Wall clock time and date at job start Wed Apr 1 2020 05:34:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31631 * 1
3 3 Si 1.86805 * 120.00212 * 2 1
4 4 H 1.48498 * 109.46913 * 269.99878 * 3 2 1
5 5 H 1.48503 * 109.46944 * 30.00130 * 3 2 1
6 6 H 1.48496 * 109.46886 * 149.99781 * 3 2 1
7 7 C 1.38806 * 119.99792 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99673 * 180.02562 * 7 2 1
9 9 S 1.76192 * 119.99980 * 359.97438 * 7 2 1
10 10 C 1.81000 * 99.99920 * 180.02562 * 9 7 2
11 11 C 1.50707 * 109.47036 * 179.97438 * 10 9 7
12 12 O 1.21279 * 119.99915 * 0.02562 * 11 10 9
13 13 N 1.34772 * 119.99632 * 179.97438 * 11 10 9
14 14 C 1.46502 * 119.99615 * 180.02562 * 13 11 10
15 15 H 1.08999 * 110.78281 * 31.76397 * 14 13 11
16 16 C 1.55159 * 110.71796 * 268.52128 * 14 13 11
17 17 C 1.55134 * 101.48452 * 205.96950 * 16 14 13
18 18 N 1.47426 * 104.72436 * 37.29713 * 17 16 14
19 19 C 1.34773 * 125.65349 * 155.81436 * 18 17 16
20 20 O 1.21279 * 120.00685 * 184.87722 * 19 18 17
21 21 C 1.50699 * 119.99653 * 4.87793 * 19 18 17
22 22 C 1.52998 * 115.55084 * 66.28964 * 21 19 18
23 23 F 1.39904 * 109.47479 * 148.66423 * 22 21 19
24 24 F 1.39904 * 109.47276 * 268.66092 * 22 21 19
25 25 C 1.53000 * 117.51916 * 211.99078 * 21 19 18
26 26 C 1.52999 * 60.00158 * 107.48139 * 25 21 19
27 27 C 1.47031 * 108.69961 * 335.55568 * 18 17 16
28 28 H 0.97005 * 119.99648 * 0.02562 * 1 2 3
29 29 H 1.08997 * 109.46923 * 60.00445 * 10 9 7
30 30 H 1.08998 * 109.47017 * 300.00374 * 10 9 7
31 31 H 0.96999 * 120.00646 * 359.97438 * 13 11 10
32 32 H 1.08996 * 111.00410 * 324.20919 * 16 14 13
33 33 H 1.08995 * 111.00058 * 88.06300 * 16 14 13
34 34 H 1.09003 * 110.49860 * 278.45775 * 17 16 14
35 35 H 1.09001 * 110.34248 * 156.06193 * 17 16 14
36 36 H 1.08995 * 109.47153 * 28.65647 * 22 21 19
37 37 H 1.08999 * 117.49913 * 214.97086 * 25 21 19
38 38 H 1.08999 * 117.49977 * 359.97438 * 25 21 19
39 39 H 1.09001 * 117.49880 * 252.51331 * 26 25 21
40 40 H 1.09005 * 117.49773 * 107.48807 * 26 25 21
41 41 H 1.08995 * 109.88180 * 120.70684 * 27 18 17
42 42 H 1.09003 * 109.87588 * 241.70967 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2504 1.6177 0.0000
4 1 2.4979 2.0464 -1.4001
5 1 1.4478 2.6527 0.7001
6 1 3.5479 1.4401 0.7001
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 16 1.1293 -2.7280 -0.0005
10 6 2.5158 -3.8914 -0.0005
11 6 1.9872 -5.3028 0.0001
12 8 0.7910 -5.5023 0.0000
13 7 2.8440 -6.3431 -0.0003
14 6 2.3302 -7.7151 -0.0003
15 1 1.3829 -7.7733 -0.5364
16 6 2.1733 -8.2424 1.4505
17 6 2.3050 -9.7735 1.2386
18 7 3.3280 -9.9196 0.1871
19 6 4.0990 -11.0068 -0.0132
20 8 4.9718 -10.9846 -0.8550
21 6 3.8765 -12.2500 0.8088
22 6 2.5440 -12.9651 0.5764
23 9 2.7116 -14.3399 0.7747
24 9 1.5898 -12.4773 1.4756
25 6 5.0973 -13.1163 1.1251
26 6 4.4523 -12.2723 2.2262
27 6 3.3636 -8.6851 -0.6107
28 1 -0.4850 0.8401 -0.0004
29 1 3.1243 -3.7314 0.8895
30 1 3.1244 -3.7313 -0.8905
31 1 3.8008 -6.1836 -0.0014
32 1 2.9688 -7.8635 2.0921
33 1 1.1933 -7.9886 1.8545
34 1 1.3567 -10.1959 0.9064
35 1 2.6349 -10.2564 2.1585
36 1 2.2075 -12.7836 -0.4443
37 1 4.9512 -14.1956 1.1676
38 1 6.0617 -12.7872 0.7383
39 1 4.9923 -11.3877 2.5639
40 1 3.8817 -12.7963 2.9930
41 1 4.3589 -8.2431 -0.5655
42 1 3.1026 -8.9052 -1.6459
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001350515776.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:34:28
Heat of formation + Delta-G solvation = -163.096964 kcal
Electronic energy + Delta-G solvation = -27883.502283 eV
Core-core repulsion = 23432.554672 eV
Total energy + Delta-G solvation = -4450.947610 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 348.111 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-50.08796 -48.07080 -41.64747 -40.64759 -38.81517 -37.50488 -35.35639 -34.57584
-32.29473 -30.75052 -29.63173 -28.50536 -27.64085 -25.37187 -23.60439 -23.27573
-22.39143 -21.73758 -20.26005 -19.85485 -19.09558 -18.37389 -18.21785 -18.08887
-17.57307 -17.11962 -16.87129 -16.65127 -16.46933 -16.36028 -15.76269 -15.44157
-14.96977 -14.80579 -14.67718 -14.60357 -14.42074 -14.38142 -14.27786 -13.73730
-13.60773 -13.49406 -13.15926 -12.98799 -12.88406 -12.79880 -12.71096 -12.56695
-12.56170 -12.01581 -11.78379 -11.71786 -11.60104 -11.14055 -11.13855 -10.97622
-10.26742 -10.19753 -9.88390 -8.65184 -8.34354 -6.11627 1.15424 1.24859
1.42588 1.42851 1.52875 1.58576 1.64456 2.25078 2.28579 2.32711
2.63709 2.99936 3.01780 3.14743 3.25934 3.32052 3.44998 3.55723
3.57808 3.92523 3.99839 4.05005 4.06654 4.12353 4.21085 4.32213
4.45467 4.52128 4.53652 4.58366 4.69840 4.72447 4.83995 4.90716
5.02468 5.03255 5.09954 5.42107 5.42913 6.20149 6.20424 6.44590
6.82933 7.07418 7.20648 8.74607
Molecular weight = 348.11amu
Principal moments of inertia in cm(-1)
A = 0.032295 B = 0.001804 C = 0.001758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 866.810848 B =15515.959910 C =15924.340849
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.910 5.910
2 C 0.013 3.987
3 Si 0.997 3.003
4 H -0.269 1.269
5 H -0.278 1.278
6 H -0.258 1.258
7 C -0.546 4.546
8 H 0.083 0.917
9 S -0.148 6.148
10 C -0.131 4.131
11 C 0.541 3.459
12 O -0.558 6.558
13 N -0.705 5.705
14 C 0.137 3.863
15 H 0.094 0.906
16 C -0.140 4.140
17 C 0.103 3.897
18 N -0.607 5.607
19 C 0.572 3.428
20 O -0.562 6.562
21 C -0.242 4.242
22 C 0.311 3.689
23 F -0.199 7.199
24 F -0.196 7.196
25 C -0.121 4.121
26 C -0.125 4.125
27 C 0.108 3.892
28 H 0.271 0.729
29 H 0.111 0.889
30 H 0.110 0.890
31 H 0.417 0.583
32 H 0.089 0.911
33 H 0.087 0.913
34 H 0.086 0.914
35 H 0.101 0.899
36 H 0.129 0.871
37 H 0.127 0.873
38 H 0.107 0.893
39 H 0.114 0.886
40 H 0.126 0.874
41 H 0.083 0.917
42 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.062 -28.309 4.613 30.741
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.192 4.192
3 Si 0.819 3.181
4 H -0.194 1.194
5 H -0.204 1.204
6 H -0.182 1.182
7 C -0.694 4.694
8 H 0.101 0.899
9 S 0.079 5.921
10 C -0.282 4.282
11 C 0.327 3.673
12 O -0.435 6.435
13 N -0.359 5.359
14 C 0.031 3.969
15 H 0.112 0.888
16 C -0.179 4.179
17 C -0.019 4.019
18 N -0.340 5.340
19 C 0.360 3.640
20 O -0.441 6.441
21 C -0.246 4.246
22 C 0.257 3.743
23 F -0.180 7.180
24 F -0.177 7.177
25 C -0.158 4.158
26 C -0.162 4.162
27 C -0.016 4.016
28 H 0.080 0.920
29 H 0.129 0.871
30 H 0.128 0.872
31 H 0.255 0.745
32 H 0.108 0.892
33 H 0.106 0.894
34 H 0.104 0.896
35 H 0.119 0.881
36 H 0.146 0.854
37 H 0.145 0.855
38 H 0.125 0.875
39 H 0.133 0.867
40 H 0.144 0.856
41 H 0.102 0.898
42 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 9.412 -28.621 4.174 30.417
hybrid contribution 1.700 1.455 -0.169 2.244
sum 11.112 -27.167 4.005 29.623
Atomic orbital electron populations
1.70178 1.07905 1.28570 1.48027 1.26110 0.95965 1.03274 0.93828
0.84975 0.78230 0.76174 0.78740 1.19419 1.20363 1.18215 1.23206
0.95351 0.92090 1.58758 0.89935 1.85544 1.10395 0.99111 1.97048
1.23380 1.03633 0.94331 1.06895 1.19981 0.86179 0.86428 0.74696
1.90703 1.17175 1.85929 1.49703 1.45651 1.10341 1.04173 1.75778
1.21880 0.97447 0.80235 0.97365 0.88756 1.23252 1.04309 0.94136
0.96221 1.22671 0.91603 0.96267 0.91360 1.48383 1.38059 1.14366
1.33154 1.18938 0.80168 0.82496 0.82389 1.90738 1.33771 1.83430
1.36155 1.22436 0.98003 0.99348 1.04783 1.20866 0.84854 0.74685
0.93877 1.92982 1.95753 1.32757 1.96498 1.93016 1.65783 1.87468
1.71476 1.23203 0.93979 0.99141 0.99496 1.23248 1.01163 1.03282
0.88509 1.22057 0.99906 0.84205 0.95383 0.92020 0.87098 0.87229
0.74549 0.89191 0.89435 0.89554 0.88099 0.85382 0.85513 0.87452
0.86737 0.85579 0.89845 0.90229
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.15 13.22 21.65 0.29 -54.87 16
2 C 0.01 0.73 5.49 84.86 0.47 1.20 16
3 Si 1.00 42.98 29.55 68.60 2.03 45.01 16
4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16
5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16
6 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16
7 C -0.55 -30.53 9.50 67.96 0.65 -29.89 16
8 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16
9 S -0.15 -7.96 20.57 -56.49 -1.16 -9.12 16
10 C -0.13 -4.86 6.16 71.24 0.44 -4.43 16
11 C 0.54 18.05 7.85 87.66 0.69 18.74 16
12 O -0.56 -23.66 15.51 -3.03 -0.05 -23.71 16
13 N -0.71 -15.28 5.18 -436.91 -2.26 -17.55 16
14 C 0.14 2.56 3.31 46.18 0.15 2.72 16
15 H 0.09 2.15 7.55 -2.39 -0.02 2.13 16
16 C -0.14 -2.17 6.78 32.07 0.22 -1.95 16
17 C 0.10 1.26 5.33 86.93 0.46 1.72 16
18 N -0.61 -9.26 3.33 -811.33 -2.70 -11.96 16
19 C 0.57 10.12 7.03 87.66 0.62 10.73 16
20 O -0.56 -14.23 17.05 -3.02 -0.05 -14.28 16
21 C -0.24 -2.98 1.47 -52.93 -0.08 -3.06 16
22 C 0.31 3.53 5.20 71.98 0.37 3.91 16
23 F -0.20 -2.60 15.90 44.97 0.72 -1.89 16
24 F -0.20 -2.42 14.90 44.97 0.67 -1.75 16
25 C -0.12 -1.26 9.44 30.59 0.29 -0.97 16
26 C -0.13 -1.04 9.13 30.59 0.28 -0.76 16
27 C 0.11 1.74 6.62 86.73 0.57 2.32 16
28 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16
29 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16
30 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16
31 H 0.42 6.47 8.37 -92.71 -0.78 5.69 16
32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16
33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.09 1.01 7.33 -2.39 -0.02 0.99 16
35 H 0.10 0.96 6.96 -2.39 -0.02 0.94 16
36 H 0.13 1.15 8.03 -2.39 -0.02 1.13 16
37 H 0.13 1.06 7.18 -2.39 -0.02 1.05 16
38 H 0.11 1.30 8.01 -2.39 -0.02 1.28 16
39 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16
40 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16
41 H 0.08 1.29 7.72 -2.39 -0.02 1.27 16
42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
Total: -1.00 -77.68 374.11 2.89 -74.79
By element:
Atomic # 1 Polarization: 14.74 SS G_CDS: 0.29 Total: 15.03 kcal
Atomic # 6 Polarization: -4.84 SS G_CDS: 5.13 Total: 0.29 kcal
Atomic # 7 Polarization: -79.70 SS G_CDS: -4.67 Total: -84.37 kcal
Atomic # 8 Polarization: -37.89 SS G_CDS: -0.10 Total: -37.99 kcal
Atomic # 9 Polarization: -5.03 SS G_CDS: 1.39 Total: -3.64 kcal
Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal
Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal
Total: -77.68 2.89 -74.79 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001350515776.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -88.308 kcal
(2) G-P(sol) polarization free energy of solvation -77.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.992 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.789 kcal
(6) G-S(sol) free energy of system = (1) + (5) -163.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds