Wall clock time and date at job start Wed Apr 1 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48502 * 109.47286 * 270.00186 * 3 2 1 5 5 H 1.48493 * 109.47111 * 29.99988 * 3 2 1 6 6 H 1.48495 * 109.46915 * 150.00323 * 3 2 1 7 7 C 1.40028 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00210 * 195.69913 * 7 2 1 9 9 C 1.41321 * 119.99833 * 15.69568 * 7 2 1 10 10 C 1.40585 * 119.78378 * 192.16401 * 9 7 2 11 11 C 1.38345 * 119.14512 * 180.02562 * 10 9 7 12 12 C 1.38642 * 118.68303 * 359.97438 * 11 10 9 13 13 C 1.39750 * 119.48983 * 0.02562 * 12 11 10 14 14 N 1.38833 * 119.58422 * 179.97438 * 13 12 11 15 15 S 1.65598 * 120.00176 * 194.39308 * 14 13 12 16 16 O 1.42108 * 106.40036 * 307.92469 * 15 14 13 17 17 O 1.42095 * 106.40428 * 175.00431 * 15 14 13 18 18 C 1.76198 * 107.22076 * 61.45938 * 15 14 13 19 19 C 1.39878 * 126.03383 * 84.41707 * 18 15 14 20 20 N 1.30843 * 108.19799 * 179.97438 * 19 18 15 21 21 N 1.40081 * 108.20577 * 0.02562 * 20 19 18 22 22 C 1.46506 * 126.03439 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47232 * 305.02443 * 22 21 20 24 24 C 1.52998 * 117.49681 * 243.62295 * 23 22 21 25 25 C 1.52997 * 117.49891 * 174.99979 * 23 22 21 26 26 C 1.34949 * 107.92729 * 0.26095 * 21 20 19 27 27 N 1.31980 * 120.83506 * 0.25517 * 13 12 11 28 28 H 0.96994 * 119.99617 * 4.61710 * 1 2 3 29 29 H 1.08001 * 120.42748 * 0.02562 * 10 9 7 30 30 H 1.08003 * 120.66103 * 179.97438 * 11 10 9 31 31 H 1.08003 * 120.25153 * 180.02562 * 12 11 10 32 32 H 0.97000 * 119.99780 * 14.39175 * 14 13 12 33 33 H 1.07993 * 125.89814 * 359.97438 * 19 18 15 34 34 H 1.09000 * 109.46823 * 65.02790 * 22 21 20 35 35 H 1.09004 * 109.46782 * 185.02681 * 22 21 20 36 36 H 1.08999 * 115.54640 * 29.33129 * 23 22 21 37 37 H 1.08992 * 117.50454 * 0.02562 * 24 23 22 38 38 H 1.09000 * 117.49508 * 145.02516 * 24 23 22 39 39 H 1.08995 * 117.49796 * 214.97848 * 25 23 22 40 40 H 1.09005 * 117.49506 * 359.97438 * 25 23 22 41 41 H 1.08003 * 126.12792 * 179.73629 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0466 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4402 0.7000 7 6 2.0077 -1.2126 -0.0005 8 1 3.0574 -1.2301 0.2525 9 6 1.3407 -2.4136 -0.3322 10 6 1.9645 -3.6494 -0.0875 11 6 1.2998 -4.8169 -0.4178 12 6 0.0359 -4.7265 -0.9805 13 6 -0.5315 -3.4682 -1.1992 14 7 -1.7967 -3.3755 -1.7630 15 16 -2.3355 -1.9256 -2.3543 16 8 -2.1536 -0.9753 -1.3135 17 8 -3.5946 -2.1824 -2.9608 18 6 -1.2437 -1.4543 -3.6545 19 6 -1.3242 -1.8697 -4.9877 20 7 -0.3436 -1.3110 -5.6497 21 7 0.3932 -0.5218 -4.7573 22 6 1.5766 0.2764 -5.0873 23 6 2.6290 -0.6193 -5.7439 24 6 3.9564 -0.8068 -5.0066 25 6 3.8985 0.0523 -6.2714 26 6 -0.1758 -0.6316 -3.5385 27 7 0.1226 -2.3668 -0.8816 28 1 -0.4849 0.8373 -0.0676 29 1 2.9501 -3.6870 0.3526 30 1 1.7563 -5.7795 -0.2408 31 1 -0.5060 -5.6218 -1.2476 32 1 -2.3652 -4.1600 -1.8106 33 1 -2.0673 -2.5364 -5.3995 34 1 1.2967 1.0733 -5.7762 35 1 1.9871 0.7113 -4.1760 36 1 2.2394 -1.4694 -6.3040 37 1 4.0799 -0.2925 -4.0536 38 1 4.4404 -1.7806 -5.0815 39 1 4.3444 -0.3563 -7.1781 40 1 3.9837 1.1323 -6.1509 41 1 0.1594 -0.1470 -2.6333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365742027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:53 Heat of formation + Delta-G solvation = 71.513920 kcal Electronic energy + Delta-G solvation = -29458.260997 eV Core-core repulsion = 25468.176064 eV Total energy + Delta-G solvation = -3990.084933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93531 -38.49458 -37.57280 -36.28463 -34.87321 -34.62878 -33.20800 -32.70829 -30.55501 -30.01821 -28.84662 -27.05781 -25.57993 -22.48381 -21.90259 -21.79741 -21.47766 -21.37985 -20.19465 -18.58993 -17.92568 -17.67771 -16.55983 -16.18832 -15.86562 -15.29027 -14.92174 -14.84091 -14.60897 -14.40092 -14.04710 -13.91082 -13.73720 -13.09334 -13.03421 -12.78239 -12.56914 -12.23499 -11.86201 -11.62435 -11.49956 -11.46991 -11.27111 -11.16059 -11.11117 -10.87962 -10.75941 -10.64297 -10.59574 -10.39053 -10.18198 -10.13448 -9.98919 -9.24571 -9.19910 -8.81735 -8.25140 -7.74659 -7.25437 -6.55408 -4.54851 1.23106 2.04878 2.59677 2.67232 2.70335 2.92703 3.02944 3.04218 3.09479 3.67357 3.81245 3.88129 4.31370 4.50757 4.62814 4.71224 4.80706 4.91565 5.08652 5.18146 5.32959 5.35922 5.50770 5.54937 5.61650 5.78447 5.82660 5.87837 6.00698 6.01946 6.12346 6.16282 6.44066 6.69781 6.70293 6.76262 6.98007 7.14307 7.19675 7.48968 7.54871 7.68257 7.75692 8.03236 8.18070 8.60658 8.83485 9.85292 10.24817 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007720 B = 0.006585 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.113950 B = 4251.020474 C = 5509.608896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.670 5.670 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.085 0.915 9 C 0.295 3.705 10 C -0.298 4.298 11 C -0.033 4.033 12 C -0.339 4.339 13 C 0.392 3.608 14 N -1.037 6.037 15 S 2.716 3.284 16 O -0.895 6.895 17 O -0.990 6.990 18 C -0.805 4.805 19 C 0.124 3.876 20 N -0.303 5.303 21 N -0.367 5.367 22 C 0.159 3.841 23 C -0.169 4.169 24 C -0.172 4.172 25 C -0.172 4.172 26 C 0.216 3.784 27 N -0.525 5.525 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.418 0.582 33 H 0.190 0.810 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 0.758 -8.202 8.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.289 5.289 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.103 0.897 9 C 0.170 3.830 10 C -0.321 4.321 11 C -0.058 4.058 12 C -0.367 4.367 13 C 0.153 3.847 14 N -0.785 5.785 15 S 2.803 3.197 16 O -0.885 6.885 17 O -0.980 6.980 18 C -0.903 4.903 19 C -0.067 4.067 20 N -0.122 5.122 21 N -0.144 5.144 22 C 0.038 3.962 23 C -0.187 4.187 24 C -0.209 4.209 25 C -0.210 4.210 26 C 0.064 3.936 27 N -0.246 5.246 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.252 0.748 33 H 0.206 0.794 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 2.459 2.605 -9.202 9.874 hybrid contribution 0.769 -0.843 0.453 1.228 sum 3.228 1.762 -8.749 9.490 Atomic orbital electron populations 1.70002 1.05877 1.29532 1.23538 1.26053 0.94845 1.00363 0.94981 0.86736 0.81147 0.82359 0.79206 1.19694 1.20011 1.18486 1.19486 0.96853 0.90276 1.39897 0.89740 1.18020 0.86042 0.91885 0.87043 1.21615 1.02463 0.93347 1.14691 1.20667 0.93549 0.96838 0.94732 1.20629 0.99676 0.95177 1.21171 1.17969 0.84393 0.91438 0.90902 1.53224 1.23640 1.30078 1.71588 1.01368 0.71840 0.73151 0.73344 1.93729 1.84571 1.58214 1.51949 1.93522 1.39591 1.85672 1.79209 1.31491 1.22098 1.21630 1.15122 1.23426 0.95745 0.96984 0.90506 1.77203 1.07547 1.10820 1.16605 1.49046 1.22801 1.36168 1.06418 1.21396 0.81568 0.91603 1.01672 1.22494 0.89119 1.02548 1.04577 1.23127 0.99431 1.01869 0.96473 1.22962 1.00205 0.99298 0.98492 1.22817 0.89169 0.92073 0.89575 1.67902 1.10806 1.25205 1.20659 0.90160 0.88256 0.88451 0.88616 0.74772 0.79354 0.89254 0.88034 0.86538 0.87996 0.88464 0.88501 0.88566 0.78374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -16.20 9.65 55.55 0.54 -15.66 16 2 C 0.07 1.52 5.28 -17.34 -0.09 1.43 16 3 Si 0.88 16.63 29.59 -169.99 -5.03 11.60 16 4 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.43 -10.39 9.10 -37.74 -0.34 -10.73 16 8 H 0.08 1.92 7.89 -52.49 -0.41 1.51 16 9 C 0.29 7.29 6.45 -84.99 -0.55 6.74 16 10 C -0.30 -6.80 9.83 -38.66 -0.38 -7.18 16 11 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 12 C -0.34 -7.13 9.97 -38.87 -0.39 -7.51 16 13 C 0.39 8.70 7.27 -155.31 -1.13 7.57 16 14 N -1.04 -19.69 5.82 31.14 0.18 -19.51 16 15 S 2.72 53.47 5.55 -107.50 -0.60 52.87 16 16 O -0.90 -20.44 14.82 -57.17 -0.85 -21.28 16 17 O -0.99 -19.86 17.92 -57.17 -1.02 -20.88 16 18 C -0.81 -15.29 5.94 -40.01 -0.24 -15.52 16 19 C 0.12 2.13 11.87 -17.36 -0.21 1.93 16 20 N -0.30 -5.31 12.23 30.63 0.37 -4.94 16 21 N -0.37 -6.26 3.68 -61.36 -0.23 -6.49 16 22 C 0.16 2.14 6.79 -4.04 -0.03 2.11 16 23 C -0.17 -2.13 5.93 -90.62 -0.54 -2.67 16 24 C -0.17 -2.04 10.18 -26.73 -0.27 -2.31 16 25 C -0.17 -1.70 10.25 -26.73 -0.27 -1.98 16 26 C 0.22 4.13 10.83 -17.22 -0.19 3.94 16 27 N -0.52 -12.71 6.07 -10.33 -0.06 -12.77 16 28 H 0.29 6.53 8.30 -40.82 -0.34 6.20 16 29 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 30 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.42 6.48 8.85 -34.47 -0.30 6.18 16 33 H 0.19 2.64 8.06 -52.49 -0.42 2.22 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.30 7.80 -51.93 -0.41 0.89 16 36 H 0.12 1.65 7.91 -51.93 -0.41 1.24 16 37 H 0.10 1.24 8.03 -51.93 -0.42 0.82 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.20 4.03 7.49 -52.48 -0.39 3.64 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -30.42 367.56 -11.04 -41.46 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -4.86 Total: 15.36 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -5.02 Total: -25.29 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.80 Total: -59.37 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.87 Total: -42.17 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: 53.47 SS G_CDS: -0.60 Total: 52.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.42 -11.04 -41.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365742027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.973 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds