Wall clock time and date at job start Wed Apr 1 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48502 * 109.47286 * 270.00186 * 3 2 1 5 5 H 1.48493 * 109.47111 * 29.99988 * 3 2 1 6 6 H 1.48495 * 109.46915 * 150.00323 * 3 2 1 7 7 C 1.40028 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00210 * 195.69913 * 7 2 1 9 9 C 1.41321 * 119.99833 * 15.69568 * 7 2 1 10 10 C 1.40585 * 119.78378 * 192.16401 * 9 7 2 11 11 C 1.38345 * 119.14512 * 180.02562 * 10 9 7 12 12 C 1.38642 * 118.68303 * 359.97438 * 11 10 9 13 13 C 1.39750 * 119.48983 * 0.02562 * 12 11 10 14 14 N 1.38833 * 119.58422 * 179.97438 * 13 12 11 15 15 S 1.65598 * 120.00176 * 194.39308 * 14 13 12 16 16 O 1.42108 * 106.40036 * 307.92469 * 15 14 13 17 17 O 1.42095 * 106.40428 * 175.00431 * 15 14 13 18 18 C 1.76198 * 107.22076 * 61.45938 * 15 14 13 19 19 C 1.39878 * 126.03383 * 84.41707 * 18 15 14 20 20 N 1.30843 * 108.19799 * 179.97438 * 19 18 15 21 21 N 1.40081 * 108.20577 * 0.02562 * 20 19 18 22 22 C 1.46506 * 126.03439 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47232 * 305.02443 * 22 21 20 24 24 C 1.52998 * 117.49681 * 243.62295 * 23 22 21 25 25 C 1.52997 * 117.49891 * 174.99979 * 23 22 21 26 26 C 1.34949 * 107.92729 * 0.26095 * 21 20 19 27 27 N 1.31980 * 120.83506 * 0.25517 * 13 12 11 28 28 H 0.96994 * 119.99617 * 4.61710 * 1 2 3 29 29 H 1.08001 * 120.42748 * 0.02562 * 10 9 7 30 30 H 1.08003 * 120.66103 * 179.97438 * 11 10 9 31 31 H 1.08003 * 120.25153 * 180.02562 * 12 11 10 32 32 H 0.97000 * 119.99780 * 14.39175 * 14 13 12 33 33 H 1.07993 * 125.89814 * 359.97438 * 19 18 15 34 34 H 1.09000 * 109.46823 * 65.02790 * 22 21 20 35 35 H 1.09004 * 109.46782 * 185.02681 * 22 21 20 36 36 H 1.08999 * 115.54640 * 29.33129 * 23 22 21 37 37 H 1.08992 * 117.50454 * 0.02562 * 24 23 22 38 38 H 1.09000 * 117.49508 * 145.02516 * 24 23 22 39 39 H 1.08995 * 117.49796 * 214.97848 * 25 23 22 40 40 H 1.09005 * 117.49506 * 359.97438 * 25 23 22 41 41 H 1.08003 * 126.12792 * 179.73629 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0466 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4402 0.7000 7 6 2.0077 -1.2126 -0.0005 8 1 3.0574 -1.2301 0.2525 9 6 1.3407 -2.4136 -0.3322 10 6 1.9645 -3.6494 -0.0875 11 6 1.2998 -4.8169 -0.4178 12 6 0.0359 -4.7265 -0.9805 13 6 -0.5315 -3.4682 -1.1992 14 7 -1.7967 -3.3755 -1.7630 15 16 -2.3355 -1.9256 -2.3543 16 8 -2.1536 -0.9753 -1.3135 17 8 -3.5946 -2.1824 -2.9608 18 6 -1.2437 -1.4543 -3.6545 19 6 -1.3242 -1.8697 -4.9877 20 7 -0.3436 -1.3110 -5.6497 21 7 0.3932 -0.5218 -4.7573 22 6 1.5766 0.2764 -5.0873 23 6 2.6290 -0.6193 -5.7439 24 6 3.9564 -0.8068 -5.0066 25 6 3.8985 0.0523 -6.2714 26 6 -0.1758 -0.6316 -3.5385 27 7 0.1226 -2.3668 -0.8816 28 1 -0.4849 0.8373 -0.0676 29 1 2.9501 -3.6870 0.3526 30 1 1.7563 -5.7795 -0.2408 31 1 -0.5060 -5.6218 -1.2476 32 1 -2.3652 -4.1600 -1.8106 33 1 -2.0673 -2.5364 -5.3995 34 1 1.2967 1.0733 -5.7762 35 1 1.9871 0.7113 -4.1760 36 1 2.2394 -1.4694 -6.3040 37 1 4.0799 -0.2925 -4.0536 38 1 4.4404 -1.7806 -5.0815 39 1 4.3444 -0.3563 -7.1781 40 1 3.9837 1.1323 -6.1509 41 1 0.1594 -0.1470 -2.6333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365742027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:52 Heat of formation + Delta-G solvation = 53.380366 kcal Electronic energy + Delta-G solvation = -29459.047327 eV Core-core repulsion = 25468.176064 eV Total energy + Delta-G solvation = -3990.871263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29623 -40.19517 -38.52560 -37.90585 -36.53353 -36.28897 -34.89509 -33.93753 -32.26920 -31.43145 -30.56037 -28.23881 -27.31175 -23.57693 -23.36032 -23.18607 -22.95813 -22.82128 -21.36276 -20.13184 -19.60072 -19.10365 -18.11021 -17.84939 -17.11042 -16.59169 -16.48997 -16.26508 -16.04195 -15.89353 -15.63298 -15.24083 -14.91485 -14.70642 -14.51908 -14.20052 -13.90061 -13.83613 -13.11367 -13.07529 -13.01066 -12.86318 -12.73412 -12.57190 -12.51472 -12.46166 -12.40354 -12.26649 -12.00711 -11.77018 -11.61748 -11.39859 -11.12240 -10.88318 -10.58480 -10.20610 -9.97259 -9.46727 -8.97185 -8.25520 -6.33382 -0.32622 0.61470 1.02210 1.23732 1.25548 1.37861 1.46562 1.53610 1.57554 2.26394 2.29570 2.76557 2.88099 3.00756 3.18402 3.60880 3.77543 3.86877 3.93618 3.94927 4.00598 4.05867 4.14587 4.22303 4.40547 4.47187 4.60399 4.68277 4.72674 4.84821 4.93642 4.99624 5.09473 5.11501 5.17723 5.28329 5.36888 5.52769 5.78025 5.80587 5.95657 6.01218 6.36248 6.38350 6.41504 6.87601 7.06955 8.11438 8.54882 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007720 B = 0.006585 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.113950 B = 4251.020474 C = 5509.608896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.036 3.964 3 Si 0.945 3.055 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.461 4.461 8 H 0.086 0.914 9 C 0.266 3.734 10 C -0.321 4.321 11 C -0.033 4.033 12 C -0.339 4.339 13 C 0.374 3.626 14 N -1.028 6.028 15 S 2.732 3.268 16 O -0.930 6.930 17 O -0.995 6.995 18 C -0.815 4.815 19 C 0.120 3.880 20 N -0.307 5.307 21 N -0.361 5.361 22 C 0.149 3.851 23 C -0.184 4.184 24 C -0.186 4.186 25 C -0.140 4.140 26 C 0.202 3.798 27 N -0.539 5.539 28 H 0.285 0.715 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.433 0.567 33 H 0.218 0.782 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 0.738 -9.620 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.190 4.190 3 Si 0.766 3.234 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.104 0.896 9 C 0.141 3.859 10 C -0.344 4.344 11 C -0.057 4.057 12 C -0.367 4.367 13 C 0.135 3.865 14 N -0.778 5.778 15 S 2.821 3.179 16 O -0.919 6.919 17 O -0.985 6.985 18 C -0.915 4.915 19 C -0.069 4.069 20 N -0.126 5.126 21 N -0.138 5.138 22 C 0.029 3.971 23 C -0.203 4.203 24 C -0.223 4.223 25 C -0.177 4.177 26 C 0.048 3.952 27 N -0.260 5.260 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.270 0.730 33 H 0.235 0.765 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.295 2.556 -10.630 11.418 hybrid contribution 0.505 -0.943 0.869 1.378 sum 3.800 1.613 -9.761 10.598 Atomic orbital electron populations 1.70102 1.07315 1.30201 1.24502 1.26663 0.95372 1.03023 0.93974 0.85758 0.79543 0.78014 0.80054 1.17729 1.20313 1.18324 1.19717 0.97090 0.91154 1.41184 0.89627 1.18430 0.86739 0.92981 0.87742 1.21803 1.03173 0.93664 1.15754 1.21055 0.93440 0.97728 0.93519 1.21028 0.99834 0.95789 1.20003 1.18309 0.85235 0.91769 0.91158 1.53031 1.22901 1.30675 1.71229 1.00662 0.71604 0.72701 0.72961 1.93694 1.85131 1.59476 1.53599 1.93505 1.40064 1.85733 1.79187 1.31341 1.22222 1.22342 1.15572 1.23914 0.96175 0.97146 0.89707 1.77176 1.07652 1.10924 1.16809 1.49333 1.23167 1.35739 1.05587 1.21759 0.80776 0.92010 1.02568 1.22382 0.89552 1.02771 1.05577 1.23162 0.99189 1.02532 0.97396 1.23084 0.96807 1.00083 0.97764 1.22661 0.89857 0.92692 0.89976 1.67886 1.10895 1.26282 1.20925 0.90325 0.87583 0.85064 0.85628 0.72967 0.76521 0.86948 0.87631 0.88286 0.88560 0.88689 0.86951 0.86673 0.79817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -34.86 9.65 21.84 0.21 -34.65 16 2 C 0.04 1.68 5.28 85.29 0.45 2.13 16 3 Si 0.95 34.28 29.59 68.60 2.03 36.31 16 4 H -0.25 -8.33 7.11 99.48 0.71 -7.63 16 5 H -0.28 -10.13 7.11 99.48 0.71 -9.43 16 6 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 7 C -0.46 -22.57 9.10 23.46 0.21 -22.35 16 8 H 0.09 3.99 7.89 -2.92 -0.02 3.97 16 9 C 0.27 13.40 6.45 40.19 0.26 13.66 16 10 C -0.32 -14.66 9.83 22.87 0.22 -14.44 16 11 C -0.03 -1.34 10.15 22.39 0.23 -1.11 16 12 C -0.34 -13.72 9.97 22.73 0.23 -13.49 16 13 C 0.37 16.52 7.27 133.40 0.97 17.49 16 14 N -1.03 -38.50 5.82 -55.38 -0.32 -38.82 16 15 S 2.73 107.80 5.55 -56.49 -0.31 107.49 16 16 O -0.93 -43.52 14.82 -128.00 -1.90 -45.41 16 17 O -0.99 -39.28 17.92 -128.00 -2.29 -41.57 16 18 C -0.81 -30.86 5.94 21.99 0.13 -30.73 16 19 C 0.12 4.02 11.87 85.24 1.01 5.04 16 20 N -0.31 -10.45 12.23 -57.02 -0.70 -11.14 16 21 N -0.36 -12.16 3.68 -348.04 -1.28 -13.44 16 22 C 0.15 3.83 6.79 86.38 0.59 4.42 16 23 C -0.18 -4.42 5.93 -10.79 -0.06 -4.49 16 24 C -0.19 -4.21 10.18 30.59 0.31 -3.90 16 25 C -0.14 -2.40 10.25 30.59 0.31 -2.09 16 26 C 0.20 7.80 10.83 83.54 0.90 8.71 16 27 N -0.54 -26.49 6.07 -186.59 -1.13 -27.62 16 28 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 29 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 30 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.43 12.90 8.85 -96.75 -0.86 12.04 16 33 H 0.22 5.67 8.06 -2.91 -0.02 5.65 16 34 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.11 2.61 7.80 -2.39 -0.02 2.59 16 36 H 0.10 2.75 7.91 -2.39 -0.02 2.73 16 37 H 0.10 2.28 8.03 -2.39 -0.02 2.26 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.18 7.72 7.49 -2.91 -0.02 7.70 16 Total: -1.00 -65.64 367.56 0.29 -65.34 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: 0.22 Total: 44.66 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 5.77 Total: -41.15 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -3.22 Total: -125.67 kcal Atomic # 8 Polarization: -82.79 SS G_CDS: -4.19 Total: -86.99 kcal Atomic # 14 Polarization: 34.28 SS G_CDS: 2.03 Total: 36.31 kcal Atomic # 16 Polarization: 107.80 SS G_CDS: -0.31 Total: 107.49 kcal Total: -65.64 0.29 -65.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365742027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.724 kcal (2) G-P(sol) polarization free energy of solvation -65.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds