Wall clock time and date at job start Wed Apr 1 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48504 * 109.46793 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47282 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47237 * 60.00639 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.47419 * 125.65146 * 359.74383 * 13 11 10 15 15 C 1.54911 * 104.83630 * 204.09512 * 14 13 11 16 16 C 1.55156 * 101.57846 * 322.99597 * 15 14 13 17 17 H 1.09001 * 110.71751 * 277.13125 * 16 15 14 18 18 N 1.46501 * 110.71849 * 154.04308 * 16 15 14 19 19 C 1.34780 * 119.99772 * 155.00123 * 18 16 15 20 20 O 1.21282 * 120.00275 * 359.97438 * 19 18 16 21 21 C 1.50704 * 119.99795 * 179.97438 * 19 18 16 22 22 C 1.53002 * 115.54769 * 34.41340 * 21 19 18 23 23 F 1.39901 * 109.47126 * 85.58420 * 22 21 19 24 24 F 1.39901 * 109.47030 * 205.58375 * 22 21 19 25 25 C 1.52993 * 117.49738 * 248.74259 * 21 19 18 26 26 C 1.52996 * 117.49816 * 180.08325 * 21 19 18 27 27 C 1.47028 * 125.64354 * 179.44686 * 13 11 10 28 28 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 30 30 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 31 31 H 1.08998 * 110.36747 * 322.93640 * 14 13 11 32 32 H 1.09003 * 110.36475 * 85.25954 * 14 13 11 33 33 H 1.09001 * 110.99900 * 81.06373 * 15 14 13 34 34 H 1.08996 * 111.00203 * 204.91981 * 15 14 13 35 35 H 0.96995 * 119.99870 * 334.99240 * 18 16 15 36 36 H 1.08998 * 109.47297 * 325.58217 * 22 21 19 37 37 H 1.08993 * 117.50170 * 0.02562 * 25 21 19 38 38 H 1.09000 * 117.49963 * 145.02273 * 25 21 19 39 39 H 1.09001 * 117.49646 * 214.98096 * 26 21 19 40 40 H 1.09005 * 117.50077 * 359.97351 * 26 21 19 41 41 H 1.09007 * 109.87760 * 298.38550 * 27 13 11 42 42 H 1.08992 * 109.88468 * 59.55598 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 4.3151 -6.2448 0.0025 15 6 4.8021 -7.5850 -0.6029 16 6 3.7730 -8.5853 -0.0131 17 1 4.0592 -8.8831 0.9956 18 7 3.6364 -9.7592 -0.8789 19 6 3.2222 -10.9331 -0.3621 20 8 2.9631 -11.0177 0.8196 21 6 3.0812 -12.1405 -1.2529 22 6 4.1024 -12.2465 -2.3873 23 9 5.2627 -12.8682 -1.9136 24 9 3.5615 -13.0030 -3.4324 25 6 1.6667 -12.6560 -1.5251 26 6 2.6050 -13.4431 -0.6069 27 6 2.4666 -7.7640 0.0154 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1238 -3.7309 -0.8925 31 1 4.6393 -5.4087 -0.6170 32 1 4.6880 -6.1307 1.0204 33 1 4.7475 -7.5647 -1.6913 34 1 5.8122 -7.8208 -0.2681 35 1 3.8439 -9.6915 -1.8240 36 1 4.3472 -11.2483 -2.7502 37 1 0.8381 -12.1218 -1.0604 38 1 1.4637 -13.0712 -2.5123 39 1 3.0190 -14.3757 -0.9904 40 1 2.3942 -13.4269 0.4624 41 1 1.9040 -7.9901 0.9213 42 1 1.8660 -7.9957 -0.8641 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294747748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:14 Heat of formation + Delta-G solvation = -164.976880 kcal Electronic energy + Delta-G solvation = -27697.615523 eV Core-core repulsion = 23246.586394 eV Total energy + Delta-G solvation = -4451.029130 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.07211 -48.06320 -41.63914 -40.79179 -38.74457 -37.44727 -35.58446 -34.58912 -32.36337 -30.91055 -29.57936 -28.25742 -27.64227 -25.23518 -23.99480 -23.61777 -22.21600 -21.09868 -20.68713 -19.70360 -19.38012 -18.46352 -18.20580 -18.12943 -17.66095 -16.90534 -16.86091 -16.80359 -16.52641 -15.99162 -15.73074 -15.60284 -15.30287 -14.95418 -14.68530 -14.54978 -14.47016 -14.38561 -14.01039 -13.83069 -13.71700 -13.37376 -13.16290 -12.95737 -12.91167 -12.84619 -12.77450 -12.60348 -12.50807 -11.92427 -11.81452 -11.71510 -11.55129 -11.20627 -11.16263 -11.05350 -10.41226 -10.28035 -9.78769 -8.69122 -8.35121 -6.14004 1.13970 1.22165 1.41987 1.42629 1.51647 1.56141 1.72136 2.13241 2.26700 2.29660 2.64975 2.99342 3.05946 3.13997 3.20922 3.36150 3.45937 3.54512 3.57986 3.86402 3.94378 4.00754 4.08832 4.12547 4.22915 4.29746 4.43776 4.46838 4.58726 4.60274 4.68704 4.72991 4.82127 4.93470 5.00285 5.03708 5.24369 5.29725 5.41945 6.19755 6.24496 6.31420 6.94655 7.05832 7.06462 8.74435 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.001846 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.901054 B =15165.323968 C =15461.906779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.117 4.117 11 C 0.545 3.455 12 O -0.569 6.569 13 N -0.615 5.615 14 C 0.088 3.912 15 C -0.120 4.120 16 C 0.144 3.856 17 H 0.104 0.896 18 N -0.702 5.702 19 C 0.560 3.440 20 O -0.561 6.561 21 C -0.246 4.246 22 C 0.307 3.693 23 F -0.206 7.206 24 F -0.199 7.199 25 C -0.117 4.117 26 C -0.129 4.129 27 C 0.097 3.903 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.418 0.582 36 H 0.149 0.851 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.048 0.952 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.077 -26.504 -6.749 31.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.690 4.690 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.268 4.268 11 C 0.333 3.667 12 O -0.448 6.448 13 N -0.351 5.351 14 C -0.034 4.034 15 C -0.158 4.158 16 C 0.038 3.962 17 H 0.122 0.878 18 N -0.355 5.355 19 C 0.346 3.654 20 O -0.439 6.439 21 C -0.251 4.251 22 C 0.253 3.747 23 F -0.187 7.187 24 F -0.180 7.180 25 C -0.154 4.154 26 C -0.166 4.166 27 C -0.028 4.028 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.256 0.744 36 H 0.166 0.834 37 H 0.125 0.875 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.123 0.877 41 H 0.066 0.934 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.971 -26.739 -5.927 30.746 hybrid contribution 1.150 1.213 -0.135 1.677 sum 15.121 -25.527 -6.062 30.282 Atomic orbital electron populations 1.70199 1.08049 1.28560 1.48097 1.26167 0.95981 1.03434 0.93761 0.84877 0.78703 0.76180 0.78007 1.17753 1.19949 1.20100 1.23217 0.95377 0.91669 1.58716 0.89644 1.85671 1.10733 0.99503 1.97051 1.23289 1.03365 0.93408 1.06747 1.19892 0.85398 0.86102 0.75285 1.90698 1.17369 1.85806 1.50902 1.48345 1.08413 1.04839 1.73461 1.22734 0.77193 1.00276 1.03171 1.23127 0.99565 0.90596 1.02515 1.21879 0.93327 0.84536 0.96461 0.87761 1.45752 1.67983 1.08353 1.13401 1.19303 0.75525 0.83435 0.87098 1.90751 1.50578 1.85072 1.17506 1.22615 1.02068 0.97981 1.02400 1.21176 0.78784 0.92867 0.81840 1.93019 1.50856 1.85689 1.89146 1.92994 1.86284 1.79625 1.59077 1.23262 0.88553 1.00325 1.03264 1.23119 1.00630 0.92263 1.00623 1.22320 0.98530 0.80438 1.01500 0.92017 0.87342 0.86869 0.88357 0.89399 0.87798 0.85544 0.74356 0.83372 0.87533 0.84735 0.85975 0.87652 0.93392 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 2 C 0.01 0.63 5.49 84.86 0.47 1.09 16 3 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 6 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.56 9.50 67.95 0.65 -29.92 16 8 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.16 -8.72 20.57 -56.49 -1.16 -9.88 16 10 C -0.12 -4.60 5.16 71.24 0.37 -4.23 16 11 C 0.54 20.77 7.87 87.66 0.69 21.46 16 12 O -0.57 -27.60 16.19 -3.04 -0.05 -27.65 16 13 N -0.62 -16.14 3.33 -811.77 -2.70 -18.84 16 14 C 0.09 1.31 6.69 86.86 0.58 1.89 16 15 C -0.12 -0.93 6.72 31.99 0.21 -0.71 16 16 C 0.14 2.03 3.30 46.18 0.15 2.18 16 17 H 0.10 1.72 7.55 -2.39 -0.02 1.70 16 18 N -0.70 -7.72 5.02 -436.89 -2.19 -9.92 16 19 C 0.56 9.21 7.39 87.66 0.65 9.86 16 20 O -0.56 -14.23 15.90 -3.04 -0.05 -14.28 16 21 C -0.25 -2.93 2.36 -52.93 -0.13 -3.05 16 22 C 0.31 2.61 5.27 71.98 0.38 2.99 16 23 F -0.21 -2.68 17.29 44.97 0.78 -1.91 16 24 F -0.20 -2.10 15.91 44.97 0.72 -1.39 16 25 C -0.12 -1.22 9.63 30.62 0.29 -0.92 16 26 C -0.13 -1.58 9.69 30.62 0.30 -1.29 16 27 C 0.10 2.27 6.64 86.73 0.58 2.85 16 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 30 H 0.11 3.89 7.85 -2.40 -0.02 3.87 16 31 H 0.10 1.31 7.49 -2.39 -0.02 1.29 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 0.48 8.01 -2.39 -0.02 0.46 16 34 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.42 1.68 6.87 -92.71 -0.64 1.04 16 36 H 0.15 0.16 6.39 -2.39 -0.02 0.15 16 37 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.13 0.99 7.22 -2.39 -0.02 0.97 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.11 1.61 7.67 -2.38 -0.02 1.60 16 41 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.06 1.59 8.03 -2.39 -0.02 1.57 16 Total: -1.00 -85.83 376.05 3.27 -82.55 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.43 Total: 9.73 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.19 Total: 2.20 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -4.60 Total: -84.44 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.10 Total: -41.93 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 1.49 Total: -3.30 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -85.83 3.27 -82.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294747748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.423 kcal (2) G-P(sol) polarization free energy of solvation -85.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds