Wall clock time and date at job start Wed Apr 1 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48500 * 109.47431 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47209 * 300.00258 * 3 2 1 6 6 H 1.48503 * 109.46752 * 60.00055 * 3 2 1 7 7 C 1.37875 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00520 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00179 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46718 * 60.00106 * 9 7 2 11 11 N 1.46500 * 109.47306 * 180.02562 * 9 7 2 12 12 C 1.34776 * 119.99569 * 205.00081 * 11 9 7 13 13 O 1.21589 * 120.00456 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99712 * 180.02562 * 12 11 9 15 15 C 1.39944 * 120.00323 * 185.31473 * 14 12 11 16 16 C 1.38890 * 120.06771 * 33.25998 * 15 14 12 17 17 C 1.38097 * 119.93012 * 180.02562 * 16 15 14 18 18 C 1.38300 * 120.07061 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.93147 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.47047 * 359.97438 * 19 18 17 21 21 C 1.38262 * 120.14184 * 0.23270 * 18 17 16 22 22 C 1.50694 * 119.96924 * 179.74374 * 21 18 17 23 23 O 1.42899 * 109.47159 * 179.97438 * 22 21 18 24 24 C 1.38142 * 120.06494 * 359.48968 * 21 18 17 25 25 C 1.53000 * 109.47091 * 300.00325 * 9 7 2 26 26 F 1.39903 * 109.47084 * 299.99724 * 25 9 7 27 27 F 1.39899 * 109.47150 * 59.99366 * 25 9 7 28 28 F 1.39894 * 109.47232 * 179.97438 * 25 9 7 29 29 H 0.97002 * 119.99791 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99832 * 25.00151 * 11 9 7 31 31 H 0.97002 * 119.99899 * 5.31580 * 14 12 11 32 32 H 1.08002 * 120.03426 * 0.04732 * 16 15 14 33 33 H 1.08000 * 119.96353 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.46989 * 240.00028 * 19 18 17 35 35 H 1.08997 * 109.47379 * 120.00226 * 19 18 17 36 36 H 0.96693 * 114.00017 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.46916 * 300.00267 * 22 21 18 38 38 H 1.09000 * 109.47157 * 59.99799 * 22 21 18 39 39 H 0.96703 * 113.99539 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.03159 * 180.23125 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 7 2.2032 -3.6127 -0.0005 12 6 1.8370 -4.8122 -0.4938 13 8 0.7167 -4.9702 -0.9393 14 7 2.7127 -5.8368 -0.4934 15 6 2.3723 -7.0485 -1.1051 16 6 1.5609 -7.0552 -2.2324 17 6 1.2264 -8.2527 -2.8334 18 6 1.6979 -9.4444 -2.3138 19 6 1.3303 -10.7494 -2.9718 20 8 0.4945 -10.4939 -4.1024 21 6 2.5013 -9.4416 -1.1886 22 6 3.0082 -10.7428 -0.6222 23 8 3.8114 -10.4801 0.5301 24 6 2.8443 -8.2467 -0.5861 25 6 0.3719 -2.5805 1.2490 26 9 1.1767 -2.5066 2.3910 27 9 -0.5371 -1.5172 1.2496 28 9 -0.3279 -3.7918 1.2487 29 1 -0.4850 0.8401 0.0004 30 1 3.0969 -3.4865 0.3545 31 1 3.5789 -5.7343 -0.0690 32 1 1.1924 -6.1249 -2.6386 33 1 0.5952 -8.2585 -3.7098 34 1 0.7954 -11.3775 -2.2595 35 1 2.2366 -11.2600 -3.2975 36 1 0.2183 -11.2907 -4.5754 37 1 2.1626 -11.3705 -0.3408 38 1 3.6081 -11.2568 -1.3733 39 1 4.1723 -11.2743 0.9473 40 1 3.4750 -8.2449 0.2906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414509115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:34 Heat of formation + Delta-G solvation = -231.936125 kcal Electronic energy + Delta-G solvation = -31139.965420 eV Core-core repulsion = 26119.819543 eV Total energy + Delta-G solvation = -5020.145877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.32920 -45.98173 -45.59713 -40.38556 -39.07983 -37.05612 -36.74146 -34.92879 -34.24740 -32.65150 -31.48230 -30.50281 -28.23126 -26.51663 -25.28153 -24.55619 -22.30492 -21.97607 -20.82077 -19.96260 -18.59098 -17.89361 -17.29737 -17.15614 -16.81045 -16.68377 -16.59063 -15.89715 -15.66602 -15.51018 -14.98632 -14.76482 -14.72236 -14.29935 -14.06003 -13.89348 -13.74563 -13.22471 -12.89878 -12.70323 -12.52047 -12.43099 -12.37780 -12.28104 -12.10035 -11.97826 -11.81057 -11.29116 -11.18019 -11.05409 -10.90416 -10.85342 -10.67116 -10.45176 -10.40870 -9.85978 -9.68101 -9.53673 -8.74864 -8.61274 -8.34521 -7.74101 -6.24980 -4.49104 1.36800 1.53013 3.01718 3.17513 3.25253 3.28962 3.51999 3.90719 3.97566 3.99605 4.17907 4.54282 4.68494 4.70907 4.91485 4.92522 4.93606 5.03342 5.04072 5.19346 5.28900 5.59553 5.75098 5.83563 5.85326 5.88122 6.12913 6.21045 6.38126 6.49149 6.66395 6.72688 6.84428 7.12048 7.23317 7.31383 7.34454 7.39052 7.59013 7.62859 8.44622 8.54305 9.03641 9.19708 10.66680 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.002627 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.700015 B =10657.322923 C =10952.076644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.262 3.738 10 H 0.087 0.913 11 N -0.720 5.720 12 C 0.697 3.303 13 O -0.564 6.564 14 N -0.692 5.692 15 C 0.181 3.819 16 C -0.121 4.121 17 C -0.073 4.073 18 C -0.120 4.120 19 C 0.123 3.877 20 O -0.566 6.566 21 C -0.074 4.074 22 C 0.121 3.879 23 O -0.566 6.566 24 C -0.130 4.130 25 C 0.415 3.585 26 F -0.210 7.210 27 F -0.137 7.137 28 F -0.216 7.216 29 H 0.268 0.732 30 H 0.396 0.604 31 H 0.404 0.596 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.380 0.620 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.381 0.619 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.276 -20.582 -3.044 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.589 4.589 8 H 0.096 0.904 9 C 0.156 3.844 10 H 0.105 0.895 11 N -0.372 5.372 12 C 0.397 3.603 13 O -0.440 6.440 14 N -0.339 5.339 15 C 0.085 3.915 16 C -0.142 4.142 17 C -0.092 4.092 18 C -0.121 4.121 19 C 0.046 3.954 20 O -0.371 6.371 21 C -0.075 4.075 22 C 0.043 3.957 23 O -0.372 6.372 24 C -0.151 4.151 25 C 0.359 3.641 26 F -0.192 7.192 27 F -0.118 7.118 28 F -0.198 7.198 29 H 0.079 0.921 30 H 0.230 0.770 31 H 0.239 0.761 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.227 0.773 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.228 0.772 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.950 -19.221 -3.366 20.401 hybrid contribution 1.095 -0.212 0.795 1.370 sum 7.045 -19.434 -2.571 20.830 Atomic orbital electron populations 1.70415 1.05851 1.27316 1.43571 1.25082 0.95166 1.00124 0.94034 0.86141 0.79769 0.81907 0.77896 1.19409 1.20538 1.20558 1.20905 0.93844 0.87981 1.56214 0.90364 1.19673 0.88199 0.84789 0.91772 0.89526 1.45303 1.17561 1.09285 1.65098 1.16068 0.84164 0.80501 0.79553 1.90945 1.19018 1.82320 1.51716 1.42733 1.19456 1.11468 1.60241 1.17569 0.97508 0.84457 0.91942 1.21341 0.99124 0.99569 0.94145 1.20773 0.98284 0.90544 0.99605 1.19251 1.01163 0.94937 0.96785 1.20798 0.93107 0.94131 0.87362 1.86498 1.70195 1.36493 1.43958 1.19020 0.98874 0.94133 0.95447 1.20845 0.93518 0.94031 0.87276 1.86491 1.69769 1.36602 1.44325 1.20535 1.03918 0.89749 1.00898 1.23162 0.80935 0.72869 0.87150 1.92986 1.74408 1.96193 1.55597 1.93403 1.68383 1.53801 1.96197 1.93081 1.81421 1.48330 1.96958 0.92119 0.76991 0.76071 0.84193 0.84775 0.92723 0.92743 0.77300 0.92380 0.92428 0.77205 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.98 9.50 55.43 0.53 -22.45 16 2 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 3 Si 0.92 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.55 -14.02 8.46 -34.44 -0.29 -14.31 16 8 H 0.08 1.87 7.74 -52.48 -0.41 1.47 16 9 C 0.26 6.52 2.21 -69.08 -0.15 6.36 16 10 H 0.09 2.41 7.58 -51.93 -0.39 2.02 16 11 N -0.72 -14.78 4.99 -59.81 -0.30 -15.07 16 12 C 0.70 14.23 7.83 -86.92 -0.68 13.55 16 13 O -0.56 -13.63 12.60 5.29 0.07 -13.56 16 14 N -0.69 -11.11 5.35 -14.22 -0.08 -11.19 16 15 C 0.18 2.92 6.28 -83.69 -0.53 2.40 16 16 C -0.12 -2.05 8.65 -39.39 -0.34 -2.39 16 17 C -0.07 -1.08 9.37 -39.61 -0.37 -1.46 16 18 C -0.12 -1.50 5.88 -104.59 -0.62 -2.12 16 19 C 0.12 1.07 6.42 36.00 0.23 1.31 16 20 O -0.57 -5.20 12.13 -35.23 -0.43 -5.63 16 21 C -0.07 -0.90 5.88 -104.65 -0.62 -1.52 16 22 C 0.12 1.01 6.42 36.00 0.23 1.24 16 23 O -0.57 -4.91 12.14 -35.23 -0.43 -5.34 16 24 C -0.13 -1.82 9.29 -39.39 -0.37 -2.19 16 25 C 0.42 10.79 2.81 37.16 0.10 10.90 16 26 F -0.21 -5.24 16.94 2.25 0.04 -5.20 16 27 F -0.14 -3.82 12.91 2.25 0.03 -3.79 16 28 F -0.22 -5.66 15.68 2.25 0.04 -5.62 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.40 6.89 8.56 -40.82 -0.35 6.54 16 31 H 0.40 5.05 8.83 -40.82 -0.36 4.69 16 32 H 0.14 2.65 6.41 -52.49 -0.34 2.31 16 33 H 0.13 1.91 7.00 -52.49 -0.37 1.55 16 34 H 0.05 0.39 7.99 -51.93 -0.41 -0.02 16 35 H 0.05 0.36 8.01 -51.93 -0.42 -0.05 16 36 H 0.38 1.50 9.12 45.56 0.42 1.91 16 37 H 0.06 0.40 7.99 -51.93 -0.41 -0.01 16 38 H 0.06 0.36 8.01 -51.93 -0.42 -0.05 16 39 H 0.38 1.35 9.12 45.56 0.42 1.76 16 40 H 0.13 1.77 7.00 -52.49 -0.37 1.41 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -34.52 349.46 -6.32 -40.84 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -2.55 Total: 13.37 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: -3.49 Total: 13.36 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.15 Total: -48.72 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.79 Total: -24.53 kcal Atomic # 9 Polarization: -14.72 SS G_CDS: 0.10 Total: -14.62 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.52 -6.32 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414509115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.094 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds