Wall clock time and date at job start Wed Apr 1 2020 05:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36355 * 125.84804 * 27.62782 * 3 2 1 5 5 C 1.41421 * 107.01594 * 180.13426 * 4 3 2 6 6 C 1.47378 * 126.47166 * 179.83954 * 5 4 3 7 7 O 1.21623 * 119.99580 * 359.71259 * 6 5 4 8 8 N 1.34773 * 120.00463 * 179.71028 * 6 5 4 9 9 C 1.47062 * 136.05579 * 355.19322 * 8 6 5 10 10 C 1.53495 * 87.98648 * 153.13697 * 9 8 6 11 11 C 1.47063 * 136.05859 * 175.55949 * 8 6 5 12 12 H 1.09003 * 113.46883 * 92.02488 * 11 8 6 13 13 C 1.53000 * 113.46803 * 321.64656 * 11 8 6 14 14 N 1.46506 * 109.47267 * 175.88147 * 13 11 8 15 15 C 1.34767 * 119.99961 * 180.48396 * 14 13 11 16 16 O 1.21280 * 120.00229 * 0.02562 * 15 14 13 17 17 C 1.50709 * 120.00021 * 180.02562 * 15 14 13 18 18 S 1.80994 * 109.47150 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99823 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99484 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99774 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00259 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46993 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47405 * 120.00075 * 23 21 19 26 26 H 1.48501 * 109.47291 * 240.00376 * 23 21 19 27 27 C 1.38127 * 107.06615 * 359.57110 * 5 4 3 28 28 N 1.34437 * 108.38480 * 0.26698 * 27 5 4 29 29 H 0.96994 * 125.38615 * 180.02562 * 28 27 5 30 30 H 1.08001 * 126.48803 * 359.97267 * 4 3 2 31 31 H 1.09000 * 113.46779 * 267.91627 * 9 8 6 32 32 H 1.08999 * 113.47099 * 38.35261 * 9 8 6 33 33 H 1.09003 * 114.20673 * 272.48169 * 10 9 8 34 34 H 1.08994 * 114.39004 * 139.66866 * 10 9 8 35 35 H 1.09000 * 109.47276 * 295.88490 * 13 11 8 36 36 H 1.09004 * 109.47384 * 55.88507 * 13 11 8 37 37 H 0.97002 * 119.99709 * 0.48490 * 14 13 11 38 38 H 1.08998 * 109.46797 * 300.00462 * 17 15 14 39 39 H 1.09005 * 109.46801 * 60.00062 * 17 15 14 40 40 H 0.97005 * 119.99992 * 179.97438 * 22 21 19 41 41 H 1.08002 * 125.80914 * 180.22662 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3670 -0.9782 -0.5125 5 6 4.7053 -0.5747 -0.2980 6 6 5.9173 -1.3195 -0.6831 7 8 5.8181 -2.3964 -1.2394 8 7 7.1356 -0.8072 -0.4189 9 6 7.6577 0.4513 0.1347 10 6 8.8923 -0.3306 0.6043 11 6 8.5279 -1.2580 -0.5633 12 1 8.9831 -0.9654 -1.5095 13 6 8.7238 -2.7420 -0.2467 14 7 10.1146 -3.1185 -0.5119 15 6 10.5186 -4.3886 -0.3124 16 8 9.7308 -5.2201 0.0863 17 6 11.9495 -4.7758 -0.5846 18 16 12.1774 -6.5349 -0.2246 19 6 13.8863 -6.7086 -0.6175 20 1 14.4501 -5.8552 -0.9640 21 6 14.5076 -7.9423 -0.4817 22 7 13.8202 -8.9826 -0.0599 23 14 16.3190 -8.1267 -0.8990 24 1 16.8593 -6.8182 -1.3477 25 1 17.0606 -8.5813 0.3047 26 1 16.4776 -9.1269 -1.9851 27 6 4.6622 0.6522 0.3350 28 7 3.3739 0.9932 0.5117 29 1 3.0615 1.8093 0.9326 30 1 3.0397 -1.8903 -0.9894 31 1 7.8814 1.2000 -0.6252 32 1 7.0574 0.8475 0.9536 33 1 8.7845 -0.7873 1.5882 34 1 9.8361 0.1993 0.4764 35 1 8.4921 -2.9233 0.8028 36 1 8.0603 -3.3379 -0.8735 37 1 10.7446 -2.4536 -0.8311 38 1 12.1841 -4.5863 -1.6320 39 1 12.6122 -4.1861 0.0487 40 1 14.2544 -9.8449 0.0347 41 1 5.5179 1.2377 0.6373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298985203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:36 Heat of formation + Delta-G solvation = 20.374347 kcal Electronic energy + Delta-G solvation = -25832.697357 eV Core-core repulsion = 21840.394846 eV Total energy + Delta-G solvation = -3992.302511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.58064 -41.35560 -40.35082 -38.67457 -37.64521 -35.71339 -34.55985 -32.74855 -31.81965 -31.21913 -29.97691 -28.71861 -27.60361 -24.65413 -24.35026 -23.34643 -21.96712 -21.71708 -21.08208 -19.94101 -19.30226 -17.96092 -17.66485 -17.53780 -16.95372 -16.85775 -16.57819 -16.42545 -16.18292 -15.81262 -15.57864 -15.31058 -15.03796 -14.79943 -14.61106 -14.45860 -14.20355 -14.08301 -13.99665 -13.76975 -13.58927 -13.47687 -13.16464 -13.13420 -12.90161 -12.79629 -12.56943 -12.29116 -11.70915 -11.50428 -11.13710 -11.00387 -10.88319 -10.28172 -10.23333 -10.12323 -9.70046 -9.41181 -8.64999 -8.32171 -6.10710 0.31095 0.74218 1.18004 1.28097 1.43951 1.47879 1.58929 1.62942 1.78618 2.06491 2.23289 2.29467 2.40946 2.55660 2.99597 3.02251 3.35588 3.42135 3.67552 3.81943 3.94549 4.02111 4.08450 4.10508 4.17681 4.35018 4.42779 4.54173 4.60189 4.69544 4.78023 4.79434 4.90850 5.09442 5.14068 5.35242 5.37243 5.44707 5.47835 5.51972 6.21641 6.22684 6.37937 6.53396 6.81366 7.09078 7.25067 7.29576 8.77434 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.028798 B = 0.001603 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.041367 B =17462.883229 C =18209.450313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.302 3.698 3 C 0.043 3.957 4 C -0.066 4.066 5 C -0.252 4.252 6 C 0.605 3.395 7 O -0.597 6.597 8 N -0.645 5.645 9 C 0.099 3.901 10 C -0.137 4.137 11 C 0.119 3.881 12 H 0.121 0.879 13 C 0.120 3.880 14 N -0.703 5.703 15 C 0.531 3.469 16 O -0.572 6.572 17 C -0.125 4.125 18 S -0.161 6.161 19 C -0.543 4.543 20 H 0.086 0.914 21 C 0.011 3.989 22 N -0.914 5.914 23 Si 1.001 2.999 24 H -0.253 1.253 25 H -0.274 1.274 26 H -0.276 1.276 27 C 0.129 3.871 28 N -0.497 5.497 29 H 0.448 0.552 30 H 0.143 0.857 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.421 0.579 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.541 35.715 2.288 37.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.013 4.013 3 C -0.069 4.069 4 C -0.094 4.094 5 C -0.261 4.261 6 C 0.398 3.602 7 O -0.479 6.479 8 N -0.380 5.380 9 C -0.022 4.022 10 C -0.175 4.175 11 C 0.015 3.985 12 H 0.138 0.862 13 C -0.005 4.005 14 N -0.358 5.358 15 C 0.316 3.684 16 O -0.450 6.450 17 C -0.276 4.276 18 S 0.066 5.934 19 C -0.690 4.690 20 H 0.105 0.895 21 C -0.193 4.193 22 N -0.550 5.550 23 Si 0.823 3.177 24 H -0.177 1.177 25 H -0.200 1.200 26 H -0.202 1.202 27 C -0.016 4.016 28 N -0.092 5.092 29 H 0.291 0.709 30 H 0.160 0.840 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.146 0.854 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.260 0.740 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.029 33.713 2.732 37.429 hybrid contribution 1.846 0.119 -0.840 2.031 sum -14.183 33.832 1.892 36.733 Atomic orbital electron populations 1.81371 1.12559 1.07810 1.10793 1.24376 0.90901 0.93463 0.92556 1.14820 0.82484 0.95204 1.14364 1.21131 0.91343 0.98238 0.98701 1.19351 0.91983 0.99597 1.15210 1.17388 0.81940 0.84044 0.76833 1.90833 1.86825 1.24948 1.45311 1.49652 1.03224 1.21140 1.64021 1.23520 0.92539 0.86871 0.99221 1.23591 1.00697 0.96358 0.96836 1.23125 0.81441 0.91785 1.02101 0.86176 1.21415 0.82106 0.96685 1.00339 1.45450 1.12005 1.09717 1.68637 1.20201 0.89172 0.82535 0.76442 1.90715 1.56265 1.51435 1.46606 1.23343 0.95976 1.01665 1.06588 1.85726 1.14323 1.05424 1.87958 1.23249 0.94902 0.99210 1.51688 0.89547 1.26165 1.04630 0.94285 0.94245 1.70210 1.38776 1.01251 1.44794 0.84874 0.75936 0.78947 0.77970 1.17672 1.19968 1.20191 1.23393 0.87172 0.94847 0.96141 1.41596 1.05079 1.18244 1.44301 0.70930 0.83951 0.85822 0.86903 0.88985 0.85382 0.92623 0.94489 0.74038 0.87006 0.86367 0.92079 0.74738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.00 18.54 19.00 0.35 -8.65 16 2 C 0.30 4.42 15.88 88.33 1.40 5.82 16 3 C 0.04 0.44 6.90 39.03 0.27 0.71 16 4 C -0.07 -1.01 10.59 22.61 0.24 -0.78 16 5 C -0.25 -3.38 6.13 -20.11 -0.12 -3.50 16 6 C 0.60 12.76 7.94 86.65 0.69 13.44 16 7 O -0.60 -20.25 16.51 -4.10 -0.07 -20.31 16 8 N -0.65 -8.11 3.56 -837.76 -2.98 -11.10 16 9 C 0.10 -0.09 7.32 83.17 0.61 0.52 16 10 C -0.14 -0.37 8.02 30.93 0.25 -0.12 16 11 C 0.12 1.46 4.06 41.78 0.17 1.63 16 12 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 13 C 0.12 2.98 5.47 86.38 0.47 3.45 16 14 N -0.70 -17.36 5.56 -463.05 -2.57 -19.93 16 15 C 0.53 20.13 7.85 87.66 0.69 20.81 16 16 O -0.57 -28.48 15.86 -3.03 -0.05 -28.52 16 17 C -0.12 -4.87 6.16 71.24 0.44 -4.43 16 18 S -0.16 -9.10 20.57 -56.49 -1.16 -10.26 16 19 C -0.54 -30.95 9.50 67.95 0.65 -30.30 16 20 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 21 C 0.01 0.64 5.49 84.86 0.47 1.10 16 22 N -0.91 -56.78 13.22 21.65 0.29 -56.49 16 23 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 24 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 27 C 0.13 0.20 11.12 84.27 0.94 1.14 16 28 N -0.50 -0.59 6.02 -186.46 -1.12 -1.71 16 29 H 0.45 -2.81 8.96 -92.71 -0.83 -3.65 16 30 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 32 H 0.11 -0.81 5.83 -2.39 -0.01 -0.83 16 33 H 0.09 0.50 7.95 -2.39 -0.02 0.48 16 34 H 0.13 -0.37 8.14 -2.39 -0.02 -0.38 16 35 H 0.06 1.55 7.89 -2.39 -0.02 1.53 16 36 H 0.04 1.30 7.15 -2.38 -0.02 1.28 16 37 H 0.42 6.26 8.47 -92.71 -0.79 5.48 16 38 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 39 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 40 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 41 H 0.24 -1.96 5.01 -2.91 -0.01 -1.98 16 Total: -1.00 -102.75 379.29 1.37 -101.38 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -0.49 Total: 0.58 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 7.15 Total: 9.50 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -6.04 Total: -97.88 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.12 Total: -48.84 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.16 Total: -10.26 kcal Total: -102.75 1.37 -101.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298985203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.755 kcal (2) G-P(sol) polarization free energy of solvation -102.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds