Wall clock time and date at job start Wed Apr 1 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47150 * 239.99912 * 3 2 1 5 5 H 1.48505 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47208 * 119.99855 * 3 2 1 7 7 C 1.38813 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99962 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00209 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.88610 * 308.88417 * 11 10 9 13 13 C 1.55153 * 111.00221 * 184.99818 * 11 10 9 14 14 C 1.54322 * 102.94263 * 206.42356 * 13 11 10 15 15 N 1.47025 * 107.26793 * 22.19732 * 14 13 11 16 16 C 1.34784 * 125.64722 * 181.00918 * 15 14 13 17 17 O 1.21792 * 119.99647 * 174.83752 * 16 15 14 18 18 C 1.41657 * 120.00272 * 354.84280 * 16 15 14 19 19 C 1.38711 * 126.80706 * 99.40310 * 18 16 15 20 20 Cl 1.73600 * 125.91467 * 0.03164 * 19 18 16 21 21 N 1.32418 * 108.17051 * 180.02562 * 19 18 16 22 22 C 1.33204 * 109.83264 * 0.02562 * 21 19 18 23 23 C 1.40651 * 131.77884 * 180.02562 * 22 21 19 24 24 C 1.36298 * 119.38700 * 179.20235 * 23 22 21 25 25 C 1.40167 * 119.60647 * 0.65391 * 24 23 22 26 26 C 1.35263 * 120.12305 * 359.57471 * 25 24 23 27 27 N 1.35953 * 120.63746 * 0.02562 * 26 25 24 28 28 C 1.47423 * 108.70679 * 1.05734 * 15 14 13 29 29 H 0.96996 * 120.00654 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99695 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47452 * 300.00194 * 10 9 7 32 32 H 1.09008 * 109.46994 * 59.99816 * 10 9 7 33 33 H 1.08991 * 110.72582 * 324.79161 * 13 11 10 34 34 H 1.09002 * 110.71605 * 87.89066 * 13 11 10 35 35 H 1.08995 * 109.88506 * 141.60873 * 14 13 11 36 36 H 1.08998 * 109.89042 * 262.78074 * 14 13 11 37 37 H 1.08008 * 120.30686 * 359.95791 * 23 22 21 38 38 H 1.07998 * 120.19687 * 180.20654 * 24 23 22 39 39 H 1.08001 * 119.94120 * 179.60872 * 25 24 23 40 40 H 1.07997 * 119.68637 * 180.02562 * 26 25 24 41 41 H 1.08993 * 110.36768 * 217.03700 * 28 15 14 42 42 H 1.08994 * 110.36705 * 94.70656 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3258 -4.6995 0.7941 13 6 1.7995 -6.1800 0.1274 14 6 0.8248 -7.1644 -0.5527 15 7 -0.0333 -6.3782 -1.4511 16 6 -1.0301 -6.8691 -2.2142 17 8 -1.7391 -6.1110 -2.8513 18 6 -1.2531 -8.2667 -2.2750 19 6 -2.2092 -8.9869 -1.5742 20 17 -3.3604 -8.3294 -0.4535 21 7 -2.0919 -10.2629 -1.9082 22 6 -1.1060 -10.4100 -2.7918 23 6 -0.5939 -11.5460 -3.4441 24 6 0.4312 -11.4028 -4.3309 25 6 0.9682 -10.1301 -4.5690 26 6 0.4651 -9.0504 -3.9283 27 7 -0.5627 -9.1835 -3.0484 28 6 0.3777 -4.9642 -1.3801 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7145 -0.8894 32 1 2.6848 -3.7144 0.8906 33 1 2.7523 -6.1537 -0.4011 34 1 1.9481 -6.4422 1.1749 35 1 1.3842 -7.9029 -1.1268 36 1 0.2146 -7.6623 0.2009 37 1 -1.0172 -12.5212 -3.2533 38 1 0.8322 -12.2658 -4.8416 39 1 1.7847 -10.0114 -5.2659 40 1 0.8839 -8.0730 -4.1174 41 1 -0.4938 -4.3123 -1.4407 42 1 1.0817 -4.7332 -2.1795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480676418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:23 Heat of formation + Delta-G solvation = 51.777330 kcal Electronic energy + Delta-G solvation = -27696.304401 eV Core-core repulsion = 23703.319919 eV Total energy + Delta-G solvation = -3992.984482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.17488 -41.21663 -39.08651 -38.63584 -37.73145 -36.48018 -34.99701 -33.97649 -32.22582 -31.41894 -30.61449 -29.97587 -27.32440 -25.70640 -24.86312 -24.27537 -23.60915 -23.23728 -21.52692 -21.00661 -19.43158 -18.86414 -18.27863 -18.10542 -17.72767 -17.18079 -16.96318 -16.60330 -16.32979 -16.07407 -15.56354 -15.49868 -15.24823 -15.12880 -14.72556 -14.18227 -14.07823 -13.98035 -13.59093 -13.46363 -13.13828 -13.06869 -12.94184 -12.72017 -12.60541 -12.41350 -12.33837 -12.17822 -12.14775 -11.92082 -11.78970 -11.67644 -11.63690 -11.33252 -10.92399 -9.99003 -9.92098 -9.12952 -8.99694 -7.93949 -5.23461 -0.43131 -0.19299 0.32135 0.76760 1.20320 1.47251 1.48171 1.50744 1.56864 1.94495 2.37202 2.56568 2.95342 3.25144 3.40050 3.45517 3.51689 3.58247 3.73773 3.81293 3.88597 4.08828 4.14846 4.16163 4.36935 4.39626 4.50967 4.59026 4.59314 4.75481 4.78578 4.85464 4.94258 4.98880 5.00791 5.10046 5.13090 5.19669 5.37580 5.39603 5.50762 5.70573 6.16306 6.27266 6.27705 6.70950 7.33476 8.10020 8.31115 9.29555 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.002518 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.541737 B =11118.472890 C =11892.703390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.749 5.749 10 C 0.166 3.834 11 C -0.097 4.097 12 H 0.074 0.926 13 C -0.107 4.107 14 C 0.104 3.896 15 N -0.600 5.600 16 C 0.613 3.387 17 O -0.564 6.564 18 C -0.129 4.129 19 C 0.155 3.845 20 Cl 0.011 6.989 21 N -0.512 5.512 22 C 0.244 3.756 23 C -0.096 4.096 24 C -0.059 4.059 25 C -0.102 4.102 26 C 0.027 3.973 27 N -0.326 5.326 28 C 0.119 3.881 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.031 0.969 32 H 0.036 0.964 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.180 0.820 38 H 0.198 0.802 39 H 0.200 0.800 40 H 0.168 0.832 41 H 0.048 0.952 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.506 -31.028 -8.188 32.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.039 3.961 11 C -0.117 4.117 12 H 0.092 0.908 13 C -0.145 4.145 14 C -0.018 4.018 15 N -0.332 5.332 16 C 0.400 3.600 17 O -0.442 6.442 18 C -0.246 4.246 19 C -0.011 4.011 20 Cl 0.039 6.961 21 N -0.234 5.234 22 C 0.004 3.996 23 C -0.116 4.116 24 C -0.083 4.083 25 C -0.122 4.122 26 C -0.096 4.096 27 N 0.003 4.997 28 C -0.004 4.004 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.197 0.803 38 H 0.215 0.785 39 H 0.217 0.783 40 H 0.185 0.815 41 H 0.066 0.934 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.675 -31.050 -8.156 32.601 hybrid contribution -0.504 2.344 0.100 2.400 sum 5.171 -28.706 -8.056 30.260 Atomic orbital electron populations 1.69828 1.06820 1.26103 1.59584 1.25621 0.96328 1.01357 1.03835 0.85195 0.77124 0.79020 0.78317 1.20248 1.22581 1.20098 1.19625 0.91636 0.85219 1.41036 0.90110 1.42642 1.05607 1.01440 1.89491 1.20751 0.93131 0.83446 0.98735 1.22422 0.97957 0.95961 0.95337 0.90779 1.22644 0.97992 0.90672 1.03147 1.22227 0.92344 0.94648 0.92564 1.48650 1.32090 1.10106 1.42365 1.15216 0.79710 0.85566 0.79491 1.90893 1.46851 1.60400 1.46065 1.18987 1.05397 0.90740 1.09461 1.21218 0.93558 0.89999 0.96333 1.98408 1.56661 1.83244 1.57738 1.70088 1.19593 1.16477 1.17254 1.21434 0.93559 0.86729 0.97901 1.20839 0.98182 0.95797 0.96734 1.21795 0.92847 0.99255 0.94359 1.21591 1.01152 0.90303 0.99137 1.22266 0.89980 1.04005 0.93366 1.42506 1.22625 1.07849 1.26746 1.22246 0.98758 0.80711 0.98639 0.94140 0.79736 0.95122 0.94584 0.88192 0.87392 0.89793 0.91018 0.80268 0.78518 0.78255 0.81503 0.93381 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 3 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.75 -37.75 5.55 -343.46 -1.91 -39.66 16 10 C 0.17 6.10 5.72 86.38 0.49 6.59 16 11 C -0.10 -2.91 3.05 -9.40 -0.03 -2.94 16 12 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 13 C -0.11 -2.06 6.42 31.78 0.20 -1.86 16 14 C 0.10 2.16 6.45 86.73 0.56 2.72 16 15 N -0.60 -17.50 3.33 -822.28 -2.74 -20.23 16 16 C 0.61 20.61 7.19 85.08 0.61 21.22 16 17 O -0.56 -24.13 17.32 -4.64 -0.08 -24.21 16 18 C -0.13 -3.75 5.69 39.06 0.22 -3.53 16 19 C 0.15 4.62 7.77 84.72 0.66 5.28 16 20 Cl 0.01 0.33 29.11 -2.72 -0.08 0.25 16 21 N -0.51 -14.01 11.25 -183.61 -2.07 -16.08 16 22 C 0.24 5.09 7.77 134.00 1.04 6.13 16 23 C -0.10 -0.96 10.10 22.41 0.23 -0.74 16 24 C -0.06 -0.18 10.07 22.29 0.22 0.05 16 25 C -0.10 -0.47 10.00 22.05 0.22 -0.25 16 26 C 0.03 0.37 10.82 83.37 0.90 1.27 16 27 N -0.33 -7.10 2.96 -344.11 -1.02 -8.12 16 28 C 0.12 3.95 6.35 86.86 0.55 4.50 16 29 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.37 20.48 7.67 -92.70 -0.71 19.76 16 31 H 0.03 1.10 7.96 -2.39 -0.02 1.08 16 32 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.10 1.60 8.04 -2.39 -0.02 1.58 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.20 -1.12 8.06 -2.91 -0.02 -1.14 16 39 H 0.20 -0.66 8.06 -2.91 -0.02 -0.68 16 40 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.05 1.98 7.99 -2.39 -0.02 1.96 16 42 H 0.08 2.47 7.91 -2.39 -0.02 2.45 16 Total: -1.00 -83.23 374.97 1.97 -81.26 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.35 Total: 17.56 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 7.19 Total: 21.62 kcal Atomic # 7 Polarization: -137.51 SS G_CDS: -7.44 Total: -144.95 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.08 Total: -24.21 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -0.08 Total: 0.25 kcal Total: -83.23 1.97 -81.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480676418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.039 kcal (2) G-P(sol) polarization free energy of solvation -83.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds