Wall clock time and date at job start Wed Apr 1 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 120.00212 * 2 1 4 4 H 1.48498 * 109.46913 * 269.99878 * 3 2 1 5 5 H 1.48503 * 109.46944 * 30.00130 * 3 2 1 6 6 H 1.48496 * 109.46886 * 149.99781 * 3 2 1 7 7 C 1.38806 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99673 * 180.02562 * 7 2 1 9 9 S 1.76192 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99920 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47036 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99915 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99632 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99615 * 180.02562 * 13 11 10 15 15 H 1.08999 * 110.78281 * 31.76397 * 14 13 11 16 16 C 1.55159 * 110.71796 * 268.52128 * 14 13 11 17 17 C 1.55134 * 101.48452 * 205.96950 * 16 14 13 18 18 N 1.47426 * 104.72436 * 37.29713 * 17 16 14 19 19 C 1.34773 * 125.65349 * 155.81436 * 18 17 16 20 20 O 1.21279 * 120.00685 * 184.87722 * 19 18 17 21 21 C 1.50699 * 119.99653 * 4.87793 * 19 18 17 22 22 C 1.52998 * 115.55084 * 66.28964 * 21 19 18 23 23 F 1.39904 * 109.47479 * 148.66423 * 22 21 19 24 24 F 1.39904 * 109.47276 * 268.66092 * 22 21 19 25 25 C 1.53000 * 117.51916 * 211.99078 * 21 19 18 26 26 C 1.52999 * 60.00158 * 107.48139 * 25 21 19 27 27 C 1.47031 * 108.69961 * 335.55568 * 18 17 16 28 28 H 0.97005 * 119.99648 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46923 * 60.00445 * 10 9 7 30 30 H 1.08998 * 109.47017 * 300.00374 * 10 9 7 31 31 H 0.96999 * 120.00646 * 359.97438 * 13 11 10 32 32 H 1.08996 * 111.00410 * 324.20919 * 16 14 13 33 33 H 1.08995 * 111.00058 * 88.06300 * 16 14 13 34 34 H 1.09003 * 110.49860 * 278.45775 * 17 16 14 35 35 H 1.09001 * 110.34248 * 156.06193 * 17 16 14 36 36 H 1.08995 * 109.47153 * 28.65647 * 22 21 19 37 37 H 1.08999 * 117.49913 * 214.97086 * 25 21 19 38 38 H 1.08999 * 117.49977 * 359.97438 * 25 21 19 39 39 H 1.09001 * 117.49880 * 252.51331 * 26 25 21 40 40 H 1.09005 * 117.49773 * 107.48807 * 26 25 21 41 41 H 1.08995 * 109.88180 * 120.70684 * 27 18 17 42 42 H 1.09003 * 109.87588 * 241.70967 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9872 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3431 -0.0003 14 6 2.3302 -7.7151 -0.0003 15 1 1.3829 -7.7733 -0.5364 16 6 2.1733 -8.2424 1.4505 17 6 2.3050 -9.7735 1.2386 18 7 3.3280 -9.9196 0.1871 19 6 4.0990 -11.0068 -0.0132 20 8 4.9718 -10.9846 -0.8550 21 6 3.8765 -12.2500 0.8088 22 6 2.5440 -12.9651 0.5764 23 9 2.7116 -14.3399 0.7747 24 9 1.5898 -12.4773 1.4756 25 6 5.0973 -13.1163 1.1251 26 6 4.4523 -12.2723 2.2262 27 6 3.3636 -8.6851 -0.6107 28 1 -0.4850 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8895 30 1 3.1244 -3.7313 -0.8905 31 1 3.8008 -6.1836 -0.0014 32 1 2.9688 -7.8635 2.0921 33 1 1.1933 -7.9886 1.8545 34 1 1.3567 -10.1959 0.9064 35 1 2.6349 -10.2564 2.1585 36 1 2.2075 -12.7836 -0.4443 37 1 4.9512 -14.1956 1.1676 38 1 6.0617 -12.7872 0.7383 39 1 4.9923 -11.3877 2.5639 40 1 3.8817 -12.7963 2.9930 41 1 4.3589 -8.2431 -0.5655 42 1 3.1026 -8.9052 -1.6459 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350515776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:28 Heat of formation + Delta-G solvation = -163.096964 kcal Electronic energy + Delta-G solvation = -27883.502283 eV Core-core repulsion = 23432.554672 eV Total energy + Delta-G solvation = -4450.947610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.08796 -48.07080 -41.64747 -40.64759 -38.81517 -37.50488 -35.35639 -34.57584 -32.29473 -30.75052 -29.63173 -28.50536 -27.64085 -25.37187 -23.60439 -23.27573 -22.39143 -21.73758 -20.26005 -19.85485 -19.09558 -18.37389 -18.21785 -18.08887 -17.57307 -17.11962 -16.87129 -16.65127 -16.46933 -16.36028 -15.76269 -15.44157 -14.96977 -14.80579 -14.67718 -14.60357 -14.42074 -14.38142 -14.27786 -13.73730 -13.60773 -13.49406 -13.15926 -12.98799 -12.88406 -12.79880 -12.71096 -12.56695 -12.56170 -12.01581 -11.78379 -11.71786 -11.60104 -11.14055 -11.13855 -10.97622 -10.26742 -10.19753 -9.88390 -8.65184 -8.34354 -6.11627 1.15424 1.24859 1.42588 1.42851 1.52875 1.58576 1.64456 2.25078 2.28579 2.32711 2.63709 2.99936 3.01780 3.14743 3.25934 3.32052 3.44998 3.55723 3.57808 3.92523 3.99839 4.05005 4.06654 4.12353 4.21085 4.32213 4.45467 4.52128 4.53652 4.58366 4.69840 4.72447 4.83995 4.90716 5.02468 5.03255 5.09954 5.42107 5.42913 6.20149 6.20424 6.44590 6.82933 7.07418 7.20648 8.74607 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.001804 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.810848 B =15515.959910 C =15924.340849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.148 6.148 10 C -0.131 4.131 11 C 0.541 3.459 12 O -0.558 6.558 13 N -0.705 5.705 14 C 0.137 3.863 15 H 0.094 0.906 16 C -0.140 4.140 17 C 0.103 3.897 18 N -0.607 5.607 19 C 0.572 3.428 20 O -0.562 6.562 21 C -0.242 4.242 22 C 0.311 3.689 23 F -0.199 7.199 24 F -0.196 7.196 25 C -0.121 4.121 26 C -0.125 4.125 27 C 0.108 3.892 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.417 0.583 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.083 0.917 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.062 -28.309 4.613 30.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.079 5.921 10 C -0.282 4.282 11 C 0.327 3.673 12 O -0.435 6.435 13 N -0.359 5.359 14 C 0.031 3.969 15 H 0.112 0.888 16 C -0.179 4.179 17 C -0.019 4.019 18 N -0.340 5.340 19 C 0.360 3.640 20 O -0.441 6.441 21 C -0.246 4.246 22 C 0.257 3.743 23 F -0.180 7.180 24 F -0.177 7.177 25 C -0.158 4.158 26 C -0.162 4.162 27 C -0.016 4.016 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.255 0.745 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.102 0.898 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.412 -28.621 4.174 30.417 hybrid contribution 1.700 1.455 -0.169 2.244 sum 11.112 -27.167 4.005 29.623 Atomic orbital electron populations 1.70178 1.07905 1.28570 1.48027 1.26110 0.95965 1.03274 0.93828 0.84975 0.78230 0.76174 0.78740 1.19419 1.20363 1.18215 1.23206 0.95351 0.92090 1.58758 0.89935 1.85544 1.10395 0.99111 1.97048 1.23380 1.03633 0.94331 1.06895 1.19981 0.86179 0.86428 0.74696 1.90703 1.17175 1.85929 1.49703 1.45651 1.10341 1.04173 1.75778 1.21880 0.97447 0.80235 0.97365 0.88756 1.23252 1.04309 0.94136 0.96221 1.22671 0.91603 0.96267 0.91360 1.48383 1.38059 1.14366 1.33154 1.18938 0.80168 0.82496 0.82389 1.90738 1.33771 1.83430 1.36155 1.22436 0.98003 0.99348 1.04783 1.20866 0.84854 0.74685 0.93877 1.92982 1.95753 1.32757 1.96498 1.93016 1.65783 1.87468 1.71476 1.23203 0.93979 0.99141 0.99496 1.23248 1.01163 1.03282 0.88509 1.22057 0.99906 0.84205 0.95383 0.92020 0.87098 0.87229 0.74549 0.89191 0.89435 0.89554 0.88099 0.85382 0.85513 0.87452 0.86737 0.85579 0.89845 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.15 13.22 21.65 0.29 -54.87 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.55 -30.53 9.50 67.96 0.65 -29.89 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 9 S -0.15 -7.96 20.57 -56.49 -1.16 -9.12 16 10 C -0.13 -4.86 6.16 71.24 0.44 -4.43 16 11 C 0.54 18.05 7.85 87.66 0.69 18.74 16 12 O -0.56 -23.66 15.51 -3.03 -0.05 -23.71 16 13 N -0.71 -15.28 5.18 -436.91 -2.26 -17.55 16 14 C 0.14 2.56 3.31 46.18 0.15 2.72 16 15 H 0.09 2.15 7.55 -2.39 -0.02 2.13 16 16 C -0.14 -2.17 6.78 32.07 0.22 -1.95 16 17 C 0.10 1.26 5.33 86.93 0.46 1.72 16 18 N -0.61 -9.26 3.33 -811.33 -2.70 -11.96 16 19 C 0.57 10.12 7.03 87.66 0.62 10.73 16 20 O -0.56 -14.23 17.05 -3.02 -0.05 -14.28 16 21 C -0.24 -2.98 1.47 -52.93 -0.08 -3.06 16 22 C 0.31 3.53 5.20 71.98 0.37 3.91 16 23 F -0.20 -2.60 15.90 44.97 0.72 -1.89 16 24 F -0.20 -2.42 14.90 44.97 0.67 -1.75 16 25 C -0.12 -1.26 9.44 30.59 0.29 -0.97 16 26 C -0.13 -1.04 9.13 30.59 0.28 -0.76 16 27 C 0.11 1.74 6.62 86.73 0.57 2.32 16 28 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 29 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 30 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 31 H 0.42 6.47 8.37 -92.71 -0.78 5.69 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.01 7.33 -2.39 -0.02 0.99 16 35 H 0.10 0.96 6.96 -2.39 -0.02 0.94 16 36 H 0.13 1.15 8.03 -2.39 -0.02 1.13 16 37 H 0.13 1.06 7.18 -2.39 -0.02 1.05 16 38 H 0.11 1.30 8.01 -2.39 -0.02 1.28 16 39 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.08 1.29 7.72 -2.39 -0.02 1.27 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -77.68 374.11 2.89 -74.79 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.29 Total: 15.03 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.13 Total: 0.29 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -4.67 Total: -84.37 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.10 Total: -37.99 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 1.39 Total: -3.64 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -77.68 2.89 -74.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350515776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.308 kcal (2) G-P(sol) polarization free energy of solvation -77.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds