Wall clock time and date at job start Wed Apr 1 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48504 * 109.46793 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47282 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47237 * 60.00639 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.47419 * 125.65146 * 359.74383 * 13 11 10 15 15 C 1.54911 * 104.83630 * 204.09512 * 14 13 11 16 16 C 1.55156 * 101.57846 * 322.99597 * 15 14 13 17 17 H 1.09001 * 110.71751 * 277.13125 * 16 15 14 18 18 N 1.46501 * 110.71849 * 154.04308 * 16 15 14 19 19 C 1.34780 * 119.99772 * 155.00123 * 18 16 15 20 20 O 1.21282 * 120.00275 * 359.97438 * 19 18 16 21 21 C 1.50704 * 119.99795 * 179.97438 * 19 18 16 22 22 C 1.53002 * 115.54769 * 34.41340 * 21 19 18 23 23 F 1.39901 * 109.47126 * 85.58420 * 22 21 19 24 24 F 1.39901 * 109.47030 * 205.58375 * 22 21 19 25 25 C 1.52993 * 117.49738 * 248.74259 * 21 19 18 26 26 C 1.52996 * 117.49816 * 180.08325 * 21 19 18 27 27 C 1.47028 * 125.64354 * 179.44686 * 13 11 10 28 28 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 30 30 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 31 31 H 1.08998 * 110.36747 * 322.93640 * 14 13 11 32 32 H 1.09003 * 110.36475 * 85.25954 * 14 13 11 33 33 H 1.09001 * 110.99900 * 81.06373 * 15 14 13 34 34 H 1.08996 * 111.00203 * 204.91981 * 15 14 13 35 35 H 0.96995 * 119.99870 * 334.99240 * 18 16 15 36 36 H 1.08998 * 109.47297 * 325.58217 * 22 21 19 37 37 H 1.08993 * 117.50170 * 0.02562 * 25 21 19 38 38 H 1.09000 * 117.49963 * 145.02273 * 25 21 19 39 39 H 1.09001 * 117.49646 * 214.98096 * 26 21 19 40 40 H 1.09005 * 117.50077 * 359.97351 * 26 21 19 41 41 H 1.09007 * 109.87760 * 298.38550 * 27 13 11 42 42 H 1.08992 * 109.88468 * 59.55598 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 4.3151 -6.2448 0.0025 15 6 4.8021 -7.5850 -0.6029 16 6 3.7730 -8.5853 -0.0131 17 1 4.0592 -8.8831 0.9956 18 7 3.6364 -9.7592 -0.8789 19 6 3.2222 -10.9331 -0.3621 20 8 2.9631 -11.0177 0.8196 21 6 3.0812 -12.1405 -1.2529 22 6 4.1024 -12.2465 -2.3873 23 9 5.2627 -12.8682 -1.9136 24 9 3.5615 -13.0030 -3.4324 25 6 1.6667 -12.6560 -1.5251 26 6 2.6050 -13.4431 -0.6069 27 6 2.4666 -7.7640 0.0154 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1238 -3.7309 -0.8925 31 1 4.6393 -5.4087 -0.6170 32 1 4.6880 -6.1307 1.0204 33 1 4.7475 -7.5647 -1.6913 34 1 5.8122 -7.8208 -0.2681 35 1 3.8439 -9.6915 -1.8240 36 1 4.3472 -11.2483 -2.7502 37 1 0.8381 -12.1218 -1.0604 38 1 1.4637 -13.0712 -2.5123 39 1 3.0190 -14.3757 -0.9904 40 1 2.3942 -13.4269 0.4624 41 1 1.9040 -7.9901 0.9213 42 1 1.8660 -7.9957 -0.8641 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294747748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:15 Heat of formation + Delta-G solvation = -138.903159 kcal Electronic energy + Delta-G solvation = -27696.484882 eV Core-core repulsion = 23246.586394 eV Total energy + Delta-G solvation = -4449.898488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.60084 -47.57965 -40.86085 -39.68029 -37.68582 -36.73822 -34.70502 -32.45649 -31.25819 -29.80964 -28.68932 -27.50814 -25.52766 -24.38755 -23.23501 -23.11157 -21.47662 -20.43018 -19.42131 -18.93574 -17.90148 -17.76048 -17.73021 -17.02329 -16.60641 -16.19114 -15.85958 -15.30766 -15.01618 -14.89021 -14.82922 -14.45463 -14.29301 -14.04012 -13.93839 -13.90001 -13.59226 -13.30062 -12.97562 -12.63351 -12.57852 -12.33726 -12.32796 -12.04038 -12.01015 -11.85424 -11.30164 -11.24574 -11.09378 -11.07415 -11.04484 -10.78750 -10.46685 -9.85308 -9.75398 -9.43939 -9.10102 -8.61174 -8.26291 -6.53676 -6.24414 -3.95426 1.82236 2.29839 2.80022 2.89732 3.00283 3.11022 3.19551 3.23980 3.29060 3.48806 3.56195 3.62836 3.95096 4.02665 4.14710 4.17238 4.22322 4.39357 4.54850 4.60357 4.84014 4.93960 5.00229 5.01683 5.04956 5.10842 5.29401 5.33883 5.37848 5.48225 5.52720 5.56257 5.60679 5.71681 5.86056 5.93490 6.08298 6.30693 6.82531 7.55392 7.57540 7.57795 8.32560 8.48614 9.20908 10.83067 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.001846 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.901054 B =15165.323968 C =15461.906779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.512 6.512 13 N -0.626 5.626 14 C 0.103 3.897 15 C -0.139 4.139 16 C 0.133 3.867 17 H 0.111 0.889 18 N -0.717 5.717 19 C 0.561 3.439 20 O -0.517 6.517 21 C -0.244 4.244 22 C 0.306 3.694 23 F -0.194 7.194 24 F -0.194 7.194 25 C -0.126 4.126 26 C -0.122 4.122 27 C 0.099 3.901 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.400 0.600 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.532 -26.319 -5.399 29.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.386 6.386 13 N -0.365 5.365 14 C -0.021 4.021 15 C -0.178 4.178 16 C 0.028 3.972 17 H 0.129 0.871 18 N -0.369 5.369 19 C 0.346 3.654 20 O -0.392 6.392 21 C -0.248 4.248 22 C 0.252 3.748 23 F -0.175 7.175 24 F -0.175 7.175 25 C -0.163 4.163 26 C -0.159 4.159 27 C -0.025 4.025 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.236 0.764 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.092 0.908 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.349 -26.517 -4.539 28.824 hybrid contribution 2.234 1.307 -0.584 2.653 sum 12.583 -25.209 -5.123 28.637 Atomic orbital electron populations 1.70029 1.05959 1.27389 1.46853 1.25005 0.95042 0.99070 0.94529 0.86105 0.79556 0.81836 0.77923 1.19610 1.20560 1.20543 1.22889 0.94913 0.91535 1.58934 0.90853 1.85440 1.04892 0.96397 1.96711 1.23506 1.06540 0.94780 1.04841 1.20078 0.85666 0.85400 0.75156 1.90722 1.14962 1.85074 1.47844 1.48447 1.06599 1.05286 1.76145 1.22274 0.80528 0.97771 1.01544 1.23107 0.99109 0.93996 1.01549 1.22055 0.94971 0.84226 0.95922 0.87102 1.45896 1.68993 1.09435 1.12617 1.18954 0.76426 0.82536 0.87454 1.90764 1.48625 1.84297 1.15492 1.22632 1.01053 0.98970 1.02145 1.20909 0.79745 0.91599 0.82518 1.93039 1.50259 1.85270 1.88945 1.93002 1.86210 1.79275 1.59063 1.23223 0.89257 1.01049 1.02820 1.23104 0.99959 0.91709 1.01174 1.22210 0.96396 0.80882 1.03021 0.92203 0.89176 0.89248 0.89566 0.90759 0.89786 0.88822 0.76412 0.86941 0.86816 0.86293 0.87118 0.86192 0.90784 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.53 -15.06 9.50 30.94 0.29 -14.76 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -2.92 5.16 36.01 0.19 -2.74 16 11 C 0.55 10.41 7.87 -10.98 -0.09 10.32 16 12 O -0.51 -11.90 16.19 5.55 0.09 -11.81 16 13 N -0.63 -8.60 3.33 -170.51 -0.57 -9.16 16 14 C 0.10 0.94 6.69 -2.53 -0.02 0.92 16 15 C -0.14 -0.85 6.72 -24.58 -0.17 -1.01 16 16 C 0.13 1.09 3.30 -66.09 -0.22 0.87 16 17 H 0.11 1.01 7.55 -51.93 -0.39 0.62 16 18 N -0.72 -4.83 5.02 -52.02 -0.26 -5.09 16 19 C 0.56 4.93 7.39 -10.98 -0.08 4.85 16 20 O -0.52 -6.51 15.90 5.56 0.09 -6.42 16 21 C -0.24 -1.62 2.36 -155.66 -0.37 -1.99 16 22 C 0.31 1.70 5.27 37.16 0.20 1.90 16 23 F -0.19 -1.48 17.29 2.25 0.04 -1.44 16 24 F -0.19 -1.27 15.91 2.25 0.04 -1.24 16 25 C -0.13 -0.72 9.63 -26.70 -0.26 -0.98 16 26 C -0.12 -0.78 9.69 -26.70 -0.26 -1.04 16 27 C 0.10 1.19 6.64 -3.06 -0.02 1.17 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 30 H 0.09 1.63 7.85 -51.92 -0.41 1.22 16 31 H 0.09 0.76 7.49 -51.93 -0.39 0.37 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.43 8.01 -51.93 -0.42 0.01 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.40 1.56 6.87 -40.82 -0.28 1.28 16 36 H 0.11 0.29 6.39 -51.93 -0.33 -0.05 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.12 0.54 7.22 -51.93 -0.37 0.17 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.12 0.88 7.67 -51.93 -0.40 0.48 16 41 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 42 H 0.07 0.87 8.03 -51.93 -0.42 0.46 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -37.07 376.05 -7.79 -44.86 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.49 Total: -1.88 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.89 Total: -0.51 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.09 Total: -39.53 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.18 Total: -18.24 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.07 Total: -2.68 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.07 -7.79 -44.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294747748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.043 kcal (2) G-P(sol) polarization free energy of solvation -37.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds