Wall clock time and date at job start Wed Apr 1 2020 04:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86793 * 120.00150 * 2 1 4 4 H 1.48501 * 109.47420 * 268.63147 * 3 2 1 5 5 H 1.48497 * 109.47387 * 28.63729 * 3 2 1 6 6 H 1.48504 * 109.46947 * 148.63520 * 3 2 1 7 7 C 1.39945 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00018 * 348.86798 * 7 2 1 9 9 C 1.41397 * 120.00167 * 168.86732 * 7 2 1 10 10 C 1.40727 * 120.24113 * 326.22595 * 9 7 2 11 11 C 1.37597 * 119.74545 * 180.02562 * 10 9 7 12 12 C 1.38665 * 120.24792 * 359.72187 * 11 10 9 13 13 C 1.38610 * 120.49539 * 0.55751 * 12 11 10 14 14 C 1.37633 * 120.25280 * 359.44092 * 13 12 11 15 15 S 1.76199 * 120.13190 * 180.25547 * 14 13 12 16 16 O 1.42095 * 106.40339 * 224.71998 * 15 14 13 17 17 O 1.42104 * 106.39876 * 357.64165 * 15 14 13 18 18 N 1.65603 * 107.21642 * 111.17893 * 15 14 13 19 19 C 1.46498 * 120.00194 * 66.04756 * 18 15 14 20 20 C 1.50698 * 109.47415 * 165.28946 * 19 18 15 21 21 N 1.30500 * 126.37399 * 90.02014 * 20 19 18 22 22 N 1.28576 * 109.66690 * 180.02562 * 21 20 19 23 23 C 1.30672 * 109.63392 * 0.08523 * 22 21 20 24 24 N 1.35171 * 107.33395 * 359.54980 * 23 22 21 25 25 C 1.46801 * 111.15028 * 180.02562 * 24 23 22 26 26 C 1.54422 * 105.62659 * 343.36683 * 25 24 23 27 27 C 1.51346 * 142.71906 * 179.79530 * 23 22 21 28 28 H 0.97004 * 119.99304 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.13295 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.87987 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.75341 * 180.29470 * 12 11 10 32 32 H 1.08007 * 119.87314 * 179.72033 * 13 12 11 33 33 H 0.97001 * 120.00004 * 246.04100 * 18 15 14 34 34 H 1.09004 * 109.46522 * 285.28672 * 19 18 15 35 35 H 1.08996 * 109.47231 * 45.28249 * 19 18 15 36 36 H 1.09000 * 110.39418 * 224.21850 * 25 24 23 37 37 H 1.09008 * 110.00295 * 102.30985 * 25 24 23 38 38 H 1.09005 * 110.95769 * 267.25604 * 26 25 24 39 39 H 1.08999 * 110.96361 * 143.52019 * 26 25 24 40 40 H 1.09003 * 110.46881 * 315.15419 * 27 23 22 41 41 H 1.08994 * 110.47802 * 77.63523 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.5188 2.0297 -1.3997 5 1 1.4257 2.6608 0.6710 6 1 3.5251 1.4485 0.7287 7 6 2.0079 -1.2120 -0.0005 8 1 1.4831 -2.1386 0.1796 9 6 3.4019 -1.2236 -0.2370 10 6 3.9795 -0.2884 -1.1158 11 6 5.3372 -0.3092 -1.3388 12 6 6.1362 -1.2432 -0.6970 13 6 5.5773 -2.1726 0.1662 14 6 4.2217 -2.1703 0.4043 15 16 3.5155 -3.3489 1.5073 16 8 2.3475 -3.8464 0.8690 17 8 4.5813 -4.1842 1.9382 18 7 3.0003 -2.5205 2.8455 19 6 1.9026 -1.5569 2.7329 20 6 1.3895 -1.2167 4.1084 21 7 1.8143 -0.2505 4.8759 22 7 1.1533 -0.2514 5.9787 23 6 0.2772 -1.2208 5.9647 24 7 0.3961 -1.8539 4.7764 25 6 -0.5569 -2.9656 4.6708 26 6 -1.0307 -3.2458 6.1136 27 6 -0.8091 -1.8743 6.7915 28 1 -0.4849 0.8401 0.0004 29 1 3.3596 0.4423 -1.6139 30 1 5.7827 0.4072 -2.0131 31 1 7.2016 -1.2493 -0.8743 32 1 6.2086 -2.8985 0.6573 33 1 3.4252 -2.6735 3.7040 34 1 2.2631 -0.6510 2.2454 35 1 1.0967 -1.9915 2.1417 36 1 -0.0677 -3.8472 4.2568 37 1 -1.4017 -2.6744 4.0465 38 1 -0.4182 -4.0160 6.5824 39 1 -2.0845 -3.5235 6.1310 40 1 -0.4766 -2.0072 7.8210 41 1 -1.7218 -1.2794 6.7604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364780805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:03 Heat of formation + Delta-G solvation = 38.738374 kcal Electronic energy + Delta-G solvation = -29280.933690 eV Core-core repulsion = 25289.427503 eV Total energy + Delta-G solvation = -3991.506187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.26273 -38.02065 -37.30346 -36.54347 -35.26062 -35.02733 -33.86370 -32.05400 -30.80976 -30.20089 -29.83000 -28.01559 -25.81742 -25.15961 -22.69990 -22.19262 -21.29005 -20.97485 -20.63329 -18.80098 -17.83440 -17.46645 -16.94362 -16.74546 -16.17817 -15.47562 -15.27674 -14.84243 -14.67266 -14.34067 -14.23778 -13.79681 -13.61779 -13.55368 -13.37281 -13.14994 -12.82044 -12.74119 -12.27262 -11.93445 -11.89610 -11.69362 -11.49034 -11.43421 -11.36072 -11.27911 -11.17788 -11.01494 -10.76066 -10.44102 -10.18460 -10.04577 -9.99077 -9.65070 -9.37582 -8.94897 -8.92883 -8.32555 -7.90350 -7.26262 -4.98203 1.24470 1.93072 1.98554 2.44063 2.53112 2.90876 2.95857 3.05418 3.12440 3.65141 3.72115 3.86275 4.13045 4.17585 4.40568 4.45707 4.53362 4.63787 4.99603 5.13292 5.15346 5.23918 5.30659 5.36484 5.46523 5.60623 5.73557 5.77370 5.84926 5.99944 6.12182 6.27312 6.28939 6.34064 6.40070 6.54546 6.87124 6.92137 7.00049 7.14176 7.32942 7.41931 7.48087 7.73804 8.05909 8.21655 8.43267 8.88819 9.70011 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.004929 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.185698 B = 5679.694049 C = 6780.472596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.090 3.910 3 Si 0.897 3.103 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.238 1.238 7 C -0.476 4.476 8 H 0.136 0.864 9 C 0.166 3.834 10 C -0.234 4.234 11 C -0.044 4.044 12 C -0.251 4.251 13 C 0.017 3.983 14 C -0.766 4.766 15 S 2.708 3.292 16 O -0.964 6.964 17 O -0.991 6.991 18 N -1.119 6.119 19 C 0.215 3.785 20 C 0.199 3.801 21 N -0.276 5.276 22 N -0.284 5.284 23 C 0.145 3.855 24 N -0.484 5.484 25 C 0.097 3.903 26 C -0.128 4.128 27 C -0.037 4.037 28 H 0.292 0.708 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.410 0.590 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 -3.518 8.881 10.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.161 1.161 7 C -0.503 4.503 8 H 0.154 0.846 9 C 0.161 3.839 10 C -0.253 4.253 11 C -0.062 4.062 12 C -0.272 4.272 13 C -0.003 4.003 14 C -0.860 4.860 15 S 2.805 3.195 16 O -0.954 6.954 17 O -0.981 6.981 18 N -0.876 5.876 19 C 0.088 3.912 20 C -0.068 4.068 21 N -0.117 5.117 22 N -0.125 5.125 23 C -0.123 4.123 24 N -0.176 5.176 25 C -0.025 4.025 26 C -0.167 4.167 27 C -0.077 4.077 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.242 0.758 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.943 -3.166 8.920 10.254 hybrid contribution -0.006 0.575 -0.624 0.849 sum -3.949 -2.591 8.296 9.546 Atomic orbital electron populations 1.69619 1.07893 1.31031 1.31522 1.26181 0.94926 1.01523 0.90734 0.86535 0.81505 0.79824 0.79885 1.18976 1.21001 1.16058 1.20510 0.91228 0.97667 1.40922 0.84624 1.17136 0.92322 0.87909 0.86508 1.21351 0.95067 1.04625 1.04306 1.20887 0.93843 0.95731 0.95762 1.20566 0.98267 1.01661 1.06666 1.20404 0.92607 0.94392 0.92879 1.29869 1.03089 1.27056 1.26033 1.00919 0.72962 0.73078 0.72565 1.93503 1.48954 1.78269 1.74722 1.93478 1.56714 1.65706 1.82241 1.55656 1.47096 1.58870 1.25960 1.20136 0.89746 0.95102 0.86242 1.24898 0.90029 0.93147 0.98710 1.74469 1.21452 1.17147 0.98647 1.73976 1.06022 1.17275 1.15204 1.25952 1.01524 0.95551 0.89302 1.47234 1.27862 1.26788 1.15714 1.22489 0.91900 0.88626 0.99497 1.22817 1.03725 0.97248 0.92872 1.20618 0.94267 0.94143 0.98637 0.89660 0.87190 0.88090 0.87890 0.86670 0.75778 0.87057 0.87152 0.88142 0.88232 0.89251 0.87765 0.88148 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.12 13.93 55.55 0.77 -17.35 16 2 C 0.09 2.08 4.61 -17.34 -0.08 2.00 16 3 Si 0.90 19.07 24.14 -169.99 -4.10 14.97 16 4 H -0.26 -5.41 6.51 56.52 0.37 -5.05 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.24 -5.21 6.89 56.52 0.39 -4.82 16 7 C -0.48 -11.39 5.31 -37.74 -0.20 -11.59 16 8 H 0.14 3.43 4.69 -52.49 -0.25 3.19 16 9 C 0.17 3.91 5.02 -106.83 -0.54 3.37 16 10 C -0.23 -5.26 7.11 -38.88 -0.28 -5.53 16 11 C -0.04 -0.88 10.02 -39.66 -0.40 -1.28 16 12 C -0.25 -4.99 10.05 -39.29 -0.39 -5.39 16 13 C 0.02 0.36 9.53 -39.66 -0.38 -0.02 16 14 C -0.77 -17.08 5.96 -38.87 -0.23 -17.31 16 15 S 2.71 55.90 5.44 -107.50 -0.58 55.31 16 16 O -0.96 -22.02 14.87 -57.17 -0.85 -22.87 16 17 O -0.99 -21.22 16.97 -57.17 -0.97 -22.19 16 18 N -1.12 -20.34 5.99 -11.66 -0.07 -20.41 16 19 C 0.22 4.15 4.97 -5.20 -0.03 4.12 16 20 C 0.20 3.66 7.70 -154.89 -1.19 2.47 16 21 N -0.28 -5.55 12.21 32.81 0.40 -5.15 16 22 N -0.28 -5.25 12.22 32.93 0.40 -4.84 16 23 C 0.14 2.11 8.69 -154.84 -1.35 0.76 16 24 N -0.48 -7.24 3.62 -109.38 -0.40 -7.63 16 25 C 0.10 0.98 7.77 -3.13 -0.02 0.96 16 26 C -0.13 -0.81 7.17 -25.15 -0.18 -0.99 16 27 C -0.04 -0.30 6.85 -26.73 -0.18 -0.49 16 28 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 29 H 0.11 2.41 4.57 -52.49 -0.24 2.17 16 30 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.12 2.19 7.33 -52.48 -0.38 1.81 16 33 H 0.41 6.59 8.64 -34.47 -0.30 6.30 16 34 H 0.11 2.34 5.73 -51.93 -0.30 2.04 16 35 H 0.11 2.21 6.32 -51.93 -0.33 1.88 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 0.93 8.14 -51.92 -0.42 0.50 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -31.77 341.24 -10.06 -41.84 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.36 Total: 12.10 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -5.45 Total: -28.92 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 1.11 Total: -55.38 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.82 Total: -45.05 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.10 Total: 14.97 kcal Atomic # 16 Polarization: 55.90 SS G_CDS: -0.58 Total: 55.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.77 -10.06 -41.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364780805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.574 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds