Wall clock time and date at job start Wed Apr 1 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99750 * 2 1 4 4 H 1.48499 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46947 * 299.99231 * 3 2 1 6 6 H 1.48498 * 109.47451 * 59.99194 * 3 2 1 7 7 C 1.38812 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00139 * 182.73482 * 7 2 1 9 9 N 1.36935 * 119.99962 * 2.73976 * 7 2 1 10 10 C 1.46967 * 120.59135 * 219.25075 * 9 7 2 11 11 C 1.53371 * 108.63397 * 235.24565 * 10 9 7 12 12 N 1.46976 * 108.63347 * 310.57452 * 11 10 9 13 13 C 1.34772 * 120.59290 * 235.20147 * 12 11 10 14 14 O 1.21600 * 119.99867 * 179.85417 * 13 12 11 15 15 C 1.47506 * 120.00188 * 359.85298 * 13 12 11 16 16 C 1.39571 * 120.47369 * 328.46028 * 15 13 12 17 17 N 1.31550 * 120.67841 * 179.97438 * 16 15 13 18 18 C 1.32733 * 122.06027 * 0.02562 * 17 16 15 19 19 C 1.39939 * 120.74301 * 0.02723 * 18 17 16 20 20 C 1.38615 * 118.94352 * 359.94992 * 19 18 17 21 21 N 1.39388 * 121.62893 * 179.61633 * 19 18 17 22 22 C 1.33415 * 124.35409 * 24.54664 * 21 19 18 23 23 O 1.21294 * 118.56970 * 178.06084 * 22 21 19 24 24 C 1.50212 * 122.85147 * 357.77489 * 22 21 19 25 25 S 1.76405 * 119.55641 * 180.02562 * 18 17 16 26 26 C 1.46960 * 118.80809 * 55.48191 * 12 11 10 27 27 C 1.46967 * 120.59747 * 39.26650 * 9 7 2 28 28 H 0.96999 * 120.00139 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.61043 * 115.50594 * 10 9 7 30 30 H 1.08998 * 109.75333 * 355.07539 * 10 9 7 31 31 H 1.08996 * 109.61211 * 190.83217 * 11 10 9 32 32 H 1.09002 * 109.75221 * 70.40074 * 11 10 9 33 33 H 1.07994 * 119.66101 * 359.95117 * 16 15 13 34 34 H 1.08002 * 120.73783 * 180.02562 * 20 19 18 35 35 H 0.96995 * 117.82491 * 204.25652 * 21 19 18 36 36 H 1.08999 * 109.44705 * 82.82499 * 24 22 21 37 37 H 1.08997 * 109.44632 * 202.74282 * 24 22 21 38 38 H 1.08997 * 109.61668 * 64.26119 * 26 12 11 39 39 H 1.09006 * 109.60910 * 184.77708 * 26 12 11 40 40 H 1.08995 * 109.61563 * 244.50045 * 27 9 7 41 41 H 1.08996 * 109.60657 * 5.01055 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0893 -1.2027 0.0452 9 7 1.3268 -2.3874 -0.0556 10 6 1.7683 -3.5436 0.7369 11 6 1.9802 -4.7331 -0.2078 12 7 0.7922 -4.8719 -1.0620 13 6 0.1201 -6.0387 -1.1179 14 8 -0.8630 -6.1407 -1.8262 15 6 0.5770 -7.1920 -0.3198 16 6 1.9339 -7.3701 -0.0457 17 7 2.3457 -8.3969 0.6660 18 6 1.5037 -9.3012 1.1509 19 6 0.1278 -9.1943 0.9192 20 6 -0.3459 -8.1259 0.1739 21 7 -0.7720 -10.1374 1.4129 22 6 -0.5451 -10.9096 2.4769 23 8 -1.4174 -11.6716 2.8372 24 6 0.7459 -10.8808 3.2442 25 16 2.1283 -10.6522 2.0978 26 6 0.3541 -3.7173 -1.8587 27 6 0.1389 -2.5261 -0.9097 28 1 -0.4850 0.8400 -0.0004 29 1 1.0061 -3.7939 1.4748 30 1 2.7042 -3.3074 1.2433 31 1 2.1196 -5.6433 0.3755 32 1 2.8588 -4.5584 -0.8288 33 1 2.6531 -6.6578 -0.4221 34 1 -1.4022 -8.0148 -0.0222 35 1 -1.6213 -10.2360 0.9548 36 1 0.7256 -10.0572 3.9579 37 1 0.8707 -11.8218 3.7800 38 1 1.1191 -3.4688 -2.5943 39 1 -0.5807 -3.9564 -2.3659 40 1 -0.7393 -2.7039 -0.2890 41 1 -0.0005 -1.6160 -1.4930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565814704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:09 Heat of formation + Delta-G solvation = 31.576699 kcal Electronic energy + Delta-G solvation = -27942.868205 eV Core-core repulsion = 23951.051465 eV Total energy + Delta-G solvation = -3991.816741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54279 -40.41987 -39.13387 -36.97288 -36.26818 -34.12698 -32.86441 -31.35519 -31.23982 -30.65240 -29.80161 -27.29280 -25.34070 -24.55277 -23.66282 -22.78849 -21.84023 -20.64516 -19.33544 -18.70435 -18.64354 -17.93031 -17.27318 -16.75721 -16.26465 -15.93406 -15.53045 -15.41291 -15.15481 -14.89372 -14.65246 -14.28537 -13.84976 -13.77971 -13.76989 -13.54543 -13.39097 -13.35199 -12.77594 -12.51346 -11.94208 -11.75999 -11.52754 -11.21097 -11.00281 -10.88072 -10.76137 -10.69792 -10.52104 -10.30824 -10.22335 -10.08798 -9.88262 -9.60024 -9.20539 -8.64534 -8.46215 -8.10594 -6.65441 -5.94367 -3.53433 -0.04051 0.56497 0.67614 1.41395 1.99394 2.22467 2.65229 3.05331 3.27649 3.35528 3.37126 3.40003 3.50594 3.94564 4.15005 4.29553 4.35376 4.40068 4.44067 4.65798 4.77129 5.02512 5.12390 5.26762 5.47975 5.58354 5.60291 5.71189 5.75771 5.93278 6.00509 6.18824 6.25337 6.37215 6.43336 6.59057 6.69865 7.13907 7.15460 7.25667 7.45102 7.62249 7.67286 8.23018 8.35660 9.05738 9.62770 10.25341 11.12684 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.002485 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.436662 B =11266.152859 C =11677.804611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.015 3.985 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.265 4.265 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.132 3.868 11 C 0.056 3.944 12 N -0.581 5.581 13 C 0.553 3.447 14 O -0.544 6.544 15 C -0.133 4.133 16 C 0.115 3.885 17 N -0.431 5.431 18 C 0.086 3.914 19 C 0.105 3.895 20 C -0.041 4.041 21 N -0.650 5.650 22 C 0.527 3.473 23 O -0.511 6.511 24 C -0.148 4.148 25 S -0.006 6.006 26 C 0.085 3.915 27 C 0.162 3.838 28 H 0.257 0.743 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.193 0.807 34 H 0.157 0.843 35 H 0.419 0.581 36 H 0.131 0.869 37 H 0.156 0.844 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.025 0.975 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 -19.463 2.979 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.185 4.185 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.395 4.395 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.005 3.995 11 C -0.068 4.068 12 N -0.312 5.312 13 C 0.339 3.661 14 O -0.423 6.423 15 C -0.141 4.141 16 C -0.048 4.048 17 N -0.141 5.141 18 C -0.165 4.165 19 C 0.001 3.999 20 C -0.071 4.071 21 N -0.296 5.296 22 C 0.313 3.687 23 O -0.386 6.386 24 C -0.299 4.299 25 S 0.232 5.768 26 C -0.038 4.038 27 C 0.036 3.964 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.209 0.791 34 H 0.175 0.825 35 H 0.258 0.742 36 H 0.149 0.851 37 H 0.174 0.826 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.122 -20.573 3.154 21.218 hybrid contribution -1.948 1.883 -0.256 2.722 sum 2.174 -18.690 2.898 19.038 Atomic orbital electron populations 1.69927 1.05479 1.25868 1.52871 1.25438 0.95481 0.98710 0.98897 0.86190 0.79426 0.83542 0.77395 1.20034 1.21438 1.21432 1.19142 0.90039 0.82881 1.47431 0.91770 1.43878 1.31431 1.08697 1.47228 1.21294 0.98864 0.87439 0.91936 1.23310 0.87369 1.01587 0.94568 1.47986 1.28516 1.11075 1.43594 1.17829 0.83595 0.82391 0.82250 1.90783 1.26430 1.83252 1.41819 1.21001 0.94904 0.97417 1.00807 1.23757 0.94076 0.93638 0.93304 1.67879 1.35981 1.00821 1.09429 1.23026 0.89505 1.00630 1.03335 1.18296 0.89523 0.92044 1.00047 1.21347 1.01383 0.89944 0.94390 1.43082 1.20451 1.36556 1.29483 1.19923 0.89086 0.79664 0.80074 1.90851 1.44823 1.37385 1.65557 1.23866 0.93599 1.10947 1.01515 1.86132 1.22537 1.32515 1.35575 1.22755 1.00132 0.86160 0.94774 1.21253 0.88886 0.94664 0.91624 0.93311 0.95898 0.91158 0.88974 0.90538 0.79078 0.82527 0.74205 0.85125 0.82648 0.91609 0.89871 0.95658 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.75 11.20 55.49 0.62 -24.13 16 2 C 0.02 0.39 5.18 -17.43 -0.09 0.30 16 3 Si 0.91 20.46 29.55 -169.99 -5.02 15.44 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.27 -6.73 9.50 -15.06 -0.14 -6.87 16 8 H 0.06 1.59 7.83 -52.49 -0.41 1.18 16 9 N -0.59 -13.55 2.93 -171.77 -0.50 -14.05 16 10 C 0.13 2.44 6.67 -3.60 -0.02 2.42 16 11 C 0.06 0.81 5.06 -3.59 -0.02 0.79 16 12 N -0.58 -9.49 2.94 -173.44 -0.51 -10.00 16 13 C 0.55 8.76 7.46 -12.49 -0.09 8.67 16 14 O -0.54 -10.13 16.20 5.28 0.09 -10.05 16 15 C -0.13 -1.68 5.54 -104.86 -0.58 -2.26 16 16 C 0.11 1.30 8.62 -17.18 -0.15 1.15 16 17 N -0.43 -5.01 10.30 -12.11 -0.12 -5.14 16 18 C 0.09 0.92 6.88 -16.53 -0.11 0.80 16 19 C 0.11 1.05 6.50 -83.65 -0.54 0.50 16 20 C -0.04 -0.44 9.53 -38.68 -0.37 -0.81 16 21 N -0.65 -5.61 5.14 -10.25 -0.05 -5.66 16 22 C 0.53 4.83 7.59 -11.83 -0.09 4.74 16 23 O -0.51 -6.17 17.80 5.55 0.10 -6.07 16 24 C -0.15 -0.99 6.46 35.77 0.23 -0.75 16 25 S -0.01 -0.06 22.56 -107.50 -2.42 -2.48 16 26 C 0.08 1.55 6.62 -3.37 -0.02 1.53 16 27 C 0.16 3.62 5.42 -3.36 -0.02 3.60 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 31 H 0.09 1.10 3.54 -53.29 -0.19 0.91 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.19 1.91 5.30 -52.49 -0.28 1.63 16 34 H 0.16 1.56 8.00 -52.49 -0.42 1.14 16 35 H 0.42 3.02 8.67 -40.82 -0.35 2.66 16 36 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.16 0.73 8.13 -51.92 -0.42 0.31 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.53 6.99 -51.93 -0.36 1.16 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 2.39 6.39 -51.93 -0.33 2.06 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -31.84 348.77 -9.03 -40.86 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.43 Total: 2.20 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: -2.02 Total: 13.81 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.57 Total: -58.98 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.18 Total: -16.12 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.42 Total: -2.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.84 -9.03 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565814704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.441 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds