Wall clock time and date at job start Wed Apr 1 2020 05:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39921 * 120.46324 * 318.18130 * 3 2 1 5 5 N 1.31307 * 120.74500 * 180.23338 * 4 3 2 6 6 C 1.32815 * 121.81506 * 359.48254 * 5 4 3 7 7 C 1.48135 * 119.57950 * 180.24510 * 6 5 4 8 8 O 1.21518 * 119.99707 * 180.26966 * 7 6 5 9 9 N 1.34778 * 119.99626 * 0.27159 * 7 6 5 10 10 C 1.46499 * 119.99535 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46657 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.49534 * 305.05877 * 11 10 9 13 13 C 1.53050 * 109.49333 * 184.99933 * 11 10 9 14 14 C 1.53040 * 109.53770 * 178.68263 * 13 11 10 15 15 C 1.53189 * 109.31390 * 61.36163 * 14 13 11 16 16 N 1.46929 * 108.77577 * 305.36496 * 15 14 13 17 17 C 1.36939 * 120.63466 * 233.58433 * 16 15 14 18 18 H 1.07995 * 120.00141 * 151.83747 * 17 16 15 19 19 C 1.38816 * 119.99687 * 331.83611 * 17 16 15 20 20 N 1.31618 * 120.00373 * 343.07582 * 19 17 16 21 21 Si 1.86803 * 119.99556 * 163.07105 * 19 17 16 22 22 H 1.48495 * 109.47455 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46797 * 120.00365 * 21 19 17 24 24 H 1.48495 * 109.47037 * 240.00031 * 21 19 17 25 25 C 1.46930 * 118.73792 * 53.61295 * 16 15 14 26 26 C 1.39475 * 120.84254 * 0.51974 * 6 5 4 27 27 Cl 1.73601 * 120.41297 * 179.76826 * 26 6 5 28 28 C 1.38566 * 119.17132 * 359.74514 * 26 6 5 29 29 H 1.08009 * 119.63054 * 359.96168 * 4 3 2 30 30 H 0.97001 * 120.00247 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.46929 * 299.99863 * 10 9 7 32 32 H 1.08994 * 109.47631 * 59.99901 * 10 9 7 33 33 H 1.09000 * 109.45591 * 298.69985 * 13 11 10 34 34 H 1.09002 * 109.46359 * 58.67364 * 13 11 10 35 35 H 1.08993 * 109.49720 * 181.31615 * 14 13 11 36 36 H 1.09000 * 109.49563 * 301.37930 * 14 13 11 37 37 H 1.09000 * 109.58805 * 65.15204 * 15 14 13 38 38 H 1.09003 * 109.59008 * 185.58254 * 15 14 13 39 39 H 0.96998 * 120.00197 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.58484 * 186.60640 * 25 16 15 41 41 H 1.08995 * 109.58875 * 66.17346 * 25 16 15 42 42 H 1.08001 * 120.83013 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2778 -0.8979 0.8042 5 7 4.5908 -0.8990 0.8119 6 6 5.2962 -0.0638 0.0577 7 6 6.7761 -0.1116 0.1011 8 8 7.4290 0.6524 -0.5821 9 7 7.3984 -1.0025 0.8984 10 6 8.8620 -1.0494 0.9418 11 6 9.3085 -2.1404 1.9171 12 1 8.8495 -1.9682 2.8906 13 6 10.8322 -2.1074 2.0577 14 6 11.2771 -3.1767 3.0580 15 6 10.8695 -4.5585 2.5373 16 7 9.4262 -4.5532 2.2619 17 6 8.6072 -5.5023 2.8128 18 1 7.5691 -5.2744 3.0043 19 6 9.1113 -6.7574 3.1251 20 7 10.2524 -7.1565 2.6046 21 14 8.1701 -7.8799 4.2843 22 1 6.9262 -7.2017 4.7288 23 1 7.8218 -9.1396 3.5793 24 1 9.0141 -8.1911 5.4658 25 6 8.8786 -3.5105 1.3834 26 6 4.6613 0.8616 -0.7705 27 17 5.5943 1.9521 -1.7472 28 6 3.2765 0.8993 -0.8043 29 1 2.7396 -1.5954 1.4289 30 1 6.8772 -1.6121 1.4440 31 1 9.2480 -1.2716 -0.0530 32 1 9.2468 -0.0851 1.2738 33 1 11.2906 -2.3036 1.0885 34 1 11.1428 -1.1253 2.4142 35 1 12.3600 -3.1371 3.1753 36 1 10.8000 -2.9950 4.0211 37 1 11.4157 -4.7793 1.6203 38 1 11.0949 -5.3139 3.2902 39 1 10.6049 -8.0334 2.8232 40 1 7.7905 -3.5743 1.3750 41 1 9.2625 -3.6457 0.3723 42 1 2.7573 1.6052 -1.4355 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457668770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:30 Heat of formation + Delta-G solvation = 31.260035 kcal Electronic energy + Delta-G solvation = -27121.962755 eV Core-core repulsion = 23128.088577 eV Total energy + Delta-G solvation = -3993.874179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97024 -40.38922 -39.24882 -37.90187 -37.64831 -36.24253 -34.72453 -34.00603 -32.74803 -32.24936 -31.74609 -27.74171 -27.17208 -25.95350 -24.98508 -23.79065 -22.69796 -21.87475 -20.70474 -20.49007 -19.24417 -18.58080 -18.33355 -16.86040 -16.74558 -16.65777 -16.42892 -16.01088 -15.94988 -15.58458 -15.25852 -14.98161 -14.71799 -14.59044 -14.46823 -14.37152 -14.26904 -13.97079 -13.73155 -13.66897 -13.46305 -13.13669 -12.96465 -12.86803 -12.55846 -12.42665 -12.19874 -11.91649 -11.77259 -11.52871 -11.40789 -11.23852 -11.07574 -11.04137 -10.56154 -10.50324 -10.31963 -9.96970 -8.63042 -7.82948 -5.28486 -1.12993 -0.25498 0.82175 1.23737 1.45785 1.48800 1.51191 1.61137 1.94571 2.01884 2.45216 2.54492 2.60042 2.93069 3.32078 3.35444 3.45762 3.64636 3.69304 3.94478 4.04296 4.07587 4.12230 4.34068 4.46393 4.59602 4.63410 4.66994 4.82448 4.93904 4.95545 4.99480 5.05816 5.16473 5.26738 5.38429 5.42189 5.50829 5.62286 5.71725 5.83203 6.14261 6.29008 6.43471 6.54842 7.09077 7.19406 7.91173 8.42847 9.23346 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.002729 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.438879 B =10258.692450 C =12458.063045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.283 3.717 3 C -0.034 4.034 4 C 0.165 3.835 5 N -0.452 5.452 6 C 0.108 3.892 7 C 0.555 3.445 8 O -0.536 6.536 9 N -0.698 5.698 10 C 0.137 3.863 11 C -0.101 4.101 12 H 0.076 0.924 13 C -0.097 4.097 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.609 5.609 17 C -0.256 4.256 18 H 0.071 0.929 19 C -0.053 4.053 20 N -0.937 5.937 21 Si 0.964 3.036 22 H -0.262 1.262 23 H -0.296 1.296 24 H -0.293 1.293 25 C 0.153 3.847 26 C -0.051 4.051 27 Cl -0.012 7.012 28 C -0.008 4.008 29 H 0.209 0.791 30 H 0.416 0.584 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.053 0.947 37 H -0.008 1.008 38 H 0.050 0.950 39 H 0.248 0.752 40 H 0.055 0.945 41 H 0.006 0.994 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 19.273 -4.859 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.033 4.033 3 C -0.040 4.040 4 C 0.002 3.998 5 N -0.163 5.163 6 C -0.031 4.031 7 C 0.339 3.661 8 O -0.412 6.412 9 N -0.349 5.349 10 C 0.013 3.987 11 C -0.121 4.121 12 H 0.095 0.905 13 C -0.135 4.135 14 C -0.169 4.169 15 C 0.047 3.953 16 N -0.332 5.332 17 C -0.387 4.387 18 H 0.089 0.911 19 C -0.248 4.248 20 N -0.584 5.584 21 Si 0.792 3.208 22 H -0.186 1.186 23 H -0.223 1.223 24 H -0.220 1.220 25 C 0.027 3.973 26 C -0.082 4.082 27 Cl 0.017 6.983 28 C -0.037 4.037 29 H 0.226 0.774 30 H 0.253 0.747 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.010 0.990 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.024 0.976 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -12.275 19.180 -4.881 23.289 hybrid contribution -0.259 -0.865 0.051 0.904 sum -12.534 18.315 -4.830 22.713 Atomic orbital electron populations 1.81381 1.12730 1.08056 1.08201 1.24976 0.91612 0.93369 0.93349 1.16928 0.85335 1.00241 1.01515 1.23594 0.88221 0.94419 0.93532 1.67883 1.09117 1.20379 1.18880 1.21210 0.94789 0.93003 0.94077 1.17970 0.86128 0.81358 0.80617 1.90880 1.66160 1.41309 1.42883 1.45924 1.08209 1.36794 1.43983 1.21387 0.78575 0.99015 0.99728 1.21721 0.97304 0.94204 0.98899 0.90539 1.21338 0.93889 0.98989 0.99238 1.21997 1.00119 0.96052 0.98771 1.20633 0.83384 0.94599 0.96720 1.44319 1.04195 1.30681 1.54041 1.19580 0.94316 0.91244 1.33538 0.91110 1.25794 0.98878 0.98013 1.02151 1.70202 1.23003 1.19468 1.45708 0.85255 0.78517 0.78505 0.78484 1.18631 1.22295 1.21988 1.21026 0.96971 0.87846 0.91460 1.21817 0.93177 0.95821 0.97365 1.98460 1.72354 1.60175 1.67305 1.21852 0.90416 0.96233 0.95171 0.77396 0.74686 0.91766 0.90089 0.92538 0.89964 0.91343 0.92848 0.98963 0.93180 0.94307 0.92628 0.97587 0.79222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.48 18.54 19.00 0.35 -7.13 16 2 C 0.28 3.34 15.36 88.33 1.36 4.69 16 3 C -0.03 -0.31 5.75 -21.23 -0.12 -0.44 16 4 C 0.17 1.72 10.91 85.18 0.93 2.65 16 5 N -0.45 -7.50 9.51 -183.81 -1.75 -9.25 16 6 C 0.11 2.07 6.75 41.92 0.28 2.36 16 7 C 0.56 13.53 7.80 86.87 0.68 14.21 16 8 O -0.54 -15.27 13.91 -3.77 -0.05 -15.33 16 9 N -0.70 -16.70 5.32 -465.69 -2.48 -19.18 16 10 C 0.14 3.40 5.07 86.38 0.44 3.84 16 11 C -0.10 -2.96 2.37 -10.71 -0.03 -2.98 16 12 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 13 C -0.10 -2.79 5.17 30.62 0.16 -2.63 16 14 C -0.13 -4.59 6.08 30.67 0.19 -4.40 16 15 C 0.17 8.13 5.30 86.36 0.46 8.58 16 16 N -0.61 -29.41 2.99 -699.09 -2.09 -31.50 16 17 C -0.26 -13.63 9.58 84.03 0.81 -12.82 16 18 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 19 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 20 N -0.94 -55.13 11.20 21.65 0.24 -54.89 16 21 Si 0.96 43.96 29.59 68.60 2.03 45.99 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 25 C 0.15 5.86 5.60 86.36 0.48 6.34 16 26 C -0.05 -0.80 6.36 22.65 0.14 -0.66 16 27 Cl -0.01 -0.23 26.00 -2.72 -0.07 -0.30 16 28 C -0.01 -0.08 9.70 22.74 0.22 0.14 16 29 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 30 H 0.42 9.64 7.03 -92.71 -0.65 8.99 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.05 2.70 6.06 -2.39 -0.01 2.69 16 39 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.06 2.06 7.15 -2.39 -0.02 2.04 16 41 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.19 0.69 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -68.90 370.93 3.02 -65.88 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.42 Total: 9.33 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 6.41 Total: 16.37 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -5.72 Total: -121.95 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.05 Total: -15.33 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.07 Total: -0.30 kcal Total: -68.90 3.02 -65.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457668770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.145 kcal (2) G-P(sol) polarization free energy of solvation -68.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds