Wall clock time and date at job start Wed Apr 1 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38191 * 126.45418 * 318.38005 * 3 2 1 5 5 N 1.34428 * 108.38006 * 179.97438 * 4 3 2 6 6 H 0.97004 * 125.40359 * 180.02562 * 5 4 3 7 7 C 1.37750 * 109.19019 * 359.97438 * 5 4 3 8 8 C 1.46799 * 125.84586 * 179.97438 * 7 5 4 9 9 O 1.21678 * 119.99642 * 173.14493 * 8 7 5 10 10 N 1.34777 * 120.00202 * 353.14213 * 8 7 5 11 11 C 1.47472 * 125.62865 * 354.44079 * 10 8 7 12 12 C 1.54909 * 104.80961 * 204.04604 * 11 10 8 13 13 C 1.55152 * 101.61665 * 323.04233 * 12 11 10 14 14 H 1.09007 * 110.72159 * 277.12096 * 13 12 11 15 15 N 1.46495 * 110.72090 * 154.02617 * 13 12 11 16 16 C 1.34778 * 120.00492 * 154.99704 * 15 13 12 17 17 O 1.21287 * 119.99412 * 0.02562 * 16 15 13 18 18 C 1.50693 * 120.00400 * 179.97438 * 16 15 13 19 19 S 1.80998 * 109.47310 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00480 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99552 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00576 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00272 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46974 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47121 * 120.00194 * 24 22 20 27 27 H 1.48502 * 109.46983 * 240.00267 * 24 22 20 28 28 C 1.47019 * 125.65097 * 174.41034 * 10 8 7 29 29 C 1.36401 * 108.30392 * 0.26508 * 7 5 4 30 30 H 1.07989 * 125.81062 * 0.02562 * 4 3 2 31 31 H 1.09001 * 110.34753 * 85.22543 * 11 10 8 32 32 H 1.09001 * 110.40530 * 322.89044 * 11 10 8 33 33 H 1.09007 * 111.00006 * 204.94510 * 12 11 10 34 34 H 1.09000 * 111.00440 * 81.13469 * 12 11 10 35 35 H 0.97002 * 119.99898 * 334.99722 * 15 13 12 36 36 H 1.09001 * 109.47445 * 300.00041 * 18 16 15 37 37 H 1.09002 * 109.47224 * 60.00341 * 18 16 15 38 38 H 0.96997 * 120.00177 * 179.97438 * 23 22 20 39 39 H 1.09003 * 109.88177 * 59.57981 * 28 10 8 40 40 H 1.08997 * 109.88211 * 298.41864 * 28 10 8 41 41 H 1.07999 * 126.48335 * 179.73558 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3895 -0.8299 0.7383 5 7 4.6673 -0.5179 0.4608 6 1 5.4470 -0.9495 0.8439 7 6 4.6936 0.5110 -0.4546 8 6 5.8998 1.1365 -1.0103 9 8 5.8034 1.9542 -1.9063 10 7 7.1140 0.8052 -0.5282 11 6 7.3686 -0.0772 0.6257 12 6 8.7673 0.3416 1.1434 13 6 9.5113 0.6513 -0.1824 14 1 9.8997 -0.2638 -0.6296 15 7 10.5915 1.6150 0.0423 16 6 11.6484 1.6498 -0.7933 17 8 11.7049 0.8835 -1.7317 18 6 12.7592 2.6416 -0.5624 19 16 14.0225 2.4416 -1.8431 20 6 15.1650 3.6863 -1.3431 21 1 14.9594 4.2890 -0.4708 22 6 16.3297 3.8916 -2.0696 23 7 16.5805 3.1567 -3.1325 24 14 17.5412 5.2107 -1.5391 25 1 17.0296 5.8924 -0.3230 26 1 18.8547 4.5854 -1.2411 27 1 17.7020 6.2034 -2.6317 28 6 8.4036 1.2631 -1.0657 29 6 3.4071 0.8534 -0.7514 30 1 3.0608 -1.5993 1.4211 31 1 7.3775 -1.1205 0.3102 32 1 6.6155 0.0801 1.3979 33 1 9.2471 -0.4779 1.6786 34 1 8.7015 1.2301 1.7713 35 1 10.5460 2.2282 0.7926 36 1 12.3571 3.6539 -0.6042 37 1 13.2039 2.4674 0.4174 38 1 17.3942 3.3004 -3.6404 39 1 8.4564 2.3511 -1.0261 40 1 8.5187 0.9215 -2.0943 41 1 3.0899 1.6284 -1.4335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295016060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:58 Heat of formation + Delta-G solvation = 19.565709 kcal Electronic energy + Delta-G solvation = -26042.865120 eV Core-core repulsion = 22050.527543 eV Total energy + Delta-G solvation = -3992.337576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27352 -40.35685 -39.16190 -37.68350 -36.78322 -34.42609 -32.47458 -32.24493 -31.48065 -30.32672 -29.74225 -28.10590 -25.54845 -24.83155 -23.54083 -22.38575 -21.55856 -20.88661 -20.50214 -18.93235 -17.89800 -17.33816 -17.05991 -16.64628 -16.31190 -15.93116 -15.78088 -15.16948 -14.93687 -14.84488 -14.47462 -14.39424 -14.05065 -13.86515 -13.78308 -13.53105 -13.44964 -13.29726 -13.17661 -12.89802 -12.71047 -12.45999 -12.40770 -12.30553 -11.80817 -11.40099 -11.10516 -11.06939 -10.80040 -10.60908 -9.86140 -9.74478 -9.59132 -9.30053 -9.18373 -9.10631 -8.94579 -8.30020 -6.55907 -6.26440 -3.97583 0.81479 1.24137 2.12152 2.32955 2.41443 2.75077 2.89148 2.93693 3.18594 3.22177 3.24474 3.28650 3.56702 3.62295 3.79574 3.91451 4.15619 4.21208 4.29855 4.34551 4.55961 4.62495 4.66697 4.81135 4.98555 5.05250 5.09228 5.23282 5.28062 5.31264 5.48812 5.59786 5.61049 5.75971 5.79603 5.82023 6.02786 6.05215 6.39224 6.48514 6.89607 7.23219 7.48020 7.55603 7.61900 8.30684 8.42015 9.19298 10.81046 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.001590 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.536813 B =17610.955242 C =17876.366048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.289 3.711 3 C -0.132 4.132 4 C 0.093 3.907 5 N -0.528 5.528 6 H 0.426 0.574 7 C -0.043 4.043 8 C 0.603 3.397 9 O -0.515 6.515 10 N -0.619 5.619 11 C 0.085 3.915 12 C -0.137 4.137 13 C 0.139 3.861 14 H 0.110 0.890 15 N -0.730 5.730 16 C 0.535 3.465 17 O -0.512 6.512 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.095 3.905 29 C -0.055 4.055 30 H 0.189 0.811 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.402 0.598 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.268 0.732 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.705 -9.841 14.595 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.051 4.051 5 N -0.127 5.127 6 H 0.270 0.730 7 C -0.154 4.154 8 C 0.391 3.609 9 O -0.389 6.389 10 N -0.354 5.354 11 C -0.039 4.039 12 C -0.176 4.176 13 C 0.032 3.968 14 H 0.128 0.872 15 N -0.385 5.385 16 C 0.321 3.679 17 O -0.385 6.385 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.092 0.908 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 C -0.028 4.028 29 C -0.082 4.082 30 H 0.206 0.794 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.236 0.764 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.129 -10.712 12.352 29.147 hybrid contribution 1.474 1.766 2.015 3.058 sum -22.656 -8.947 14.367 28.279 Atomic orbital electron populations 1.81298 1.11801 1.08685 1.09126 1.24625 0.91411 0.93352 0.93227 1.15399 0.85105 1.05316 1.08444 1.22340 0.82446 1.00044 1.00301 1.42462 1.08519 1.28156 1.33577 0.72960 1.19980 0.95219 0.98027 1.02171 1.16638 0.80403 0.81592 0.82222 1.90918 1.85249 1.32929 1.29826 1.48313 1.05779 1.49201 1.32085 1.22572 0.98109 0.94909 0.88297 1.23077 0.93589 1.03583 0.97312 1.21819 0.86617 0.93779 0.94613 0.87172 1.45947 1.20907 1.39290 1.32324 1.20415 0.81963 0.84057 0.81465 1.90722 1.77964 1.40546 1.29260 1.23535 0.99507 1.00301 1.07139 1.85419 1.16023 1.49219 1.32604 1.22898 1.07414 1.21846 1.16287 0.90837 1.24991 0.97333 0.96667 0.94542 1.70021 1.25795 1.38189 1.16218 0.86113 0.80161 0.80578 0.78623 1.19612 1.20552 1.20534 1.22521 0.80695 1.00785 0.98838 1.21086 0.89130 0.99048 0.98931 0.79373 0.90277 0.90234 0.88389 0.89399 0.76364 0.89035 0.89064 0.92182 0.90208 0.89961 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.65 18.54 41.84 0.78 -3.87 16 2 C 0.29 2.34 15.83 -22.47 -0.36 1.98 16 3 C -0.13 -0.76 5.97 -106.83 -0.64 -1.40 16 4 C 0.09 0.23 11.90 -16.43 -0.20 0.04 16 5 N -0.53 -1.48 5.28 -9.27 -0.05 -1.53 16 6 H 0.43 0.06 5.28 -40.82 -0.22 -0.15 16 7 C -0.04 -0.29 6.76 -82.41 -0.56 -0.85 16 8 C 0.60 5.87 7.81 -12.80 -0.10 5.77 16 9 O -0.51 -7.27 17.20 5.21 0.09 -7.18 16 10 N -0.62 -4.75 3.33 -171.98 -0.57 -5.32 16 11 C 0.08 0.27 5.23 -2.50 -0.01 0.26 16 12 C -0.14 -0.53 6.71 -24.59 -0.16 -0.70 16 13 C 0.14 1.17 3.31 -66.10 -0.22 0.95 16 14 H 0.11 1.09 7.55 -51.92 -0.39 0.70 16 15 N -0.73 -7.67 5.11 -52.04 -0.27 -7.93 16 16 C 0.53 8.76 7.85 -10.99 -0.09 8.68 16 17 O -0.51 -10.49 15.51 5.55 0.09 -10.40 16 18 C -0.15 -2.85 6.16 36.00 0.22 -2.63 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.54 -14.83 9.50 30.94 0.29 -14.54 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 24 Si 0.92 20.94 29.55 -169.99 -5.02 15.92 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.10 0.94 6.63 -3.07 -0.02 0.92 16 29 C -0.05 -0.39 10.54 -39.09 -0.41 -0.80 16 30 H 0.19 -0.22 8.06 -52.49 -0.42 -0.65 16 31 H 0.08 0.11 7.82 -51.93 -0.41 -0.30 16 32 H 0.08 0.08 6.22 -51.93 -0.32 -0.25 16 33 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.29 8.01 -51.93 -0.42 -0.12 16 35 H 0.40 3.06 8.56 -40.82 -0.35 2.71 16 36 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 37 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -38.95 375.59 -7.72 -46.67 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -4.60 Total: -3.01 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.34 Total: -0.35 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.62 Total: -43.55 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.18 Total: -17.59 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.95 -7.72 -46.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295016060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.235 kcal (2) G-P(sol) polarization free energy of solvation -38.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds