Wall clock time and date at job start Wed Apr 1 2020 05:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86807 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47288 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47020 * 120.00486 * 3 2 1 6 6 H 1.48499 * 109.47330 * 239.99718 * 3 2 1 7 7 C 1.38798 * 120.00550 * 180.27941 * 2 1 3 8 8 H 1.08000 * 119.99904 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99804 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47341 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99746 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00416 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00164 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47265 * 175.01903 * 14 13 11 16 16 H 1.09006 * 112.73815 * 314.99050 * 15 14 13 17 17 C 1.53494 * 113.46904 * 85.80670 * 15 14 13 18 18 C 1.53500 * 83.34528 * 140.85024 * 17 15 14 19 19 N 1.47065 * 87.98343 * 333.93366 * 18 17 15 20 20 C 1.34771 * 136.05774 * 207.15460 * 19 18 17 21 21 O 1.21281 * 120.00309 * 184.98914 * 20 19 18 22 22 C 1.50698 * 120.00225 * 4.99031 * 20 19 18 23 23 H 1.09003 * 112.84535 * 311.20181 * 22 20 19 24 24 C 1.53781 * 113.61403 * 82.49987 * 22 20 19 25 25 C 1.53780 * 87.08131 * 139.98336 * 24 22 20 26 26 C 1.53778 * 87.08191 * 334.57056 * 25 24 22 27 27 F 1.39905 * 113.61149 * 270.88213 * 26 25 24 28 28 F 1.39895 * 113.61723 * 139.97805 * 26 25 24 29 29 H 0.96995 * 120.00016 * 359.72118 * 1 2 3 30 30 H 1.08990 * 109.47428 * 300.00826 * 10 9 7 31 31 H 1.09002 * 109.46690 * 60.00792 * 10 9 7 32 32 H 0.96995 * 119.99899 * 0.02562 * 13 11 10 33 33 H 1.09009 * 109.46663 * 295.01510 * 14 13 11 34 34 H 1.08996 * 109.47188 * 55.01387 * 14 13 11 35 35 H 1.09004 * 114.21114 * 254.43774 * 17 15 14 36 36 H 1.09002 * 114.20714 * 27.26324 * 17 15 14 37 37 H 1.08994 * 113.46495 * 219.15312 * 18 17 15 38 38 H 1.08999 * 113.52041 * 88.72181 * 18 17 15 39 39 H 1.08999 * 113.61734 * 254.53647 * 24 22 20 40 40 H 1.09004 * 113.61795 * 25.43536 * 24 22 20 41 41 H 1.09001 * 113.61823 * 220.02076 * 25 24 22 42 42 H 1.09006 * 113.68739 * 89.12691 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1041 1.6965 1.2125 6 1 3.1040 1.6966 -1.2124 7 6 2.0104 -1.2019 -0.0059 8 1 3.0904 -1.2018 -0.0054 9 16 1.1295 -2.7279 -0.0126 10 6 2.5161 -3.8913 -0.0178 11 6 1.9878 -5.3026 -0.0247 12 8 0.7915 -5.5022 -0.0264 13 7 2.8446 -6.3429 -0.0289 14 6 2.3309 -7.7149 -0.0361 15 6 3.4980 -8.6958 -0.1649 16 1 4.2183 -8.3959 -0.9261 17 6 4.1431 -9.0584 1.1798 18 6 4.2255 -10.4600 0.5594 19 7 3.0736 -10.0991 -0.2807 20 6 2.0702 -10.7625 -0.8886 21 8 1.2976 -10.1661 -1.6086 22 6 1.9081 -12.2452 -0.6737 23 1 2.8390 -12.7965 -0.8074 24 6 1.1595 -12.6018 0.6214 25 6 0.4524 -13.7046 -0.1839 26 6 0.7180 -12.8518 -1.4356 27 9 -0.2983 -11.9309 -1.7123 28 9 1.0931 -13.6016 -2.5555 29 1 -0.4850 0.8400 0.0041 30 1 3.1248 -3.7272 -0.9069 31 1 3.1246 -3.7351 0.8730 32 1 3.8013 -6.1833 -0.0271 33 1 1.7955 -7.9073 0.8938 34 1 1.6526 -7.8445 -0.8794 35 1 5.1113 -8.5883 1.3524 36 1 3.4685 -8.9863 2.0330 37 1 4.0126 -11.2611 1.2670 38 1 5.1401 -10.6312 -0.0083 39 1 1.8081 -12.9842 1.4096 40 1 0.4884 -11.8160 0.9683 41 1 -0.6056 -13.8104 0.0560 42 1 0.9838 -14.6564 -0.1833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358586831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:18 Heat of formation + Delta-G solvation = -134.920950 kcal Electronic energy + Delta-G solvation = -27746.913009 eV Core-core repulsion = 23297.187202 eV Total energy + Delta-G solvation = -4449.725807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83684 -48.19644 -41.79129 -40.56894 -39.49448 -37.89789 -35.78783 -34.58782 -31.89189 -31.01936 -28.86182 -27.88881 -27.60607 -26.04365 -24.15710 -23.36870 -21.97884 -21.31256 -20.16382 -19.78284 -19.00728 -18.19964 -17.98339 -17.78138 -17.50130 -17.17265 -16.88259 -16.66560 -16.36736 -16.15665 -15.71971 -15.39770 -15.11915 -14.96272 -14.75868 -14.62117 -14.57730 -14.44400 -14.31944 -13.80125 -13.59439 -13.45535 -13.17753 -13.00544 -12.88204 -12.84840 -12.63734 -12.54012 -12.40198 -12.16053 -11.79464 -11.76572 -11.62582 -11.12986 -11.05918 -10.76793 -10.28414 -10.22435 -9.83817 -8.69031 -8.34503 -6.13907 1.22450 1.36506 1.42361 1.44489 1.52814 1.55579 1.63986 2.26876 2.31192 2.43843 2.70774 2.99436 3.12046 3.25051 3.31258 3.35743 3.37444 3.66674 3.71775 3.95411 3.97492 4.02544 4.26542 4.29270 4.41436 4.45577 4.48133 4.48644 4.52146 4.66635 4.68072 4.72761 4.83272 4.92801 5.03215 5.12350 5.26098 5.35451 5.41237 6.19469 6.45002 6.61768 6.97871 7.06084 7.20449 8.74626 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.001878 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.797406 B =14905.020427 C =15636.734169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.002 2.998 4 H -0.281 1.281 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.087 0.913 9 S -0.161 6.161 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.571 6.571 13 N -0.704 5.704 14 C 0.122 3.878 15 C 0.115 3.885 16 H 0.117 0.883 17 C -0.134 4.134 18 C 0.105 3.895 19 N -0.644 5.644 20 C 0.532 3.468 21 O -0.579 6.579 22 C -0.153 4.153 23 H 0.176 0.824 24 C -0.105 4.105 25 C -0.144 4.144 26 C 0.240 3.760 27 F -0.192 7.192 28 F -0.202 7.202 29 H 0.271 0.729 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.422 0.578 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.212 -32.853 6.210 37.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.823 3.177 4 H -0.206 1.206 5 H -0.183 1.183 6 H -0.186 1.186 7 C -0.692 4.692 8 H 0.105 0.895 9 S 0.066 5.934 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.449 6.449 13 N -0.359 5.359 14 C -0.004 4.004 15 C 0.011 3.989 16 H 0.135 0.865 17 C -0.172 4.172 18 C -0.015 4.015 19 N -0.380 5.380 20 C 0.322 3.678 21 O -0.458 6.458 22 C -0.174 4.174 23 H 0.193 0.807 24 C -0.143 4.143 25 C -0.182 4.182 26 C 0.203 3.797 27 F -0.173 7.173 28 F -0.183 7.183 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.260 0.740 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.146 0.854 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.161 0.839 40 H 0.095 0.905 41 H 0.120 0.880 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.485 -32.933 5.677 36.423 hybrid contribution 1.104 1.707 -0.955 2.246 sum 15.589 -31.226 4.722 35.219 Atomic orbital electron populations 1.70195 1.08111 1.28682 1.47989 1.26201 0.95991 1.03534 0.93734 0.84957 0.77731 0.75398 0.79605 1.20577 1.18307 1.18647 1.23172 0.95418 0.91691 1.58917 0.89533 1.85729 1.10953 0.99641 1.97087 1.23333 1.03421 0.93522 1.07245 1.20240 0.86166 0.86983 0.74964 1.90719 1.17953 1.86182 1.50081 1.45449 1.10471 1.04258 1.75727 1.21375 0.97132 0.80941 1.00917 1.23166 0.93634 0.81559 1.00507 0.86515 1.23592 1.03339 0.96247 0.94019 1.23354 0.87416 0.98981 0.91790 1.49893 1.26610 1.09484 1.51984 1.20433 0.79803 0.89458 0.78065 1.90845 1.45558 1.70366 1.39024 1.24177 1.01578 0.92205 0.99453 0.80709 1.22784 0.98802 0.97744 0.94928 1.24136 1.05537 1.00080 0.88399 1.22775 0.87210 0.86192 0.83504 1.93059 1.61489 1.67894 1.94834 1.92984 1.91335 1.76404 1.57545 0.92032 0.86994 0.86312 0.74027 0.92446 0.94735 0.85376 0.88641 0.87036 0.86650 0.83863 0.90464 0.87965 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.25 13.22 21.65 0.29 -56.96 16 2 C 0.01 0.57 5.49 84.86 0.47 1.04 16 3 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 7 C -0.54 -31.36 9.50 67.95 0.65 -30.71 16 8 H 0.09 4.55 7.80 -2.91 -0.02 4.53 16 9 S -0.16 -9.22 20.57 -56.49 -1.16 -10.38 16 10 C -0.12 -4.97 6.16 71.23 0.44 -4.53 16 11 C 0.53 20.77 7.85 87.66 0.69 21.45 16 12 O -0.57 -29.13 15.86 -3.05 -0.05 -29.18 16 13 N -0.70 -18.41 5.55 -463.06 -2.57 -20.98 16 14 C 0.12 3.23 5.47 86.38 0.47 3.70 16 15 C 0.12 1.67 4.07 41.79 0.17 1.84 16 16 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 17 C -0.13 -0.64 8.02 30.93 0.25 -0.39 16 18 C 0.10 0.26 8.42 83.18 0.70 0.96 16 19 N -0.64 -9.53 3.57 -833.71 -2.97 -12.51 16 20 C 0.53 11.91 7.43 87.66 0.65 12.56 16 21 O -0.58 -20.83 14.35 -3.03 -0.04 -20.87 16 22 C -0.15 -1.94 3.87 -11.01 -0.04 -1.98 16 23 H 0.18 0.80 8.14 -2.39 -0.02 0.78 16 24 C -0.11 -0.73 7.61 31.12 0.24 -0.49 16 25 C -0.14 -1.10 7.87 31.12 0.24 -0.85 16 26 C 0.24 4.55 3.02 31.12 0.09 4.64 16 27 F -0.19 -5.79 15.20 44.97 0.68 -5.11 16 28 F -0.20 -4.29 17.41 44.97 0.78 -3.51 16 29 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 31 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 32 H 0.42 6.89 8.48 -92.71 -0.79 6.11 16 33 H 0.06 1.64 7.89 -2.38 -0.02 1.62 16 34 H 0.03 1.29 7.14 -2.39 -0.02 1.27 16 35 H 0.13 -0.10 8.14 -2.38 -0.02 -0.12 16 36 H 0.10 0.64 7.95 -2.39 -0.02 0.62 16 37 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.14 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.08 0.95 8.09 -2.38 -0.02 0.93 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.15 0.13 8.14 -2.38 -0.02 0.11 16 Total: -1.00 -99.79 378.44 2.27 -97.52 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.27 Total: 8.85 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.01 Total: 7.23 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -5.26 Total: -90.44 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.09 Total: -50.05 kcal Atomic # 9 Polarization: -10.08 SS G_CDS: 1.47 Total: -8.62 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.16 Total: -10.38 kcal Total: -99.79 2.27 -97.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358586831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.398 kcal (2) G-P(sol) polarization free energy of solvation -99.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds