Wall clock time and date at job start Wed Apr 1 2020 05:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86807 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47288 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47020 * 120.00486 * 3 2 1 6 6 H 1.48499 * 109.47330 * 239.99718 * 3 2 1 7 7 C 1.38798 * 120.00550 * 180.27941 * 2 1 3 8 8 H 1.08000 * 119.99904 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99804 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47341 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99746 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00416 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00164 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47265 * 175.01903 * 14 13 11 16 16 H 1.09006 * 112.73815 * 314.99050 * 15 14 13 17 17 C 1.53494 * 113.46904 * 85.80670 * 15 14 13 18 18 C 1.53500 * 83.34528 * 140.85024 * 17 15 14 19 19 N 1.47065 * 87.98343 * 333.93366 * 18 17 15 20 20 C 1.34771 * 136.05774 * 207.15460 * 19 18 17 21 21 O 1.21281 * 120.00309 * 184.98914 * 20 19 18 22 22 C 1.50698 * 120.00225 * 4.99031 * 20 19 18 23 23 H 1.09003 * 112.84535 * 311.20181 * 22 20 19 24 24 C 1.53781 * 113.61403 * 82.49987 * 22 20 19 25 25 C 1.53780 * 87.08131 * 139.98336 * 24 22 20 26 26 C 1.53778 * 87.08191 * 334.57056 * 25 24 22 27 27 F 1.39905 * 113.61149 * 270.88213 * 26 25 24 28 28 F 1.39895 * 113.61723 * 139.97805 * 26 25 24 29 29 H 0.96995 * 120.00016 * 359.72118 * 1 2 3 30 30 H 1.08990 * 109.47428 * 300.00826 * 10 9 7 31 31 H 1.09002 * 109.46690 * 60.00792 * 10 9 7 32 32 H 0.96995 * 119.99899 * 0.02562 * 13 11 10 33 33 H 1.09009 * 109.46663 * 295.01510 * 14 13 11 34 34 H 1.08996 * 109.47188 * 55.01387 * 14 13 11 35 35 H 1.09004 * 114.21114 * 254.43774 * 17 15 14 36 36 H 1.09002 * 114.20714 * 27.26324 * 17 15 14 37 37 H 1.08994 * 113.46495 * 219.15312 * 18 17 15 38 38 H 1.08999 * 113.52041 * 88.72181 * 18 17 15 39 39 H 1.08999 * 113.61734 * 254.53647 * 24 22 20 40 40 H 1.09004 * 113.61795 * 25.43536 * 24 22 20 41 41 H 1.09001 * 113.61823 * 220.02076 * 25 24 22 42 42 H 1.09006 * 113.68739 * 89.12691 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1041 1.6965 1.2125 6 1 3.1040 1.6966 -1.2124 7 6 2.0104 -1.2019 -0.0059 8 1 3.0904 -1.2018 -0.0054 9 16 1.1295 -2.7279 -0.0126 10 6 2.5161 -3.8913 -0.0178 11 6 1.9878 -5.3026 -0.0247 12 8 0.7915 -5.5022 -0.0264 13 7 2.8446 -6.3429 -0.0289 14 6 2.3309 -7.7149 -0.0361 15 6 3.4980 -8.6958 -0.1649 16 1 4.2183 -8.3959 -0.9261 17 6 4.1431 -9.0584 1.1798 18 6 4.2255 -10.4600 0.5594 19 7 3.0736 -10.0991 -0.2807 20 6 2.0702 -10.7625 -0.8886 21 8 1.2976 -10.1661 -1.6086 22 6 1.9081 -12.2452 -0.6737 23 1 2.8390 -12.7965 -0.8074 24 6 1.1595 -12.6018 0.6214 25 6 0.4524 -13.7046 -0.1839 26 6 0.7180 -12.8518 -1.4356 27 9 -0.2983 -11.9309 -1.7123 28 9 1.0931 -13.6016 -2.5555 29 1 -0.4850 0.8400 0.0041 30 1 3.1248 -3.7272 -0.9069 31 1 3.1246 -3.7351 0.8730 32 1 3.8013 -6.1833 -0.0271 33 1 1.7955 -7.9073 0.8938 34 1 1.6526 -7.8445 -0.8794 35 1 5.1113 -8.5883 1.3524 36 1 3.4685 -8.9863 2.0330 37 1 4.0126 -11.2611 1.2670 38 1 5.1401 -10.6312 -0.0083 39 1 1.8081 -12.9842 1.4096 40 1 0.4884 -11.8160 0.9683 41 1 -0.6056 -13.8104 0.0560 42 1 0.9838 -14.6564 -0.1833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358586831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:19 Heat of formation + Delta-G solvation = -104.019150 kcal Electronic energy + Delta-G solvation = -27745.573006 eV Core-core repulsion = 23297.187202 eV Total energy + Delta-G solvation = -4448.385804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.08010 -47.39689 -41.11169 -39.24782 -38.66680 -37.19862 -34.43106 -32.40921 -30.82940 -29.92907 -27.89546 -27.23539 -25.52369 -25.45530 -23.42015 -22.80943 -20.85042 -20.44043 -19.36594 -18.39557 -17.86227 -17.56153 -17.01828 -16.70634 -16.41781 -16.22830 -15.54856 -15.26239 -15.11490 -14.78773 -14.65968 -14.50129 -14.13427 -13.99281 -13.86290 -13.67013 -13.61254 -13.23296 -13.00312 -12.92396 -12.54056 -12.47671 -12.41917 -12.07872 -11.92482 -11.71983 -11.70948 -11.20648 -11.03639 -11.02598 -10.99686 -10.74758 -10.00603 -9.80869 -9.39601 -9.18638 -9.04586 -8.87536 -8.21146 -6.47799 -6.19327 -3.90075 2.05547 2.20201 2.99972 3.09008 3.13224 3.21888 3.24659 3.29101 3.33520 3.62668 3.75044 3.79180 3.83510 3.84985 4.13590 4.22226 4.41726 4.50542 4.66447 4.69824 4.82751 4.85875 4.90262 4.93217 5.01705 5.10462 5.15420 5.19106 5.21972 5.27141 5.52422 5.53677 5.65730 5.74287 5.91319 6.01629 6.14882 6.58056 7.24198 7.60865 7.69037 7.73310 8.36841 8.64022 9.25466 10.88016 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.001878 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.797406 B =14905.020427 C =15636.734169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.513 6.513 13 N -0.736 5.736 14 C 0.116 3.884 15 C 0.124 3.876 16 H 0.101 0.899 17 C -0.151 4.151 18 C 0.099 3.901 19 N -0.641 5.641 20 C 0.547 3.453 21 O -0.506 6.506 22 C -0.163 4.163 23 H 0.138 0.862 24 C -0.117 4.117 25 C -0.164 4.164 26 C 0.279 3.721 27 F -0.155 7.155 28 F -0.189 7.189 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.409 -31.220 4.267 33.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.302 4.302 11 C 0.317 3.683 12 O -0.386 6.386 13 N -0.392 5.392 14 C -0.009 4.009 15 C 0.021 3.979 16 H 0.119 0.881 17 C -0.189 4.189 18 C -0.024 4.024 19 N -0.378 5.378 20 C 0.335 3.665 21 O -0.379 6.379 22 C -0.185 4.185 23 H 0.156 0.844 24 C -0.155 4.155 25 C -0.202 4.202 26 C 0.242 3.758 27 F -0.136 7.136 28 F -0.170 7.170 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.231 0.769 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.565 -31.250 3.693 32.889 hybrid contribution 2.544 1.298 -0.329 2.875 sum 12.109 -29.952 3.364 32.482 Atomic orbital electron populations 1.70009 1.05952 1.27562 1.46732 1.25000 0.95032 0.99028 0.94572 0.86221 0.79222 0.81256 0.78764 1.20827 1.19955 1.19948 1.22825 0.94863 0.91676 1.59066 0.90969 1.85457 1.04888 0.96275 1.96710 1.23516 1.06576 0.95237 1.04915 1.20319 0.86525 0.86200 0.75230 1.90728 1.15378 1.85493 1.47048 1.45822 1.09862 1.05116 1.78396 1.21413 0.95476 0.80450 1.03602 1.22905 0.95413 0.82570 0.97031 0.88135 1.23595 1.02628 0.95781 0.96848 1.23007 0.88572 0.98611 0.92160 1.49644 1.26192 1.09315 1.52694 1.19634 0.80113 0.87846 0.78912 1.90875 1.42762 1.68636 1.35621 1.24007 1.00750 0.94894 0.98859 0.84447 1.22764 0.99054 0.98656 0.94988 1.24075 1.04782 0.99312 0.92055 1.21750 0.86381 0.85096 0.82542 1.93143 1.59733 1.66214 1.94477 1.93023 1.91233 1.76222 1.56503 0.92124 0.89200 0.89173 0.76926 0.91362 0.89771 0.88575 0.88064 0.90000 0.89311 0.88288 0.88044 0.87994 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 11 C 0.53 10.24 7.85 -10.99 -0.09 10.16 16 12 O -0.51 -12.34 15.86 5.55 0.09 -12.26 16 13 N -0.74 -9.91 5.55 -60.29 -0.33 -10.24 16 14 C 0.12 1.49 5.47 -4.04 -0.02 1.47 16 15 C 0.12 1.02 4.07 -72.39 -0.29 0.72 16 16 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 17 C -0.15 -0.68 8.02 -26.22 -0.21 -0.89 16 18 C 0.10 0.37 8.42 -8.50 -0.07 0.29 16 19 N -0.64 -5.31 3.57 -177.45 -0.63 -5.94 16 20 C 0.55 6.03 7.43 -10.99 -0.08 5.95 16 21 O -0.51 -8.27 14.35 5.56 0.08 -8.20 16 22 C -0.16 -1.16 3.87 -90.96 -0.35 -1.51 16 23 H 0.14 0.59 8.14 -51.93 -0.42 0.16 16 24 C -0.12 -0.55 7.61 -25.92 -0.20 -0.75 16 25 C -0.16 -0.79 7.87 -25.92 -0.20 -1.00 16 26 C 0.28 2.60 3.02 -25.92 -0.08 2.52 16 27 F -0.16 -2.10 15.20 2.25 0.03 -2.07 16 28 F -0.19 -1.97 17.41 2.25 0.04 -1.93 16 29 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 32 H 0.40 3.81 8.48 -40.82 -0.35 3.46 16 33 H 0.07 0.93 7.89 -51.92 -0.41 0.52 16 34 H 0.08 1.44 7.14 -51.93 -0.37 1.06 16 35 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.10 0.52 7.95 -51.93 -0.41 0.11 16 37 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 39 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.10 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -40.25 378.44 -8.43 -48.68 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.73 Total: -1.67 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.18 Total: 1.02 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.23 Total: -41.92 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.17 Total: -20.45 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.07 Total: -4.00 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.25 -8.43 -48.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358586831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.337 kcal (2) G-P(sol) polarization free energy of solvation -40.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds