Wall clock time and date at job start Wed Apr 1 2020 04:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47187 * 270.27940 * 3 2 1 5 5 H 1.48503 * 109.46972 * 30.28341 * 3 2 1 6 6 H 1.48505 * 109.46527 * 150.27684 * 3 2 1 7 7 C 1.38811 * 120.00096 * 180.28215 * 2 1 3 8 8 H 1.08000 * 119.99562 * 359.72283 * 7 2 1 9 9 N 1.36929 * 120.00002 * 179.71743 * 7 2 1 10 10 C 1.46507 * 120.00001 * 173.93947 * 9 7 2 11 11 H 1.09000 * 109.47293 * 177.00561 * 10 9 7 12 12 C 1.52997 * 109.46894 * 57.00064 * 10 9 7 13 13 N 1.46502 * 109.46799 * 55.00351 * 12 10 9 14 14 C 1.34775 * 119.99640 * 179.97438 * 13 12 10 15 15 O 1.21286 * 120.00127 * 359.97438 * 14 13 12 16 16 C 1.50709 * 119.99966 * 180.02562 * 14 13 12 17 17 N 1.46501 * 109.46816 * 179.97438 * 16 14 13 18 18 C 1.35039 * 126.03479 * 125.00087 * 17 16 14 19 19 C 1.35371 * 107.72975 * 179.97438 * 18 17 16 20 20 Cl 1.73598 * 126.04908 * 179.97438 * 19 18 17 21 21 C 1.39928 * 107.90801 * 0.02562 * 19 18 17 22 22 N 1.30851 * 108.20988 * 359.75466 * 21 19 18 23 23 C 1.50704 * 109.46771 * 297.00335 * 10 9 7 24 24 C 1.38237 * 120.00383 * 326.24021 * 23 10 9 25 25 C 1.38228 * 119.99832 * 179.81171 * 24 23 10 26 26 C 1.38231 * 120.00125 * 0.39917 * 25 24 23 27 27 C 1.38231 * 120.00241 * 359.85127 * 26 25 24 28 28 C 1.38233 * 119.99655 * 359.96282 * 27 26 25 29 29 H 0.97007 * 119.99835 * 359.71529 * 1 2 3 30 30 H 0.96996 * 120.00253 * 353.94465 * 9 7 2 31 31 H 1.09003 * 109.47019 * 175.00132 * 12 10 9 32 32 H 1.08992 * 109.47576 * 295.00248 * 12 10 9 33 33 H 0.96994 * 120.00324 * 359.97438 * 13 12 10 34 34 H 1.08994 * 109.46650 * 299.99295 * 16 14 13 35 35 H 1.08994 * 109.46810 * 60.00072 * 16 14 13 36 36 H 1.08005 * 126.13761 * 359.94159 * 18 17 16 37 37 H 1.08004 * 125.89840 * 180.02562 * 21 19 18 38 38 H 1.07999 * 119.99716 * 359.97438 * 24 23 10 39 39 H 1.08006 * 119.99870 * 180.22836 * 25 24 23 40 40 H 1.08001 * 119.99844 * 179.83738 * 26 25 24 41 41 H 1.08000 * 120.00225 * 179.97438 * 27 26 25 42 42 H 1.08003 * 119.99572 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4917 2.0499 -1.4000 5 1 1.4505 2.6510 0.7060 6 1 3.5507 1.4385 0.6942 7 6 2.0103 -1.2021 -0.0059 8 1 1.4702 -2.1374 -0.0060 9 7 3.3796 -1.2021 -0.0118 10 6 4.1127 -2.4641 0.1160 11 1 5.1828 -2.2722 0.0375 12 6 3.6825 -3.4188 -0.9995 13 7 3.8651 -2.7661 -2.2983 14 6 3.5500 -3.4225 -3.4325 15 8 3.1159 -4.5536 -3.3779 16 6 3.7383 -2.7513 -4.7686 17 7 3.3275 -3.6659 -5.8367 18 6 2.4165 -3.4055 -6.7990 19 6 2.3244 -4.5022 -7.5872 20 17 1.2910 -4.6823 -8.9704 21 6 3.2088 -5.4655 -7.0891 22 7 3.8137 -4.9633 -6.0432 23 6 3.8108 -3.0870 1.4546 24 6 3.5881 -2.2829 2.5568 25 6 3.3075 -2.8543 3.7837 26 6 3.2576 -4.2299 3.9104 27 6 3.4854 -5.0341 2.8094 28 6 3.7623 -4.4626 1.5816 29 1 -0.4850 0.8401 0.0042 30 1 3.8642 -0.3665 -0.1004 31 1 4.2903 -4.3227 -0.9585 32 1 2.6327 -3.6808 -0.8689 33 1 4.2126 -1.8616 -2.3420 34 1 3.1305 -1.8475 -4.8100 35 1 4.7883 -2.4894 -4.8989 36 1 1.8607 -2.4871 -6.9181 37 1 3.3680 -6.4516 -7.4999 38 1 3.6309 -1.2083 2.4586 39 1 3.1298 -2.2260 4.6441 40 1 3.0409 -4.6764 4.8696 41 1 3.4468 -6.1089 2.9084 42 1 3.9407 -5.0910 0.7214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567663531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:19 Heat of formation + Delta-G solvation = 92.023803 kcal Electronic energy + Delta-G solvation = -27317.450340 eV Core-core repulsion = 23326.211076 eV Total energy + Delta-G solvation = -3991.239264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -41.38234 -39.52085 -38.77035 -36.50175 -36.09790 -33.66141 -33.34740 -32.04001 -30.60860 -30.16150 -29.96388 -28.38017 -26.68700 -24.29558 -22.50055 -21.93798 -21.45314 -21.29006 -20.20243 -19.73798 -18.16877 -17.59573 -17.23376 -16.46442 -15.76266 -15.44998 -14.99425 -14.83183 -14.72972 -14.34780 -14.27695 -14.17234 -14.02875 -13.42221 -13.26941 -12.98400 -12.93951 -12.72089 -12.65945 -12.22998 -12.05356 -11.76526 -11.60283 -11.46606 -11.11122 -10.94475 -10.72610 -10.56207 -10.50100 -10.25079 -10.02377 -9.70270 -9.42889 -9.16099 -8.67583 -8.50791 -8.41391 -8.20145 -7.52001 -5.90174 -3.31446 1.59549 1.83199 1.84150 1.92491 2.54584 2.65978 2.78099 3.20455 3.22741 3.32463 3.36200 4.26869 4.42306 4.46842 4.59649 4.80045 4.87005 4.90830 5.03972 5.28763 5.29951 5.37400 5.39613 5.45657 5.50127 5.53727 5.64846 5.78787 5.92951 6.09505 6.15676 6.26105 6.45280 6.50835 6.55107 6.61253 6.73259 6.93496 6.99952 7.19530 7.46467 7.50378 7.74759 7.83686 8.26227 8.42615 9.01997 9.72202 9.88907 11.27248 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.002759 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.564286 B =10146.911977 C =11821.132598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.878 3.122 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.091 0.909 9 N -0.740 5.740 10 C 0.204 3.796 11 H 0.075 0.925 12 C 0.118 3.882 13 N -0.700 5.700 14 C 0.498 3.502 15 O -0.521 6.521 16 C 0.115 3.885 17 N -0.349 5.349 18 C 0.076 3.924 19 C -0.188 4.188 20 Cl -0.048 7.048 21 C 0.056 3.944 22 N -0.251 5.251 23 C -0.078 4.078 24 C -0.074 4.074 25 C -0.128 4.128 26 C -0.131 4.131 27 C -0.130 4.130 28 C -0.124 4.124 29 H 0.260 0.740 30 H 0.364 0.636 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.184 0.816 37 H 0.189 0.811 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.470 -4.977 -8.141 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.184 4.184 3 Si 0.708 3.292 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.381 5.381 10 C 0.093 3.907 11 H 0.093 0.907 12 C -0.007 4.007 13 N -0.351 5.351 14 C 0.281 3.719 15 O -0.397 6.397 16 C -0.010 4.010 17 N -0.131 5.131 18 C -0.072 4.072 19 C -0.226 4.226 20 Cl -0.020 7.020 21 C -0.132 4.132 22 N -0.071 5.071 23 C -0.081 4.081 24 C -0.092 4.092 25 C -0.146 4.146 26 C -0.150 4.150 27 C -0.148 4.148 28 C -0.143 4.143 29 H 0.070 0.930 30 H 0.197 0.803 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.236 0.764 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.201 0.799 37 H 0.206 0.794 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.705 -5.947 -7.148 14.179 hybrid contribution -0.385 1.934 -0.617 2.066 sum 10.320 -4.013 -7.765 13.524 Atomic orbital electron populations 1.69703 1.05171 1.25829 1.56542 1.24693 0.95088 0.96950 1.01683 0.86687 0.79364 0.85474 0.77688 1.21204 1.21830 1.20163 1.18907 0.80048 0.94622 1.43539 0.89139 1.42774 1.04453 1.02278 1.88600 1.19299 0.94982 0.86959 0.89428 0.90696 1.21838 1.02450 0.94736 0.81682 1.45576 1.65557 1.18567 1.05442 1.20226 0.79240 0.87031 0.85420 1.90777 1.44003 1.18007 1.86864 1.21617 1.04026 0.91114 0.84293 1.47829 1.31421 1.11953 1.21858 1.22246 0.94523 1.00254 0.90153 1.20700 1.05966 0.97279 0.98679 1.98316 1.65921 1.97625 1.40143 1.23880 0.95334 1.00171 0.93776 1.77609 1.21672 0.91162 1.16668 1.20509 0.98392 0.92966 0.96263 1.20950 0.96463 1.00374 0.91438 1.21099 1.01014 0.94808 0.97710 1.21000 1.01715 0.93978 0.98266 1.20985 1.01422 0.99125 0.93240 1.21101 1.01137 0.94685 0.97342 0.92968 0.80319 0.92173 0.90664 0.76418 0.85194 0.86614 0.79905 0.79371 0.85763 0.86859 0.87065 0.86922 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.20 13.97 55.49 0.78 -26.43 16 2 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 3 Si 0.88 19.53 27.68 -169.99 -4.70 14.82 16 4 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -5.64 6.61 56.52 0.37 -5.27 16 7 C -0.24 -5.89 9.05 -15.06 -0.14 -6.02 16 8 H 0.09 2.56 7.19 -52.49 -0.38 2.18 16 9 N -0.74 -14.11 3.64 -54.55 -0.20 -14.31 16 10 C 0.20 3.28 3.26 -69.08 -0.22 3.05 16 11 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 12 C 0.12 1.93 3.89 -4.04 -0.02 1.92 16 13 N -0.70 -10.14 5.39 -60.29 -0.32 -10.47 16 14 C 0.50 7.65 7.86 -10.98 -0.09 7.56 16 15 O -0.52 -10.39 15.72 5.55 0.09 -10.30 16 16 C 0.11 1.26 6.99 -5.19 -0.04 1.22 16 17 N -0.35 -4.59 3.40 -62.51 -0.21 -4.80 16 18 C 0.08 0.88 11.43 -17.16 -0.20 0.68 16 19 C -0.19 -2.26 6.65 -39.97 -0.27 -2.53 16 20 Cl -0.05 -0.51 29.30 -51.86 -1.52 -2.03 16 21 C 0.06 0.71 12.02 -17.34 -0.21 0.50 16 22 N -0.25 -3.75 11.65 30.64 0.36 -3.40 16 23 C -0.08 -1.34 5.16 -104.62 -0.54 -1.88 16 24 C -0.07 -1.31 8.96 -39.59 -0.35 -1.66 16 25 C -0.13 -2.05 10.05 -39.59 -0.40 -2.45 16 26 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 27 C -0.13 -1.92 10.05 -39.59 -0.40 -2.32 16 28 C -0.12 -1.96 9.14 -39.59 -0.36 -2.32 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.36 6.67 5.97 -40.82 -0.24 6.43 16 31 H 0.06 0.92 6.86 -51.93 -0.36 0.57 16 32 H 0.08 1.53 7.19 -51.93 -0.37 1.15 16 33 H 0.40 4.95 8.14 -40.82 -0.33 4.62 16 34 H 0.13 1.09 8.07 -51.93 -0.42 0.67 16 35 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.18 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.19 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.12 2.32 7.52 -52.49 -0.39 1.92 16 39 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 40 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 42 H 0.12 1.71 6.21 -52.48 -0.33 1.38 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -33.87 373.67 -8.77 -42.64 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -4.95 Total: 15.00 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -3.72 Total: -6.36 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.40 Total: -59.40 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.70 Total: 14.82 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.52 Total: -2.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.87 -8.77 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567663531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.667 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds