Wall clock time and date at job start Wed Apr 1 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48500 * 109.47431 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47209 * 300.00258 * 3 2 1 6 6 H 1.48503 * 109.46752 * 60.00055 * 3 2 1 7 7 C 1.37875 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00520 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00179 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46718 * 60.00106 * 9 7 2 11 11 N 1.46500 * 109.47306 * 180.02562 * 9 7 2 12 12 C 1.34776 * 119.99569 * 205.00081 * 11 9 7 13 13 O 1.21589 * 120.00456 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99712 * 180.02562 * 12 11 9 15 15 C 1.39944 * 120.00323 * 185.31473 * 14 12 11 16 16 C 1.38890 * 120.06771 * 33.25998 * 15 14 12 17 17 C 1.38097 * 119.93012 * 180.02562 * 16 15 14 18 18 C 1.38300 * 120.07061 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.93147 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.47047 * 359.97438 * 19 18 17 21 21 C 1.38262 * 120.14184 * 0.23270 * 18 17 16 22 22 C 1.50694 * 119.96924 * 179.74374 * 21 18 17 23 23 O 1.42899 * 109.47159 * 179.97438 * 22 21 18 24 24 C 1.38142 * 120.06494 * 359.48968 * 21 18 17 25 25 C 1.53000 * 109.47091 * 300.00325 * 9 7 2 26 26 F 1.39903 * 109.47084 * 299.99724 * 25 9 7 27 27 F 1.39899 * 109.47150 * 59.99366 * 25 9 7 28 28 F 1.39894 * 109.47232 * 179.97438 * 25 9 7 29 29 H 0.97002 * 119.99791 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99832 * 25.00151 * 11 9 7 31 31 H 0.97002 * 119.99899 * 5.31580 * 14 12 11 32 32 H 1.08002 * 120.03426 * 0.04732 * 16 15 14 33 33 H 1.08000 * 119.96353 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.46989 * 240.00028 * 19 18 17 35 35 H 1.08997 * 109.47379 * 120.00226 * 19 18 17 36 36 H 0.96693 * 114.00017 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.46916 * 300.00267 * 22 21 18 38 38 H 1.09000 * 109.47157 * 59.99799 * 22 21 18 39 39 H 0.96703 * 113.99539 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.03159 * 180.23125 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 7 2.2032 -3.6127 -0.0005 12 6 1.8370 -4.8122 -0.4938 13 8 0.7167 -4.9702 -0.9393 14 7 2.7127 -5.8368 -0.4934 15 6 2.3723 -7.0485 -1.1051 16 6 1.5609 -7.0552 -2.2324 17 6 1.2264 -8.2527 -2.8334 18 6 1.6979 -9.4444 -2.3138 19 6 1.3303 -10.7494 -2.9718 20 8 0.4945 -10.4939 -4.1024 21 6 2.5013 -9.4416 -1.1886 22 6 3.0082 -10.7428 -0.6222 23 8 3.8114 -10.4801 0.5301 24 6 2.8443 -8.2467 -0.5861 25 6 0.3719 -2.5805 1.2490 26 9 1.1767 -2.5066 2.3910 27 9 -0.5371 -1.5172 1.2496 28 9 -0.3279 -3.7918 1.2487 29 1 -0.4850 0.8401 0.0004 30 1 3.0969 -3.4865 0.3545 31 1 3.5789 -5.7343 -0.0690 32 1 1.1924 -6.1249 -2.6386 33 1 0.5952 -8.2585 -3.7098 34 1 0.7954 -11.3775 -2.2595 35 1 2.2366 -11.2600 -3.2975 36 1 0.2183 -11.2907 -4.5754 37 1 2.1626 -11.3705 -0.3408 38 1 3.6081 -11.2568 -1.3733 39 1 4.1723 -11.2743 0.9473 40 1 3.4750 -8.2449 0.2906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414509115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:33 Heat of formation + Delta-G solvation = -261.034093 kcal Electronic energy + Delta-G solvation = -31141.227202 eV Core-core repulsion = 26119.819543 eV Total energy + Delta-G solvation = -5021.407659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.43708 -48.07261 -47.74536 -41.73796 -40.30316 -37.72672 -37.64032 -36.55280 -35.67881 -34.51208 -32.53963 -31.68632 -29.97672 -27.34759 -26.63061 -26.22423 -23.94178 -23.05002 -22.39895 -21.37168 -20.09112 -19.12215 -18.87885 -18.64213 -18.59213 -18.19783 -17.81806 -17.45553 -16.94070 -16.61182 -16.37574 -16.21131 -15.82949 -15.40983 -15.28040 -15.04083 -14.97504 -14.94919 -14.69541 -14.52845 -14.47082 -14.31363 -14.05226 -13.90928 -13.71418 -13.58067 -13.06781 -12.84632 -12.73925 -12.66415 -12.26799 -12.21970 -11.97664 -11.62939 -11.57672 -11.26742 -11.02679 -10.83202 -10.71599 -10.16442 -9.66942 -8.92126 -8.22846 -6.54088 0.26014 0.41904 1.44728 1.46571 1.53237 1.62101 1.97274 2.35624 2.51106 2.79463 2.92897 3.14613 3.31933 3.40964 3.75622 3.83958 3.91436 4.02286 4.10078 4.16270 4.30311 4.46980 4.51160 4.51954 4.62988 4.73255 4.83232 4.84716 5.05692 5.28304 5.32636 5.35155 5.50626 5.56499 5.62522 5.62826 6.02268 6.06744 6.51162 6.99677 7.00130 7.02160 7.16689 7.47634 8.70299 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.002627 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.700015 B =10657.322923 C =10952.076644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.015 3.985 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.561 4.561 8 H 0.094 0.906 9 C 0.271 3.729 10 H 0.049 0.951 11 N -0.712 5.712 12 C 0.695 3.305 13 O -0.607 6.607 14 N -0.673 5.673 15 C 0.154 3.846 16 C -0.148 4.148 17 C -0.087 4.087 18 C -0.115 4.115 19 C 0.123 3.877 20 O -0.592 6.592 21 C -0.073 4.073 22 C 0.123 3.877 23 O -0.589 6.589 24 C -0.129 4.129 25 C 0.412 3.588 26 F -0.202 7.202 27 F -0.150 7.150 28 F -0.220 7.220 29 H 0.269 0.731 30 H 0.413 0.587 31 H 0.422 0.578 32 H 0.106 0.894 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.402 0.598 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.403 0.597 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.514 -23.001 -2.625 25.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.191 4.191 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.598 4.598 8 H 0.112 0.888 9 C 0.163 3.837 10 H 0.066 0.934 11 N -0.366 5.366 12 C 0.396 3.604 13 O -0.485 6.485 14 N -0.322 5.322 15 C 0.059 3.941 16 C -0.169 4.169 17 C -0.106 4.106 18 C -0.116 4.116 19 C 0.046 3.954 20 O -0.401 6.401 21 C -0.074 4.074 22 C 0.046 3.954 23 O -0.398 6.398 24 C -0.150 4.150 25 C 0.356 3.644 26 F -0.184 7.184 27 F -0.131 7.131 28 F -0.202 7.202 29 H 0.079 0.921 30 H 0.250 0.750 31 H 0.260 0.740 32 H 0.124 0.876 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.253 0.747 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.254 0.746 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.259 -21.722 -2.940 23.425 hybrid contribution 0.378 0.349 0.632 0.815 sum 8.638 -21.373 -2.308 23.167 Atomic orbital electron populations 1.70544 1.07529 1.28181 1.44570 1.26018 0.95918 1.03735 0.93412 0.85073 0.79117 0.77262 0.77626 1.17799 1.20329 1.20636 1.21246 0.94620 0.88070 1.55832 0.88789 1.19251 0.88345 0.86358 0.89758 0.93370 1.44998 1.17625 1.08565 1.65448 1.16195 0.84157 0.81029 0.79035 1.90918 1.21179 1.83066 1.53367 1.42415 1.19410 1.10571 1.59767 1.17750 0.98953 0.84952 0.92444 1.21189 1.00845 0.99204 0.95631 1.20830 0.98903 0.90998 0.99846 1.19728 0.99568 0.95830 0.96481 1.20940 0.94748 0.91942 0.87735 1.86447 1.70507 1.38704 1.44446 1.19564 0.97586 0.95483 0.94769 1.20946 0.94820 0.91647 0.88029 1.86423 1.70008 1.38777 1.44609 1.20712 1.03655 0.89505 1.01133 1.23351 0.80901 0.72360 0.87816 1.92985 1.74082 1.96146 1.55218 1.93376 1.68950 1.54463 1.96312 1.93069 1.81603 1.48507 1.97014 0.92102 0.75047 0.73987 0.87615 0.85136 0.90310 0.89632 0.74685 0.90144 0.89424 0.74557 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.00 9.50 21.45 0.20 -48.79 16 2 C 0.01 0.76 5.20 84.65 0.44 1.20 16 3 Si 0.99 40.78 29.54 68.60 2.03 42.81 16 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.56 -28.57 8.46 25.60 0.22 -28.36 16 8 H 0.09 4.39 7.74 -2.91 -0.02 4.37 16 9 C 0.27 13.90 2.21 44.25 0.10 13.99 16 10 H 0.05 2.86 7.58 -2.39 -0.02 2.84 16 11 N -0.71 -29.85 4.99 -461.40 -2.30 -32.15 16 12 C 0.70 29.53 7.83 179.05 1.40 30.93 16 13 O -0.61 -31.13 12.60 -3.99 -0.05 -31.19 16 14 N -0.67 -22.07 5.35 -317.18 -1.70 -23.77 16 15 C 0.15 5.08 6.28 38.15 0.24 5.32 16 16 C -0.15 -5.33 8.65 22.39 0.19 -5.14 16 17 C -0.09 -2.64 9.37 22.25 0.21 -2.43 16 18 C -0.12 -2.66 5.88 -19.84 -0.12 -2.78 16 19 C 0.12 1.70 6.42 71.23 0.46 2.16 16 20 O -0.59 -9.54 12.13 -148.98 -1.81 -11.35 16 21 C -0.07 -1.61 5.88 -19.88 -0.12 -1.72 16 22 C 0.12 1.51 6.42 71.23 0.46 1.97 16 23 O -0.59 -7.99 12.14 -148.98 -1.81 -9.80 16 24 C -0.13 -3.48 9.29 22.39 0.21 -3.27 16 25 C 0.41 21.97 2.81 71.98 0.20 22.18 16 26 F -0.20 -10.12 16.94 44.97 0.76 -9.36 16 27 F -0.15 -8.63 12.91 44.97 0.58 -8.05 16 28 F -0.22 -11.91 15.68 44.97 0.70 -11.20 16 29 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.41 14.22 8.56 -92.71 -0.79 13.43 16 31 H 0.42 10.38 8.83 -92.71 -0.82 9.56 16 32 H 0.11 4.46 6.41 -2.91 -0.02 4.44 16 33 H 0.13 3.91 7.00 -2.91 -0.02 3.89 16 34 H 0.08 0.76 7.99 -2.39 -0.02 0.74 16 35 H 0.09 0.70 8.01 -2.39 -0.02 0.68 16 36 H 0.40 2.08 9.12 -74.06 -0.68 1.41 16 37 H 0.08 0.69 7.99 -2.39 -0.02 0.67 16 38 H 0.09 0.61 8.01 -2.39 -0.02 0.60 16 39 H 0.40 1.24 9.12 -74.06 -0.68 0.56 16 40 H 0.14 3.54 7.00 -2.91 -0.02 3.52 16 Total: -1.00 -77.96 349.46 -1.29 -79.25 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -1.79 Total: 29.56 kcal Atomic # 6 Polarization: 30.16 SS G_CDS: 3.89 Total: 34.05 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -3.79 Total: -104.71 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -3.67 Total: -52.33 kcal Atomic # 9 Polarization: -30.66 SS G_CDS: 2.05 Total: -28.61 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -77.96 -1.29 -79.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414509115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.786 kcal (2) G-P(sol) polarization free energy of solvation -77.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -259.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds