Wall clock time and date at job start Wed Apr 1 2020 05:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36355 * 125.84804 * 27.62782 * 3 2 1 5 5 C 1.41421 * 107.01594 * 180.13426 * 4 3 2 6 6 C 1.47378 * 126.47166 * 179.83954 * 5 4 3 7 7 O 1.21623 * 119.99580 * 359.71259 * 6 5 4 8 8 N 1.34773 * 120.00463 * 179.71028 * 6 5 4 9 9 C 1.47062 * 136.05579 * 355.19322 * 8 6 5 10 10 C 1.53495 * 87.98648 * 153.13697 * 9 8 6 11 11 C 1.47063 * 136.05859 * 175.55949 * 8 6 5 12 12 H 1.09003 * 113.46883 * 92.02488 * 11 8 6 13 13 C 1.53000 * 113.46803 * 321.64656 * 11 8 6 14 14 N 1.46506 * 109.47267 * 175.88147 * 13 11 8 15 15 C 1.34767 * 119.99961 * 180.48396 * 14 13 11 16 16 O 1.21280 * 120.00229 * 0.02562 * 15 14 13 17 17 C 1.50709 * 120.00021 * 180.02562 * 15 14 13 18 18 S 1.80994 * 109.47150 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99823 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99484 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99774 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00259 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46993 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47405 * 120.00075 * 23 21 19 26 26 H 1.48501 * 109.47291 * 240.00376 * 23 21 19 27 27 C 1.38127 * 107.06615 * 359.57110 * 5 4 3 28 28 N 1.34437 * 108.38480 * 0.26698 * 27 5 4 29 29 H 0.96994 * 125.38615 * 180.02562 * 28 27 5 30 30 H 1.08001 * 126.48803 * 359.97267 * 4 3 2 31 31 H 1.09000 * 113.46779 * 267.91627 * 9 8 6 32 32 H 1.08999 * 113.47099 * 38.35261 * 9 8 6 33 33 H 1.09003 * 114.20673 * 272.48169 * 10 9 8 34 34 H 1.08994 * 114.39004 * 139.66866 * 10 9 8 35 35 H 1.09000 * 109.47276 * 295.88490 * 13 11 8 36 36 H 1.09004 * 109.47384 * 55.88507 * 13 11 8 37 37 H 0.97002 * 119.99709 * 0.48490 * 14 13 11 38 38 H 1.08998 * 109.46797 * 300.00462 * 17 15 14 39 39 H 1.09005 * 109.46801 * 60.00062 * 17 15 14 40 40 H 0.97005 * 119.99992 * 179.97438 * 22 21 19 41 41 H 1.08002 * 125.80914 * 180.22662 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3670 -0.9782 -0.5125 5 6 4.7053 -0.5747 -0.2980 6 6 5.9173 -1.3195 -0.6831 7 8 5.8181 -2.3964 -1.2394 8 7 7.1356 -0.8072 -0.4189 9 6 7.6577 0.4513 0.1347 10 6 8.8923 -0.3306 0.6043 11 6 8.5279 -1.2580 -0.5633 12 1 8.9831 -0.9654 -1.5095 13 6 8.7238 -2.7420 -0.2467 14 7 10.1146 -3.1185 -0.5119 15 6 10.5186 -4.3886 -0.3124 16 8 9.7308 -5.2201 0.0863 17 6 11.9495 -4.7758 -0.5846 18 16 12.1774 -6.5349 -0.2246 19 6 13.8863 -6.7086 -0.6175 20 1 14.4501 -5.8552 -0.9640 21 6 14.5076 -7.9423 -0.4817 22 7 13.8202 -8.9826 -0.0599 23 14 16.3190 -8.1267 -0.8990 24 1 16.8593 -6.8182 -1.3477 25 1 17.0606 -8.5813 0.3047 26 1 16.4776 -9.1269 -1.9851 27 6 4.6622 0.6522 0.3350 28 7 3.3739 0.9932 0.5117 29 1 3.0615 1.8093 0.9326 30 1 3.0397 -1.8903 -0.9894 31 1 7.8814 1.2000 -0.6252 32 1 7.0574 0.8475 0.9536 33 1 8.7845 -0.7873 1.5882 34 1 9.8361 0.1993 0.4764 35 1 8.4921 -2.9233 0.8028 36 1 8.0603 -3.3379 -0.8735 37 1 10.7446 -2.4536 -0.8311 38 1 12.1841 -4.5863 -1.6320 39 1 12.6122 -4.1861 0.0487 40 1 14.2544 -9.8449 0.0347 41 1 5.5179 1.2377 0.6373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298985203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:36 Heat of formation + Delta-G solvation = 53.882832 kcal Electronic energy + Delta-G solvation = -25831.244320 eV Core-core repulsion = 21840.394846 eV Total energy + Delta-G solvation = -3990.849474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.15197 -40.75411 -38.94141 -37.91385 -36.99086 -34.42080 -32.40309 -32.21674 -31.11713 -30.00841 -29.51557 -27.67963 -25.45894 -24.09301 -23.76576 -22.85374 -21.36440 -20.68702 -20.41042 -18.85778 -17.85113 -17.18731 -16.84363 -16.37075 -16.25485 -15.66743 -15.49924 -15.18011 -14.98913 -14.80630 -14.78065 -14.26349 -13.97215 -13.84830 -13.63287 -13.53249 -13.42201 -13.25514 -13.02622 -12.99030 -12.70311 -12.52425 -12.35441 -11.92074 -11.68537 -11.05482 -10.99534 -10.98240 -10.72805 -10.15960 -9.78730 -9.78076 -9.36942 -9.14161 -9.05328 -8.98891 -8.83408 -8.19076 -6.46655 -6.19080 -3.89378 0.74563 1.28553 1.66899 2.28006 2.53968 2.81116 3.08894 3.15881 3.16119 3.23322 3.30700 3.35507 3.41429 3.79986 3.82273 4.07437 4.12695 4.22678 4.42030 4.52854 4.57062 4.74046 4.79829 4.84464 4.92502 5.16068 5.21264 5.29342 5.32702 5.43474 5.56525 5.67992 5.79021 5.87331 5.93528 5.97594 6.08082 6.16667 6.45817 6.62121 6.86897 7.35797 7.62165 7.72954 7.93595 8.37851 8.66888 9.26207 10.88378 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.028798 B = 0.001603 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.041367 B =17462.883229 C =18209.450313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.278 3.722 3 C 0.046 3.954 4 C -0.046 4.046 5 C -0.215 4.215 6 C 0.615 3.385 7 O -0.524 6.524 8 N -0.641 5.641 9 C 0.094 3.906 10 C -0.151 4.151 11 C 0.127 3.873 12 H 0.101 0.899 13 C 0.115 3.885 14 N -0.736 5.736 15 C 0.532 3.468 16 O -0.514 6.514 17 C -0.152 4.152 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.077 3.923 28 N -0.520 5.520 29 H 0.427 0.573 30 H 0.163 0.837 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.397 0.603 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.084 30.388 1.853 33.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.038 4.038 3 C -0.066 4.066 4 C -0.074 4.074 5 C -0.225 4.225 6 C 0.406 3.594 7 O -0.400 6.400 8 N -0.378 5.378 9 C -0.028 4.028 10 C -0.189 4.189 11 C 0.024 3.976 12 H 0.118 0.882 13 C -0.010 4.010 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.387 6.387 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.064 4.064 28 N -0.114 5.114 29 H 0.265 0.735 30 H 0.181 0.819 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -18.582 28.235 2.280 33.877 hybrid contribution 2.646 1.672 -0.710 3.210 sum -15.935 29.906 1.571 33.923 Atomic orbital electron populations 1.81354 1.11212 1.06165 1.08984 1.24250 0.90755 0.94885 0.93921 1.15158 0.83388 0.94474 1.13540 1.21150 0.90187 0.98098 0.98001 1.19508 0.93537 0.97418 1.12058 1.16861 0.80291 0.84629 0.77625 1.90875 1.85620 1.21737 1.41744 1.49459 1.04204 1.19095 1.65040 1.23122 0.93617 0.88435 0.97665 1.23599 0.98396 0.97674 0.99238 1.22852 0.80468 0.95148 0.99155 0.88164 1.21432 0.83982 0.93315 1.02257 1.45826 1.11114 1.11318 1.70928 1.20297 0.89986 0.81244 0.76738 1.90725 1.55080 1.49312 1.43592 1.23520 0.94599 1.07327 1.04814 1.85459 1.13019 0.97771 1.87161 1.22912 0.95140 0.98451 1.51816 0.90871 1.24992 0.99068 0.94824 0.94725 1.70033 1.36311 1.00520 1.43388 0.86121 0.82921 0.78277 0.78175 1.19627 1.20605 1.20589 1.22896 0.86229 0.97064 1.00251 1.41614 1.05692 1.18427 1.45632 0.73451 0.81925 0.89141 0.90175 0.88033 0.88619 0.91122 0.89851 0.76946 0.89205 0.89198 0.92250 0.79340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -3.92 18.54 41.84 0.78 -3.15 16 2 C 0.28 2.04 15.88 -22.47 -0.36 1.68 16 3 C 0.05 0.26 6.90 -83.98 -0.58 -0.32 16 4 C -0.05 -0.34 10.59 -39.05 -0.41 -0.75 16 5 C -0.22 -1.55 6.13 -105.01 -0.64 -2.19 16 6 C 0.61 6.37 7.94 -12.54 -0.10 6.27 16 7 O -0.52 -8.01 16.51 5.26 0.09 -7.92 16 8 N -0.64 -4.71 3.56 -178.77 -0.64 -5.34 16 9 C 0.09 0.23 7.32 -8.52 -0.06 0.16 16 10 C -0.15 -0.56 8.02 -26.22 -0.21 -0.77 16 11 C 0.13 0.93 4.06 -72.41 -0.29 0.63 16 12 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 13 C 0.12 1.40 5.47 -4.04 -0.02 1.38 16 14 N -0.74 -9.46 5.56 -60.29 -0.33 -9.79 16 15 C 0.53 9.98 7.85 -10.99 -0.09 9.89 16 16 O -0.51 -12.10 15.86 5.56 0.09 -12.01 16 17 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.08 0.23 11.12 -16.45 -0.18 0.04 16 28 N -0.52 -1.24 6.02 -10.29 -0.06 -1.30 16 29 H 0.43 -0.37 8.96 -40.82 -0.37 -0.73 16 30 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 32 H 0.08 0.01 5.83 -51.93 -0.30 -0.30 16 33 H 0.10 0.47 7.95 -51.93 -0.41 0.05 16 34 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 36 H 0.08 1.34 7.15 -51.93 -0.37 0.97 16 37 H 0.40 3.57 8.47 -40.82 -0.35 3.22 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 39 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.19 -0.11 5.01 -52.49 -0.26 -0.37 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -41.47 379.29 -7.95 -49.42 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.55 Total: -2.83 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.53 Total: 0.28 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.48 Total: -45.12 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.17 Total: -19.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -41.47 -7.95 -49.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298985203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.301 kcal (2) G-P(sol) polarization free energy of solvation -41.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds