Wall clock time and date at job start Wed Apr 1 2020 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48503 * 109.47446 * 240.00090 * 3 2 1 5 5 H 1.48503 * 109.47238 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46959 * 120.00591 * 3 2 1 7 7 C 1.38800 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99740 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00177 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46938 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00367 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99527 * 179.72580 * 11 10 9 14 14 C 1.47417 * 125.65176 * 359.96806 * 13 11 10 15 15 C 1.55135 * 104.72354 * 155.81762 * 14 13 11 16 16 C 1.55156 * 101.48561 * 37.29566 * 15 14 13 17 17 H 1.09006 * 110.71888 * 82.69621 * 16 15 14 18 18 N 1.46493 * 110.87343 * 205.89685 * 16 15 14 19 19 C 1.34777 * 120.00027 * 200.06288 * 18 16 15 20 20 O 1.21283 * 120.00252 * 355.19142 * 19 18 16 21 21 C 1.50701 * 119.99939 * 175.19287 * 19 18 16 22 22 C 1.53001 * 115.54962 * 304.08480 * 21 19 18 23 23 F 1.39905 * 109.47221 * 305.21351 * 22 21 19 24 24 F 1.39901 * 109.47282 * 65.20646 * 22 21 19 25 25 C 1.53000 * 117.49948 * 158.41691 * 21 19 18 26 26 C 1.52997 * 117.50208 * 89.75528 * 21 19 18 27 27 C 1.47029 * 125.64565 * 180.28056 * 13 11 10 28 28 H 0.97008 * 120.00001 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46890 * 60.00006 * 10 9 7 30 30 H 1.08998 * 109.47284 * 300.00148 * 10 9 7 31 31 H 1.09000 * 110.37098 * 274.74913 * 14 13 11 32 32 H 1.08997 * 110.36550 * 37.07124 * 14 13 11 33 33 H 1.08996 * 111.18975 * 279.19439 * 15 14 13 34 34 H 1.09004 * 110.93827 * 155.28985 * 15 14 13 35 35 H 0.97005 * 120.00304 * 20.07195 * 18 16 15 36 36 H 1.08998 * 109.47620 * 185.20931 * 22 21 19 37 37 H 1.08998 * 117.50010 * 0.02562 * 25 21 19 38 38 H 1.09005 * 117.49517 * 145.01767 * 25 21 19 39 39 H 1.09001 * 117.49997 * 214.98291 * 26 21 19 40 40 H 1.09000 * 117.49901 * 0.02562 * 26 21 19 41 41 H 1.09005 * 109.88037 * 300.44053 * 27 13 11 42 42 H 1.08993 * 109.88685 * 61.44746 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8440 -6.3430 -0.0083 14 6 4.3149 -6.2448 -0.0170 15 6 4.8032 -7.5851 0.5928 16 6 3.7728 -8.5853 0.0054 17 1 4.0566 -8.8831 -1.0040 18 7 3.6337 -9.7595 0.8703 19 6 3.1232 -10.9045 0.3752 20 8 2.6986 -10.9380 -0.7604 21 6 3.0801 -12.1430 1.2326 22 6 4.4234 -12.5919 1.8115 23 9 5.3482 -12.7521 0.7740 24 9 4.8914 -11.6252 2.7079 25 6 2.0763 -13.2324 0.8501 26 6 1.8319 -12.3666 2.0886 27 6 2.4664 -7.7640 -0.0146 28 1 -0.4850 0.8401 0.0004 29 1 3.1250 -3.7317 0.8875 30 1 3.1237 -3.7310 -0.8925 31 1 4.6818 -6.1336 -1.0373 32 1 4.6427 -5.4069 0.5983 33 1 4.7512 -7.5648 1.6814 34 1 5.8127 -7.8213 0.2563 35 1 3.9088 -9.7130 1.7993 36 1 4.2954 -13.5400 2.3338 37 1 1.4473 -13.0536 -0.0219 38 1 2.3727 -14.2690 1.0113 39 1 1.9676 -12.8338 3.0640 40 1 1.0416 -11.6181 2.0313 41 1 1.8709 -7.9932 0.8691 42 1 1.8962 -7.9921 -0.9150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294747747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:11 Heat of formation + Delta-G solvation = -168.799935 kcal Electronic energy + Delta-G solvation = -27918.555824 eV Core-core repulsion = 23467.360914 eV Total energy + Delta-G solvation = -4451.194910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.97567 -47.99621 -41.59402 -40.77060 -38.77761 -37.60463 -35.49936 -34.59457 -32.30849 -30.93805 -29.36742 -28.15034 -27.65529 -25.38854 -24.11097 -23.51270 -22.16311 -21.22050 -20.69610 -19.65021 -19.02369 -18.38227 -18.18810 -18.11633 -17.71356 -16.93302 -16.88971 -16.84336 -16.56366 -15.95645 -15.71772 -15.60124 -15.34464 -14.89180 -14.68478 -14.56569 -14.44333 -14.36405 -14.04139 -13.75424 -13.66814 -13.40100 -13.18199 -13.00884 -12.86491 -12.78881 -12.70518 -12.64230 -12.54775 -11.97367 -11.76650 -11.72913 -11.61825 -11.13404 -11.12232 -11.04416 -10.39504 -10.30148 -9.82520 -8.70211 -8.35104 -6.14602 1.17372 1.24881 1.41946 1.44247 1.49006 1.53879 1.76365 2.13119 2.26592 2.39259 2.62498 2.99002 3.17131 3.23426 3.27789 3.35796 3.44447 3.56041 3.61009 3.83496 3.92389 4.06235 4.08097 4.13698 4.20037 4.25666 4.41512 4.53383 4.55687 4.64371 4.66194 4.69761 4.87601 4.88217 4.98212 5.08668 5.19792 5.29616 5.40788 6.18879 6.26484 6.31095 6.98278 7.03013 7.05682 8.74016 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.027096 B = 0.001933 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.103139 B =14480.177606 C =14962.682689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.155 6.155 10 C -0.117 4.117 11 C 0.545 3.455 12 O -0.569 6.569 13 N -0.615 5.615 14 C 0.090 3.910 15 C -0.120 4.120 16 C 0.143 3.857 17 H 0.099 0.901 18 N -0.703 5.703 19 C 0.546 3.454 20 O -0.568 6.568 21 C -0.256 4.256 22 C 0.307 3.693 23 F -0.215 7.215 24 F -0.204 7.204 25 C -0.121 4.121 26 C -0.117 4.117 27 C 0.101 3.899 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.417 0.583 36 H 0.171 0.829 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.737 -29.917 7.806 34.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.072 5.928 10 C -0.268 4.268 11 C 0.333 3.667 12 O -0.448 6.448 13 N -0.351 5.351 14 C -0.031 4.031 15 C -0.158 4.158 16 C 0.037 3.963 17 H 0.117 0.883 18 N -0.355 5.355 19 C 0.333 3.667 20 O -0.446 6.446 21 C -0.260 4.260 22 C 0.254 3.746 23 F -0.196 7.196 24 F -0.185 7.185 25 C -0.158 4.158 26 C -0.154 4.154 27 C -0.023 4.023 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.256 0.744 36 H 0.188 0.812 37 H 0.112 0.888 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.539 -30.059 6.995 33.701 hybrid contribution 1.309 1.595 -0.073 2.064 sum 14.848 -28.464 6.922 32.841 Atomic orbital electron populations 1.70187 1.08061 1.28709 1.47911 1.26173 0.95987 1.03437 0.93687 0.84974 0.77767 0.75471 0.79591 1.18603 1.20493 1.18438 1.23155 0.95383 0.91667 1.59034 0.89649 1.85663 1.10649 0.99455 1.97067 1.23286 1.03433 0.93277 1.06776 1.19930 0.85393 0.86116 0.75251 1.90692 1.17347 1.85814 1.50912 1.48370 1.08445 1.04807 1.73474 1.22764 0.77198 1.00000 1.03182 1.23133 0.99479 0.90893 1.02266 1.21871 0.93459 0.84831 0.96151 0.88280 1.45882 1.64070 1.10234 1.15352 1.19817 0.76177 0.84212 0.86530 1.90729 1.47699 1.85527 1.20670 1.22625 0.95149 0.99403 1.08801 1.21608 0.81341 0.92883 0.78774 1.93002 1.69086 1.96175 1.61349 1.92973 1.89851 1.67394 1.68282 1.23235 0.96797 0.96183 0.99632 1.23312 0.92502 1.02071 0.97499 1.22265 0.98378 0.80484 1.01213 0.91985 0.86883 0.87256 0.89162 0.88186 0.88269 0.85728 0.74417 0.81225 0.88765 0.83627 0.83187 0.88345 0.92259 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.54 -31.20 9.50 67.95 0.65 -30.56 16 8 H 0.09 4.49 7.80 -2.91 -0.02 4.46 16 9 S -0.16 -8.83 20.57 -56.49 -1.16 -9.99 16 10 C -0.12 -4.77 5.16 71.23 0.37 -4.40 16 11 C 0.54 21.91 7.87 87.66 0.69 22.60 16 12 O -0.57 -28.71 16.19 -3.02 -0.05 -28.76 16 13 N -0.62 -17.91 3.32 -811.36 -2.70 -20.61 16 14 C 0.09 1.61 6.70 86.94 0.58 2.19 16 15 C -0.12 -1.45 6.71 32.07 0.22 -1.23 16 16 C 0.14 2.68 3.19 46.18 0.15 2.82 16 17 H 0.10 2.05 7.77 -2.38 -0.02 2.04 16 18 N -0.70 -11.76 5.02 -436.92 -2.19 -13.95 16 19 C 0.55 11.06 6.96 87.66 0.61 11.68 16 20 O -0.57 -16.61 16.26 -3.04 -0.05 -16.66 16 21 C -0.26 -2.92 2.07 -52.93 -0.11 -3.03 16 22 C 0.31 2.43 5.09 71.98 0.37 2.80 16 23 F -0.21 -3.18 17.14 44.97 0.77 -2.40 16 24 F -0.20 -1.99 15.93 44.97 0.72 -1.27 16 25 C -0.12 -1.01 9.73 30.62 0.30 -0.71 16 26 C -0.12 -0.74 9.96 30.62 0.30 -0.43 16 27 C 0.10 2.77 6.62 86.73 0.57 3.34 16 28 H 0.27 15.63 8.31 -92.70 -0.77 14.85 16 29 H 0.11 4.07 7.86 -2.40 -0.02 4.05 16 30 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.58 7.49 -2.39 -0.02 1.56 16 33 H 0.10 0.99 8.01 -2.39 -0.02 0.97 16 34 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.42 5.10 7.22 -92.70 -0.67 4.43 16 36 H 0.17 -0.25 8.09 -2.39 -0.02 -0.27 16 37 H 0.09 1.29 7.84 -2.39 -0.02 1.27 16 38 H 0.15 0.20 8.14 -2.38 -0.02 0.18 16 39 H 0.15 -0.10 8.14 -2.39 -0.02 -0.12 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.73 8.03 -2.38 -0.02 1.71 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -88.73 379.00 3.20 -85.53 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.39 Total: 12.62 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 5.16 Total: 6.20 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -4.61 Total: -90.84 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.10 Total: -45.42 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 1.49 Total: -3.68 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -88.73 3.20 -85.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294747747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.268 kcal (2) G-P(sol) polarization free energy of solvation -88.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds