Wall clock time and date at job start Wed Apr 1 2020 05:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47150 * 239.99912 * 3 2 1 5 5 H 1.48505 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47208 * 119.99855 * 3 2 1 7 7 C 1.38813 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99962 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00209 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.88610 * 308.88417 * 11 10 9 13 13 C 1.55153 * 111.00221 * 184.99818 * 11 10 9 14 14 C 1.54322 * 102.94263 * 206.42356 * 13 11 10 15 15 N 1.47025 * 107.26793 * 22.19732 * 14 13 11 16 16 C 1.34784 * 125.64722 * 181.00918 * 15 14 13 17 17 O 1.21792 * 119.99647 * 174.83752 * 16 15 14 18 18 C 1.41657 * 120.00272 * 354.84280 * 16 15 14 19 19 C 1.38711 * 126.80706 * 99.40310 * 18 16 15 20 20 Cl 1.73600 * 125.91467 * 0.03164 * 19 18 16 21 21 N 1.32418 * 108.17051 * 180.02562 * 19 18 16 22 22 C 1.33204 * 109.83264 * 0.02562 * 21 19 18 23 23 C 1.40651 * 131.77884 * 180.02562 * 22 21 19 24 24 C 1.36298 * 119.38700 * 179.20235 * 23 22 21 25 25 C 1.40167 * 119.60647 * 0.65391 * 24 23 22 26 26 C 1.35263 * 120.12305 * 359.57471 * 25 24 23 27 27 N 1.35953 * 120.63746 * 0.02562 * 26 25 24 28 28 C 1.47423 * 108.70679 * 1.05734 * 15 14 13 29 29 H 0.96996 * 120.00654 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99695 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47452 * 300.00194 * 10 9 7 32 32 H 1.09008 * 109.46994 * 59.99816 * 10 9 7 33 33 H 1.08991 * 110.72582 * 324.79161 * 13 11 10 34 34 H 1.09002 * 110.71605 * 87.89066 * 13 11 10 35 35 H 1.08995 * 109.88506 * 141.60873 * 14 13 11 36 36 H 1.08998 * 109.89042 * 262.78074 * 14 13 11 37 37 H 1.08008 * 120.30686 * 359.95791 * 23 22 21 38 38 H 1.07998 * 120.19687 * 180.20654 * 24 23 22 39 39 H 1.08001 * 119.94120 * 179.60872 * 25 24 23 40 40 H 1.07997 * 119.68637 * 180.02562 * 26 25 24 41 41 H 1.08993 * 110.36768 * 217.03700 * 28 15 14 42 42 H 1.08994 * 110.36705 * 94.70656 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3258 -4.6995 0.7941 13 6 1.7995 -6.1800 0.1274 14 6 0.8248 -7.1644 -0.5527 15 7 -0.0333 -6.3782 -1.4511 16 6 -1.0301 -6.8691 -2.2142 17 8 -1.7391 -6.1110 -2.8513 18 6 -1.2531 -8.2667 -2.2750 19 6 -2.2092 -8.9869 -1.5742 20 17 -3.3604 -8.3294 -0.4535 21 7 -2.0919 -10.2629 -1.9082 22 6 -1.1060 -10.4100 -2.7918 23 6 -0.5939 -11.5460 -3.4441 24 6 0.4312 -11.4028 -4.3309 25 6 0.9682 -10.1301 -4.5690 26 6 0.4651 -9.0504 -3.9283 27 7 -0.5627 -9.1835 -3.0484 28 6 0.3777 -4.9642 -1.3801 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7145 -0.8894 32 1 2.6848 -3.7144 0.8906 33 1 2.7523 -6.1537 -0.4011 34 1 1.9481 -6.4422 1.1749 35 1 1.3842 -7.9029 -1.1268 36 1 0.2146 -7.6623 0.2009 37 1 -1.0172 -12.5212 -3.2533 38 1 0.8322 -12.2658 -4.8416 39 1 1.7847 -10.0114 -5.2659 40 1 0.8839 -8.0730 -4.1174 41 1 -0.4938 -4.3123 -1.4407 42 1 1.0817 -4.7332 -2.1795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480676418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:24 Heat of formation + Delta-G solvation = 74.774588 kcal Electronic energy + Delta-G solvation = -27695.307165 eV Core-core repulsion = 23703.319919 eV Total energy + Delta-G solvation = -3991.987246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.38721 -40.04323 -38.12952 -37.58673 -36.79979 -34.73679 -34.24460 -32.36431 -30.80869 -30.56011 -29.73271 -28.67644 -25.89119 -24.46157 -24.00642 -23.23611 -22.52210 -22.01668 -20.33596 -19.94766 -18.25627 -17.57163 -17.24964 -16.97400 -16.77603 -16.29382 -16.00917 -15.47137 -15.21693 -14.81737 -14.62393 -14.39814 -13.73186 -13.46747 -13.22806 -13.18663 -13.04707 -12.89850 -12.59865 -12.41565 -12.25171 -11.86169 -11.64738 -11.60452 -11.54140 -11.32533 -10.88122 -10.77872 -10.69458 -10.65907 -10.49119 -10.19547 -10.05569 -9.69661 -9.21506 -8.89086 -8.72373 -8.37418 -6.94679 -5.76476 -3.06414 0.16288 0.49001 1.25138 1.76990 2.04033 2.50522 2.93553 3.01116 3.43839 3.48036 3.49662 3.67798 4.04385 4.15942 4.35553 4.40718 4.53573 4.56384 4.59374 4.81704 4.87748 4.93249 5.18703 5.24948 5.34545 5.42818 5.54019 5.54812 5.57655 5.62550 5.80885 5.84816 5.90508 5.91296 6.04112 6.14265 6.29465 6.33334 6.39163 6.65049 6.76905 7.09323 7.33006 7.68169 7.90526 8.41465 9.52679 10.09190 10.43407 11.45998 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.002518 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.541737 B =11118.472890 C =11892.703390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.166 3.834 11 C -0.105 4.105 12 H 0.088 0.912 13 C -0.123 4.123 14 C 0.103 3.897 15 N -0.605 5.605 16 C 0.607 3.393 17 O -0.509 6.509 18 C -0.098 4.098 19 C 0.165 3.835 20 Cl 0.024 6.976 21 N -0.481 5.481 22 C 0.249 3.751 23 C -0.080 4.080 24 C -0.089 4.089 25 C -0.132 4.132 26 C 0.062 3.938 27 N -0.328 5.328 28 C 0.114 3.886 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.022 0.978 32 H 0.025 0.975 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.088 0.912 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.825 -27.820 -6.927 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.038 3.962 11 C -0.124 4.124 12 H 0.106 0.894 13 C -0.162 4.162 14 C -0.020 4.020 15 N -0.339 5.339 16 C 0.392 3.608 17 O -0.383 6.383 18 C -0.215 4.215 19 C 0.000 4.000 20 Cl 0.052 6.948 21 N -0.202 5.202 22 C 0.008 3.992 23 C -0.100 4.100 24 C -0.113 4.113 25 C -0.152 4.152 26 C -0.061 4.061 27 N 0.001 4.999 28 C -0.007 4.007 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.176 0.824 38 H 0.168 0.832 39 H 0.177 0.823 40 H 0.184 0.816 41 H 0.107 0.893 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.910 -27.784 -6.913 28.694 hybrid contribution 0.479 1.573 -0.136 1.650 sum 2.389 -26.211 -7.049 27.247 Atomic orbital electron populations 1.69645 1.05111 1.25883 1.57275 1.24756 0.95509 0.97729 1.02826 0.86270 0.78520 0.83568 0.77808 1.21267 1.21672 1.21268 1.19147 0.90956 0.84113 1.43270 0.91228 1.42364 1.05914 0.99894 1.89572 1.20573 0.92653 0.84769 0.98212 1.22609 0.98568 0.94693 0.96575 0.89353 1.22640 0.97977 0.94209 1.01326 1.22038 0.92632 0.94559 0.92769 1.48626 1.32144 1.10605 1.42519 1.14992 0.80448 0.84931 0.80393 1.90939 1.44823 1.58827 1.43731 1.19489 1.03520 0.91485 1.06991 1.21170 0.93503 0.89342 0.95977 1.98430 1.56127 1.82963 1.57235 1.70146 1.17719 1.16959 1.15384 1.20748 0.94274 0.85722 0.98449 1.20365 0.97144 0.96309 0.96220 1.21172 0.95292 0.98025 0.96809 1.20958 1.01876 0.91306 1.01070 1.21782 0.89631 1.02340 0.92382 1.42473 1.22186 1.08540 1.26737 1.22454 1.00358 0.80051 0.97843 0.93365 0.78159 0.96069 0.95733 0.90229 0.89693 0.92236 0.91295 0.82388 0.83234 0.82347 0.81575 0.89310 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.13 5.55 -59.91 -0.33 -18.46 16 10 C 0.17 3.11 5.72 -4.04 -0.02 3.09 16 11 C -0.10 -1.58 3.05 -88.47 -0.27 -1.85 16 12 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.12 -1.35 6.42 -24.90 -0.16 -1.51 16 14 C 0.10 1.14 6.45 -3.06 -0.02 1.12 16 15 N -0.60 -8.58 3.33 -173.90 -0.58 -9.16 16 16 C 0.61 9.64 7.19 -14.95 -0.11 9.53 16 17 O -0.51 -10.04 17.32 5.11 0.09 -9.95 16 18 C -0.10 -1.38 5.69 -83.42 -0.47 -1.85 16 19 C 0.16 2.35 7.77 -17.12 -0.13 2.22 16 20 Cl 0.02 0.33 29.11 -51.86 -1.51 -1.18 16 21 N -0.48 -6.49 11.25 -9.39 -0.11 -6.60 16 22 C 0.25 2.75 7.77 -156.07 -1.21 1.54 16 23 C -0.08 -0.55 10.10 -39.37 -0.40 -0.95 16 24 C -0.09 -0.39 10.07 -39.56 -0.40 -0.79 16 25 C -0.13 -0.64 10.00 -39.92 -0.40 -1.04 16 26 C 0.06 0.50 10.82 -16.79 -0.18 0.31 16 27 N -0.33 -3.70 2.96 -60.12 -0.18 -3.87 16 28 C 0.11 1.82 6.35 -2.53 -0.02 1.80 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 31 H 0.02 0.40 7.96 -51.93 -0.41 -0.02 16 32 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.15 0.17 8.06 -52.49 -0.42 -0.25 16 39 H 0.16 0.28 8.06 -52.49 -0.42 -0.14 16 40 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.09 1.67 7.99 -51.93 -0.41 1.25 16 42 H 0.07 1.18 7.91 -51.93 -0.41 0.77 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -35.28 374.97 -10.62 -45.91 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.32 Total: 3.61 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -4.04 Total: 4.30 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.47 Total: -65.67 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.51 Total: -1.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.28 -10.62 -45.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480676418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.682 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds