Wall clock time and date at job start Wed Apr 1 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38191 * 126.45418 * 318.38005 * 3 2 1 5 5 N 1.34428 * 108.38006 * 179.97438 * 4 3 2 6 6 H 0.97004 * 125.40359 * 180.02562 * 5 4 3 7 7 C 1.37750 * 109.19019 * 359.97438 * 5 4 3 8 8 C 1.46799 * 125.84586 * 179.97438 * 7 5 4 9 9 O 1.21678 * 119.99642 * 173.14493 * 8 7 5 10 10 N 1.34777 * 120.00202 * 353.14213 * 8 7 5 11 11 C 1.47472 * 125.62865 * 354.44079 * 10 8 7 12 12 C 1.54909 * 104.80961 * 204.04604 * 11 10 8 13 13 C 1.55152 * 101.61665 * 323.04233 * 12 11 10 14 14 H 1.09007 * 110.72159 * 277.12096 * 13 12 11 15 15 N 1.46495 * 110.72090 * 154.02617 * 13 12 11 16 16 C 1.34778 * 120.00492 * 154.99704 * 15 13 12 17 17 O 1.21287 * 119.99412 * 0.02562 * 16 15 13 18 18 C 1.50693 * 120.00400 * 179.97438 * 16 15 13 19 19 S 1.80998 * 109.47310 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00480 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99552 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00576 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00272 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46974 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47121 * 120.00194 * 24 22 20 27 27 H 1.48502 * 109.46983 * 240.00267 * 24 22 20 28 28 C 1.47019 * 125.65097 * 174.41034 * 10 8 7 29 29 C 1.36401 * 108.30392 * 0.26508 * 7 5 4 30 30 H 1.07989 * 125.81062 * 0.02562 * 4 3 2 31 31 H 1.09001 * 110.34753 * 85.22543 * 11 10 8 32 32 H 1.09001 * 110.40530 * 322.89044 * 11 10 8 33 33 H 1.09007 * 111.00006 * 204.94510 * 12 11 10 34 34 H 1.09000 * 111.00440 * 81.13469 * 12 11 10 35 35 H 0.97002 * 119.99898 * 334.99722 * 15 13 12 36 36 H 1.09001 * 109.47445 * 300.00041 * 18 16 15 37 37 H 1.09002 * 109.47224 * 60.00341 * 18 16 15 38 38 H 0.96997 * 120.00177 * 179.97438 * 23 22 20 39 39 H 1.09003 * 109.88177 * 59.57981 * 28 10 8 40 40 H 1.08997 * 109.88211 * 298.41864 * 28 10 8 41 41 H 1.07999 * 126.48335 * 179.73558 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3895 -0.8299 0.7383 5 7 4.6673 -0.5179 0.4608 6 1 5.4470 -0.9495 0.8439 7 6 4.6936 0.5110 -0.4546 8 6 5.8998 1.1365 -1.0103 9 8 5.8034 1.9542 -1.9063 10 7 7.1140 0.8052 -0.5282 11 6 7.3686 -0.0772 0.6257 12 6 8.7673 0.3416 1.1434 13 6 9.5113 0.6513 -0.1824 14 1 9.8997 -0.2638 -0.6296 15 7 10.5915 1.6150 0.0423 16 6 11.6484 1.6498 -0.7933 17 8 11.7049 0.8835 -1.7317 18 6 12.7592 2.6416 -0.5624 19 16 14.0225 2.4416 -1.8431 20 6 15.1650 3.6863 -1.3431 21 1 14.9594 4.2890 -0.4708 22 6 16.3297 3.8916 -2.0696 23 7 16.5805 3.1567 -3.1325 24 14 17.5412 5.2107 -1.5391 25 1 17.0296 5.8924 -0.3230 26 1 18.8547 4.5854 -1.2411 27 1 17.7020 6.2034 -2.6317 28 6 8.4036 1.2631 -1.0657 29 6 3.4071 0.8534 -0.7514 30 1 3.0608 -1.5993 1.4211 31 1 7.3775 -1.1205 0.3102 32 1 6.6155 0.0801 1.3979 33 1 9.2471 -0.4779 1.6786 34 1 8.7015 1.2301 1.7713 35 1 10.5460 2.2282 0.7926 36 1 12.3571 3.6539 -0.6042 37 1 13.2039 2.4674 0.4174 38 1 17.3942 3.3004 -3.6404 39 1 8.4564 2.3511 -1.0261 40 1 8.5187 0.9215 -2.0943 41 1 3.0899 1.6284 -1.4335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295016060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:57 Heat of formation + Delta-G solvation = -10.291489 kcal Electronic energy + Delta-G solvation = -26044.159825 eV Core-core repulsion = 22050.527543 eV Total energy + Delta-G solvation = -3993.632281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.72083 -41.16219 -40.20286 -38.52623 -37.44819 -35.42949 -34.57630 -32.80457 -32.24323 -30.81075 -30.76373 -29.02950 -27.64627 -25.45838 -24.01186 -22.84168 -22.38110 -21.61046 -21.32765 -19.89482 -19.41701 -18.13813 -17.67219 -17.52600 -17.13814 -16.88420 -16.84345 -16.52703 -16.20081 -15.92823 -15.51078 -15.02734 -14.89497 -14.72265 -14.54880 -14.43524 -14.36087 -14.09826 -14.03927 -13.81411 -13.70112 -13.41847 -13.15205 -13.03882 -12.91979 -12.87944 -12.69674 -12.56586 -11.90671 -11.69547 -11.41588 -11.15340 -10.98544 -10.26493 -10.25457 -10.20417 -9.91666 -9.38400 -8.65357 -8.34376 -6.11830 0.35061 0.75085 1.26158 1.41818 1.44015 1.52051 1.58613 1.64108 1.80934 1.97359 2.11719 2.27260 2.34889 2.66559 3.00326 3.10775 3.29781 3.36576 3.39941 3.70937 3.95285 4.02046 4.09282 4.16405 4.18299 4.22142 4.32909 4.36633 4.53581 4.55900 4.68608 4.73056 4.86430 4.94559 5.01829 5.11988 5.32483 5.43064 5.44721 5.56129 6.20649 6.25315 6.32572 6.47284 6.65344 6.91940 7.07648 7.22281 8.74990 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.001590 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.536813 B =17610.955242 C =17876.366048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.314 3.686 3 C -0.161 4.161 4 C 0.147 3.853 5 N -0.508 5.508 6 H 0.443 0.557 7 C -0.056 4.056 8 C 0.597 3.403 9 O -0.576 6.576 10 N -0.614 5.614 11 C 0.077 3.923 12 C -0.121 4.121 13 C 0.136 3.864 14 H 0.097 0.903 15 N -0.702 5.702 16 C 0.537 3.463 17 O -0.561 6.561 18 C -0.131 4.131 19 S -0.153 6.153 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.997 3.003 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.277 1.277 28 C 0.097 3.903 29 C -0.063 4.063 30 H 0.240 0.760 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.420 0.580 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.271 0.729 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.207 -10.883 18.979 31.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C 0.000 4.000 3 C -0.171 4.171 4 C 0.000 4.000 5 N -0.108 5.108 6 H 0.291 0.709 7 C -0.167 4.167 8 C 0.388 3.612 9 O -0.456 6.456 10 N -0.348 5.348 11 C -0.044 4.044 12 C -0.159 4.159 13 C 0.030 3.970 14 H 0.115 0.885 15 N -0.357 5.357 16 C 0.323 3.677 17 O -0.438 6.438 18 C -0.282 4.282 19 S 0.074 5.926 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.202 1.202 28 C -0.028 4.028 29 C -0.091 4.091 30 H 0.257 0.743 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.258 0.742 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.636 -11.774 16.829 32.075 hybrid contribution 1.525 2.035 0.708 2.640 sum -23.111 -9.738 17.538 30.603 Atomic orbital electron populations 1.81319 1.13400 1.10697 1.11227 1.24874 0.91669 0.91773 0.91638 1.15408 0.84058 1.07099 1.10507 1.23047 0.81147 0.98109 0.97658 1.42385 1.09503 1.26737 1.32182 0.70926 1.19364 0.93403 0.99852 1.04124 1.17073 0.81551 0.80979 0.81557 1.90880 1.86238 1.35817 1.32651 1.48320 1.04275 1.49256 1.32917 1.23007 0.98645 0.95410 0.87363 1.23121 0.92861 1.05324 0.94591 1.21949 0.85378 0.92169 0.97526 0.88505 1.45634 1.19448 1.39407 1.31169 1.20080 0.82822 0.83141 0.81625 1.90715 1.79163 1.42396 1.31535 1.23382 0.97935 1.01976 1.04935 1.85591 1.19519 1.50012 1.37452 1.23243 1.07722 1.21822 1.16503 0.89833 1.26101 0.99481 0.99100 0.94403 1.70186 1.26610 1.40282 1.17739 0.84926 0.77289 0.77244 0.78621 1.17941 1.19897 1.20209 1.22286 0.82809 0.99751 0.97925 1.21084 0.89994 0.99113 0.98936 0.74348 0.87482 0.86875 0.85543 0.87959 0.74159 0.87417 0.86683 0.92040 0.92041 0.93266 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.44 18.54 19.00 0.35 -10.09 16 2 C 0.31 4.76 15.83 88.33 1.40 6.16 16 3 C -0.16 -1.49 5.97 -21.30 -0.13 -1.61 16 4 C 0.15 -0.02 11.90 84.28 1.00 0.98 16 5 N -0.51 -0.49 5.28 -183.25 -0.97 -1.45 16 6 H 0.44 -2.54 5.28 -92.71 -0.49 -3.03 16 7 C -0.06 -0.66 6.76 40.02 0.27 -0.39 16 8 C 0.60 11.61 7.81 86.48 0.68 12.29 16 9 O -0.58 -17.58 17.20 -4.28 -0.07 -17.65 16 10 N -0.61 -8.63 3.33 -816.25 -2.72 -11.35 16 11 C 0.08 0.15 5.23 86.85 0.45 0.60 16 12 C -0.12 -0.39 6.71 31.98 0.21 -0.18 16 13 C 0.14 2.08 3.31 46.18 0.15 2.23 16 14 H 0.10 1.84 7.55 -2.38 -0.02 1.82 16 15 N -0.70 -13.55 5.11 -436.93 -2.23 -15.79 16 16 C 0.54 17.51 7.85 87.65 0.69 18.19 16 17 O -0.56 -23.80 15.51 -3.05 -0.05 -23.85 16 18 C -0.13 -4.77 6.16 71.23 0.44 -4.34 16 19 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 20 C -0.55 -30.37 9.50 67.95 0.65 -29.72 16 21 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 22 C 0.01 0.78 5.49 84.86 0.47 1.24 16 23 N -0.91 -55.31 13.22 21.65 0.29 -55.02 16 24 Si 1.00 42.84 29.55 68.60 2.03 44.87 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 28 C 0.10 1.96 6.63 86.73 0.58 2.53 16 29 C -0.06 -0.87 10.54 22.59 0.24 -0.63 16 30 H 0.24 -2.36 8.06 -2.92 -0.02 -2.39 16 31 H 0.11 -0.29 7.82 -2.39 -0.02 -0.31 16 32 H 0.11 -0.48 6.22 -2.39 -0.01 -0.49 16 33 H 0.13 -0.15 8.14 -2.38 -0.02 -0.17 16 34 H 0.10 0.13 8.01 -2.39 -0.02 0.11 16 35 H 0.42 5.10 8.56 -92.71 -0.79 4.31 16 36 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 37 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.06 1.45 8.03 -2.39 -0.02 1.43 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -95.03 375.59 2.39 -92.65 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -0.17 Total: -0.30 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 7.09 Total: 7.35 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -5.28 Total: -93.70 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -0.12 Total: -41.50 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -95.03 2.39 -92.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295016060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.355 kcal (2) G-P(sol) polarization free energy of solvation -95.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds