.887
39 H 0.115 0.885
40 H 0.114 0.886
41 H 0.069 0.931
42 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.298 -28.897 6.202 32.012
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.136 4.136
3 Si 0.745 3.255
4 H -0.199 1.199
5 H -0.208 1.208
6 H -0.199 1.199
7 C -0.684 4.684
8 H 0.090 0.910
9 S 0.166 5.834
10 C -0.297 4.297
11 C 0.337 3.663
12 O -0.387 6.387
13 N -0.364 5.364
14 C -0.021 4.021
15 C -0.176 4.176
16 C 0.030 3.970
17 H 0.124 0.876
18 N -0.364 5.364
19 C 0.340 3.660
20 O -0.394 6.394
21 C -0.244 4.244
22 C 0.255 3.745
23 F -0.176 7.176
24 F -0.179 7.179
25 C -0.159 4.159
26 C -0.171 4.171
27 C -0.023 4.023
28 H 0.079 0.921
29 H 0.107 0.893
30 H 0.108 0.892
31 H 0.092 0.908
32 H 0.104 0.896
33 H 0.103 0.897
34 H 0.111 0.889
35 H 0.243 0.757
36 H 0.140 0.860
37 H 0.138 0.862
38 H 0.131 0.869
39 H 0.133 0.867
40 H 0.132 0.868
41 H 0.087 0.913
42 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 10.025 -29.002 5.359 31.150
hybrid contribution 2.373 1.410 0.451 2.797
sum 12.397 -27.592 5.810 30.802
Atomic orbital electron populations
1.70009 1.05959 1.27576 1.46721 1.24995 0.95035 0.99028 0.94532
0.86219 0.79231 0.81217 0.78797 1.19919 1.20810 1.19941 1.22814
0.94855 0.91589 1.59115 0.90961 1.85425 1.04921 0.96323 1.96719
1.23503 1.06508 0.94815 1.04831 1.20066 0.85673 0.85400 0.75188
1.90715 1.14972 1.85091 1.47931 1.48455 1.06611 1.05351 1.76031
1.22318 0.80517 0.97798 1.01447 1.23125 0.99012 0.93870 1.01627
1.22017 0.94925 0.84430 0.95652 0.87626 1.45914 1.64710 1.10848
1.14964 1.19052 0.77385 0.82917 0.86633 1.90754 1.45659 1.84605
1.18406 1.22593 0.93304 1.00578 1.07909 1.21139 0.82925 0.91288
0.79178 1.93041 1.68352 1.96059 1.60154 1.92990 1.89853 1.66794
1.68292 1.23118 0.97895 0.94777 1.00101 1.23173 0.94692 1.03005
0.96272 1.22205 0.96452 0.80731 1.02954 0.92114 0.89258 0.89189
0.90772 0.89602 0.89697 0.88909 0.75731 0.86032 0.86235 0.86918
0.86723 0.86809 0.91311 0.90815
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16
2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16
4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
7 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16
8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16
9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16
10 C -0.15 -3.01 5.16 36.00 0.19 -2.83 16
11 C 0.55 10.85 7.87 -10.99 -0.09 10.76 16
12 O -0.51 -12.30 16.19 5.56 0.09 -12.21 16
13 N -0.63 -9.25 3.32 -170.38 -0.57 -9.82 16
14 C 0.10 1.06 6.70 -2.41 -0.02 1.04 16
15 C -0.14 -1.06 6.71 -24.46 -0.16 -1.22 16
16 C 0.14 1.33 3.19 -66.10 -0.21 1.12 16
17 H 0.11 1.12 7.77 -51.93 -0.40 0.71 16
18 N -0.71 -6.28 5.02 -52.03 -0.26 -6.54 16
19 C 0.56 5.65 6.96 -10.98 -0.08 5.57 16
20 O -0.52 -7.24 16.26 5.55 0.09 -7.15 16
21 C -0.24 -1.56 2.07 -155.66 -0.32 -1.88 16
22 C 0.31 1.66 5.09 37.16 0.19 1.85 16
23 F -0.19 -1.62 17.14 2.25 0.04 -1.58 16
24 F -0.20 -1.25 15.93 2.25 0.04 -1.22 16
25 C -0.12 -0.60 9.73 -26.69 -0.26 -0.86 16
26 C -0.13 -0.57 9.96 -26.69 -0.27 -0.83 16
27 C 0.10 1.35 6.62 -3.06 -0.02 1.33 16
28 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16
29 H 0.09 1.68 7.86 -51.92 -0.41 1.28 16
30 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16
31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.09 0.84 7.49 -51.93 -0.39 0.45 16
33 H 0.08 0.59 8.01 -51.93 -0.42 0.18 16
34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16
35 H 0.41 2.86 7.22 -40.82 -0.29 2.57 16
36 H 0.12 0.20 8.09 -51.93 -0.42 -0.22 16
37 H 0.12 0.78 7.84 -51.93 -0.41 0.38 16
38 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16
39 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16
40 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16
41 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16
42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16
LS Contribution 379.00 15.07 5.71 5.71
Total: -1.00 -37.82 379.00 -7.87 -45.69
By element:
Atomic # 1 Polarization: 4.75 SS G_CDS: -5.66 Total: -0.91 kcal
Atomic # 6 Polarization: 1.91 SS G_CDS: -0.85 Total: 1.06 kcal
Atomic # 7 Polarization: -41.82 SS G_CDS: -0.09 Total: -41.92 kcal
Atomic # 8 Polarization: -19.54 SS G_CDS: 0.18 Total: -19.36 kcal
Atomic # 9 Polarization: -2.87 SS G_CDS: 0.07 Total: -2.80 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal
Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -37.82 -7.87 -45.69 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001294747747.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.063 kcal
(2) G-P(sol) polarization free energy of solvation -37.819 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.690 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.753 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds