Wall clock time and date at job start Wed Apr 1 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39921 * 120.46324 * 318.18130 * 3 2 1 5 5 N 1.31307 * 120.74500 * 180.23338 * 4 3 2 6 6 C 1.32815 * 121.81506 * 359.48254 * 5 4 3 7 7 C 1.48135 * 119.57950 * 180.24510 * 6 5 4 8 8 O 1.21518 * 119.99707 * 180.26966 * 7 6 5 9 9 N 1.34778 * 119.99626 * 0.27159 * 7 6 5 10 10 C 1.46499 * 119.99535 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46657 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.49534 * 305.05877 * 11 10 9 13 13 C 1.53050 * 109.49333 * 184.99933 * 11 10 9 14 14 C 1.53040 * 109.53770 * 178.68263 * 13 11 10 15 15 C 1.53189 * 109.31390 * 61.36163 * 14 13 11 16 16 N 1.46929 * 108.77577 * 305.36496 * 15 14 13 17 17 C 1.36939 * 120.63466 * 233.58433 * 16 15 14 18 18 H 1.07995 * 120.00141 * 151.83747 * 17 16 15 19 19 C 1.38816 * 119.99687 * 331.83611 * 17 16 15 20 20 N 1.31618 * 120.00373 * 343.07582 * 19 17 16 21 21 Si 1.86803 * 119.99556 * 163.07105 * 19 17 16 22 22 H 1.48495 * 109.47455 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46797 * 120.00365 * 21 19 17 24 24 H 1.48495 * 109.47037 * 240.00031 * 21 19 17 25 25 C 1.46930 * 118.73792 * 53.61295 * 16 15 14 26 26 C 1.39475 * 120.84254 * 0.51974 * 6 5 4 27 27 Cl 1.73601 * 120.41297 * 179.76826 * 26 6 5 28 28 C 1.38566 * 119.17132 * 359.74514 * 26 6 5 29 29 H 1.08009 * 119.63054 * 359.96168 * 4 3 2 30 30 H 0.97001 * 120.00247 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.46929 * 299.99863 * 10 9 7 32 32 H 1.08994 * 109.47631 * 59.99901 * 10 9 7 33 33 H 1.09000 * 109.45591 * 298.69985 * 13 11 10 34 34 H 1.09002 * 109.46359 * 58.67364 * 13 11 10 35 35 H 1.08993 * 109.49720 * 181.31615 * 14 13 11 36 36 H 1.09000 * 109.49563 * 301.37930 * 14 13 11 37 37 H 1.09000 * 109.58805 * 65.15204 * 15 14 13 38 38 H 1.09003 * 109.59008 * 185.58254 * 15 14 13 39 39 H 0.96998 * 120.00197 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.58484 * 186.60640 * 25 16 15 41 41 H 1.08995 * 109.58875 * 66.17346 * 25 16 15 42 42 H 1.08001 * 120.83013 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2778 -0.8979 0.8042 5 7 4.5908 -0.8990 0.8119 6 6 5.2962 -0.0638 0.0577 7 6 6.7761 -0.1116 0.1011 8 8 7.4290 0.6524 -0.5821 9 7 7.3984 -1.0025 0.8984 10 6 8.8620 -1.0494 0.9418 11 6 9.3085 -2.1404 1.9171 12 1 8.8495 -1.9682 2.8906 13 6 10.8322 -2.1074 2.0577 14 6 11.2771 -3.1767 3.0580 15 6 10.8695 -4.5585 2.5373 16 7 9.4262 -4.5532 2.2619 17 6 8.6072 -5.5023 2.8128 18 1 7.5691 -5.2744 3.0043 19 6 9.1113 -6.7574 3.1251 20 7 10.2524 -7.1565 2.6046 21 14 8.1701 -7.8799 4.2843 22 1 6.9262 -7.2017 4.7288 23 1 7.8218 -9.1396 3.5793 24 1 9.0141 -8.1911 5.4658 25 6 8.8786 -3.5105 1.3834 26 6 4.6613 0.8616 -0.7705 27 17 5.5943 1.9521 -1.7472 28 6 3.2765 0.8993 -0.8043 29 1 2.7396 -1.5954 1.4289 30 1 6.8772 -1.6121 1.4440 31 1 9.2480 -1.2716 -0.0530 32 1 9.2468 -0.0851 1.2738 33 1 11.2906 -2.3036 1.0885 34 1 11.1428 -1.1253 2.4142 35 1 12.3600 -3.1371 3.1753 36 1 10.8000 -2.9950 4.0211 37 1 11.4157 -4.7793 1.6203 38 1 11.0949 -5.3139 3.2902 39 1 10.6049 -8.0334 2.8232 40 1 7.7905 -3.5743 1.3750 41 1 9.2625 -3.6457 0.3723 42 1 2.7573 1.6052 -1.4355 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457668770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:31 Heat of formation + Delta-G solvation = 50.083615 kcal Electronic energy + Delta-G solvation = -27121.146503 eV Core-core repulsion = 23128.088577 eV Total energy + Delta-G solvation = -3993.057927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.27023 -39.41673 -37.82682 -37.19883 -36.95996 -34.92576 -33.55607 -32.90775 -32.04577 -30.46439 -30.33381 -26.75648 -25.32636 -24.90001 -24.36887 -22.17709 -21.35036 -20.78554 -19.87764 -19.24153 -18.28817 -17.70385 -16.67112 -15.86736 -15.82703 -15.69458 -15.20528 -14.98663 -14.79153 -14.28181 -14.10182 -13.90407 -13.74191 -13.59146 -13.48334 -13.41999 -13.05439 -12.79921 -12.45082 -12.37642 -12.24770 -12.18620 -11.72033 -11.29819 -11.02517 -10.73603 -10.71292 -10.50645 -10.46573 -10.22116 -10.18834 -9.94080 -9.77879 -9.61129 -9.55686 -9.42818 -8.97864 -8.47863 -6.68081 -5.80016 -3.23000 -0.47591 0.30367 1.48106 1.95389 2.06035 2.75203 2.80908 3.09437 3.28968 3.35818 3.43991 3.45644 3.60794 3.91052 4.07150 4.38764 4.47175 4.49873 4.96228 5.06516 5.10523 5.28108 5.41877 5.45099 5.52865 5.60792 5.80346 5.90130 5.97729 6.21526 6.29145 6.35843 6.42151 6.59054 6.68321 6.74928 6.76800 6.84653 6.93235 6.95721 7.39132 7.47685 7.66692 7.78558 8.05249 8.43687 9.19984 9.83436 10.40165 11.28296 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.002729 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.438879 B =10258.692450 C =12458.063045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.254 3.746 3 C -0.048 4.048 4 C 0.158 3.842 5 N -0.436 5.436 6 C 0.124 3.876 7 C 0.557 3.443 8 O -0.512 6.512 9 N -0.697 5.697 10 C 0.126 3.874 11 C -0.118 4.118 12 H 0.075 0.925 13 C -0.099 4.099 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.153 3.847 26 C -0.046 4.046 27 Cl 0.001 6.999 28 C -0.027 4.027 29 H 0.183 0.817 30 H 0.414 0.586 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.086 0.914 39 H 0.253 0.747 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.029 17.567 -5.311 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.064 5.064 2 C -0.063 4.063 3 C -0.054 4.054 4 C -0.005 4.005 5 N -0.146 5.146 6 C -0.016 4.016 7 C 0.340 3.660 8 O -0.387 6.387 9 N -0.348 5.348 10 C 0.002 3.998 11 C -0.139 4.139 12 H 0.093 0.907 13 C -0.137 4.137 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.313 5.313 17 C -0.382 4.382 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.026 3.974 26 C -0.076 4.076 27 Cl 0.030 6.970 28 C -0.055 4.055 29 H 0.200 0.800 30 H 0.251 0.749 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.625 17.442 -5.332 21.108 hybrid contribution -0.710 -0.336 0.236 0.820 sum -11.335 17.106 -5.096 21.144 Atomic orbital electron populations 1.81330 1.11553 1.06714 1.06850 1.25109 0.91916 0.94632 0.94612 1.17036 0.86076 1.00494 1.01825 1.23167 0.89053 0.94450 0.93863 1.67896 1.08004 1.20168 1.18509 1.21521 0.95969 0.91584 0.92553 1.17643 0.84988 0.82039 0.81351 1.90898 1.65235 1.40488 1.42063 1.45954 1.08541 1.36564 1.43746 1.21583 0.77919 0.99438 1.00829 1.21968 0.97152 0.96175 0.98589 0.90710 1.21342 0.94114 0.98329 0.99963 1.22169 0.98924 0.98534 0.98467 1.20799 0.83628 0.92457 0.98817 1.44043 1.04065 1.30130 1.53103 1.19210 0.93809 0.90797 1.34363 0.91619 1.25046 0.97804 0.96406 1.00368 1.70044 1.21248 1.19311 1.44009 0.86252 0.79319 0.80612 0.80764 1.20216 1.21773 1.21599 1.20908 0.96896 0.86912 0.92639 1.21801 0.92410 0.96034 0.97378 1.98464 1.71779 1.59783 1.66958 1.21611 0.91560 0.96518 0.95842 0.79991 0.74899 0.91095 0.91490 0.92435 0.93402 0.93196 0.92737 0.96444 0.89591 0.93696 0.92973 0.96359 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -3.79 18.54 41.84 0.78 -3.01 16 2 C 0.25 1.84 15.36 -22.47 -0.35 1.49 16 3 C -0.05 -0.29 5.75 -106.73 -0.61 -0.91 16 4 C 0.16 1.04 10.91 -17.15 -0.19 0.85 16 5 N -0.44 -4.04 9.51 -9.45 -0.09 -4.13 16 6 C 0.12 1.28 6.75 -82.92 -0.56 0.72 16 7 C 0.56 7.08 7.80 -12.20 -0.10 6.99 16 8 O -0.51 -7.51 13.91 5.35 0.07 -7.43 16 9 N -0.70 -8.78 5.32 -61.16 -0.33 -9.11 16 10 C 0.13 1.67 5.07 -4.04 -0.02 1.65 16 11 C -0.12 -1.83 2.37 -90.49 -0.21 -2.04 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.10 -1.54 5.17 -26.69 -0.14 -1.68 16 14 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 15 C 0.17 3.88 5.30 -3.71 -0.02 3.86 16 16 N -0.59 -14.11 2.99 -172.32 -0.52 -14.62 16 17 C -0.25 -6.65 9.58 -15.06 -0.14 -6.79 16 18 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.67 11.20 55.49 0.62 -25.05 16 21 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 C 0.15 2.96 5.60 -3.71 -0.02 2.94 16 26 C -0.05 -0.40 6.36 -39.00 -0.25 -0.65 16 27 Cl 0.00 0.01 26.00 -51.86 -1.35 -1.34 16 28 C -0.03 -0.16 9.70 -38.85 -0.38 -0.54 16 29 H 0.18 0.73 8.06 -52.48 -0.42 0.31 16 30 H 0.41 5.06 7.03 -40.82 -0.29 4.77 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.05 0.98 7.15 -51.93 -0.37 0.60 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -31.01 370.93 -8.65 -39.66 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.17 Total: 0.20 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -3.23 Total: 3.14 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.47 Total: -55.92 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.07 Total: -7.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.35 Total: -1.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.01 -8.65 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457668770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.741 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds