Wall clock time and date at job start Wed Apr 1 2020 04:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48505 * 109.46649 * 269.99689 * 3 2 1 5 5 H 1.48497 * 109.46887 * 29.99627 * 3 2 1 6 6 H 1.48492 * 109.47103 * 149.99843 * 3 2 1 7 7 C 1.38809 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00538 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.05710 * 359.63056 * 9 7 2 11 11 C 1.53500 * 87.98620 * 153.13723 * 10 9 7 12 12 C 1.52993 * 114.20803 * 139.65741 * 11 10 9 13 13 C 1.53005 * 109.47184 * 200.97947 * 12 11 10 14 14 O 1.42892 * 109.47154 * 185.00039 * 13 12 11 15 15 N 1.46501 * 114.38346 * 272.47131 * 11 10 9 16 16 C 1.34778 * 119.99809 * 279.89959 * 15 11 10 17 17 O 1.21619 * 119.99861 * 355.27856 * 16 15 11 18 18 C 1.47306 * 119.99997 * 175.28577 * 16 15 11 19 19 C 1.38368 * 120.57580 * 359.97438 * 18 16 15 20 20 C 1.38859 * 121.15618 * 179.97438 * 19 18 16 21 21 C 1.35575 * 122.43633 * 0.02562 * 20 19 18 22 22 C 1.41631 * 120.90129 * 359.97438 * 21 20 19 23 23 N 1.32391 * 131.03570 * 180.02562 * 22 21 20 24 24 S 1.55552 * 109.37696 * 179.97438 * 23 22 21 25 25 N 1.55557 * 100.17689 * 359.97438 * 24 23 22 26 26 C 1.31857 * 109.44186 * 359.72304 * 25 24 23 27 27 C 1.47073 * 136.05694 * 180.02562 * 9 7 2 28 28 H 0.96999 * 120.00272 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.46938 * 267.91467 * 10 9 7 30 30 H 1.08999 * 113.46886 * 38.35829 * 10 9 7 31 31 H 1.09007 * 109.46775 * 320.97211 * 12 11 10 32 32 H 1.08996 * 109.47295 * 80.97628 * 12 11 10 33 33 H 1.08998 * 109.46447 * 304.99889 * 13 12 11 34 34 H 1.08996 * 109.47218 * 64.99169 * 13 12 11 35 35 H 0.96698 * 114.00390 * 179.97438 * 14 13 12 36 36 H 0.97000 * 120.00041 * 99.90429 * 15 11 10 37 37 H 1.08004 * 119.41668 * 0.02562 * 19 18 16 38 38 H 1.08001 * 118.77942 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.54625 * 180.02562 * 21 20 19 40 40 H 1.09002 * 113.46624 * 321.64281 * 27 9 7 41 41 H 1.08997 * 113.46884 * 92.08312 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.0877 -2.7949 0.0090 11 6 0.3385 -4.0933 -0.6900 12 6 -0.3819 -5.3442 -0.1833 13 6 0.4427 -6.5847 -0.5333 14 8 -0.2833 -7.7589 -0.1647 15 7 0.3875 -4.0054 -2.1516 16 6 -0.7480 -4.1036 -2.8710 17 8 -1.8008 -4.3507 -2.3147 18 6 -0.7137 -3.9117 -4.3311 19 6 0.4775 -3.6297 -4.9762 20 6 0.5237 -3.4472 -6.3520 21 6 -0.5802 -3.5326 -7.1344 22 6 -1.8491 -3.8170 -6.5733 23 7 -3.0399 -3.9453 -7.1375 24 16 -4.0982 -4.2628 -6.0425 25 7 -3.1916 -4.2722 -4.7785 26 6 -1.9453 -4.0242 -5.1304 27 6 1.6799 -3.8154 0.0029 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4888 -2.9524 1.0102 30 1 -0.7254 -2.1599 -0.6061 31 1 -0.5020 -5.2812 0.8983 32 1 -1.3623 -5.4149 -0.6543 33 1 0.6383 -6.6001 -1.6055 34 1 1.3883 -6.5571 0.0081 35 1 0.1802 -8.5851 -0.3585 36 1 1.2371 -3.8765 -2.6015 37 1 1.3873 -3.5511 -4.3996 38 1 1.4742 -3.2282 -6.8158 39 1 -0.4905 -3.3826 -8.2001 40 1 2.5455 -4.0483 -0.6174 41 1 1.7493 -4.2446 1.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570768059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:22 Heat of formation + Delta-G solvation = 68.526073 kcal Electronic energy + Delta-G solvation = -28459.442937 eV Core-core repulsion = 24469.228442 eV Total energy + Delta-G solvation = -3990.214495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.95889 -39.86979 -37.75499 -36.53111 -36.37270 -33.77322 -33.43941 -32.13020 -30.84007 -29.92247 -27.64279 -27.09747 -24.91187 -24.04227 -23.04552 -22.53298 -21.34678 -20.35858 -19.44524 -18.87512 -17.77808 -17.30250 -16.75985 -16.63494 -16.09897 -15.86475 -15.22952 -14.97097 -14.91125 -14.58449 -14.27905 -13.83910 -13.69810 -13.56725 -12.92695 -12.84190 -12.49133 -12.27993 -12.01271 -11.86436 -11.65859 -11.55655 -11.39879 -11.21461 -11.02949 -10.95027 -10.87155 -10.77330 -10.62542 -10.09548 -9.89651 -9.80631 -9.46255 -9.10077 -8.87612 -8.84754 -8.57802 -8.34392 -6.93906 -5.79072 -3.14108 -0.35210 1.25566 1.35072 1.42997 1.67894 2.96254 3.33550 3.36051 3.40246 3.43431 3.79424 4.08256 4.34125 4.45681 4.61651 4.64816 4.78816 4.91786 5.04815 5.11527 5.30007 5.41682 5.44830 5.55838 5.62039 5.66214 5.85121 5.95399 5.98308 6.09139 6.10779 6.17170 6.26592 6.30827 6.47577 6.69624 6.74360 6.93149 7.19943 7.29940 7.60010 7.78522 7.93273 7.97710 8.67633 8.98486 9.66132 10.57372 11.37137 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.003996 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.949024 B = 7004.582786 C = 8777.210811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.157 3.843 11 C 0.123 3.877 12 C -0.121 4.121 13 C 0.083 3.917 14 O -0.575 6.575 15 N -0.684 5.684 16 C 0.556 3.444 17 O -0.506 6.506 18 C -0.063 4.063 19 C -0.057 4.057 20 C -0.098 4.098 21 C -0.049 4.049 22 C 0.074 3.926 23 N -0.598 5.598 24 S 0.777 5.223 25 N -0.549 5.549 26 C 0.110 3.890 27 C 0.119 3.881 28 H 0.254 0.746 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.371 0.629 36 H 0.397 0.603 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.043 0.957 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -12.510 -14.036 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.099 0.901 9 N -0.331 5.331 10 C 0.030 3.970 11 C 0.035 3.965 12 C -0.160 4.160 13 C 0.006 3.994 14 O -0.379 6.379 15 N -0.335 5.335 16 C 0.342 3.658 17 O -0.381 6.381 18 C -0.073 4.073 19 C -0.082 4.082 20 C -0.123 4.123 21 C -0.074 4.074 22 C -0.087 4.087 23 N -0.448 5.448 24 S 0.825 5.175 25 N -0.397 5.397 26 C -0.052 4.052 27 C -0.008 4.008 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.217 0.783 36 H 0.233 0.767 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.061 0.939 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.293 -12.178 -13.597 18.548 hybrid contribution 3.121 1.082 -0.107 3.305 sum -0.172 -11.097 -13.704 17.634 Atomic orbital electron populations 1.69843 1.05028 1.25462 1.55596 1.24805 0.95589 0.97506 1.02149 0.86149 0.78588 0.83545 0.77602 1.21509 1.21644 1.20644 1.18866 0.89997 0.81257 1.44946 0.90069 1.45579 1.02550 0.98953 1.86034 1.22432 0.88899 0.89049 0.96595 1.21942 0.99209 0.95886 0.79461 1.21745 1.01626 0.90736 1.01890 1.22157 0.94134 0.85276 0.97881 1.86518 1.48444 1.16069 1.86909 1.45213 1.08785 1.73278 1.06206 1.17690 0.84401 0.78205 0.85518 1.90791 1.29767 1.46304 1.71233 1.20444 0.89469 1.04341 0.93083 1.21405 0.96901 0.94880 0.95016 1.20582 0.98961 0.99529 0.93195 1.20271 0.87631 0.98858 1.00596 1.21249 0.92824 1.04138 0.90457 1.72219 1.07322 1.26324 1.38916 1.78694 1.18813 1.40324 0.79698 1.72221 1.08859 1.24211 1.34398 1.21979 0.90139 1.01386 0.91701 1.22701 0.93465 0.87493 0.97131 0.93542 0.94760 0.90431 0.90673 0.88195 0.94286 0.93954 0.78322 0.76733 0.83731 0.83858 0.84158 0.93920 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.22 11.51 55.49 0.64 -26.58 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.22 -6.01 10.75 -15.06 -0.16 -6.17 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.66 16 9 N -0.61 -14.82 3.78 -184.70 -0.70 -15.52 16 10 C 0.16 3.77 6.79 -8.50 -0.06 3.72 16 11 C 0.12 2.30 0.77 -131.69 -0.10 2.20 16 12 C -0.12 -2.12 4.92 -26.73 -0.13 -2.25 16 13 C 0.08 1.18 6.82 37.16 0.25 1.44 16 14 O -0.57 -8.14 13.66 -35.23 -0.48 -8.62 16 15 N -0.68 -11.59 5.00 -48.52 -0.24 -11.83 16 16 C 0.56 10.23 7.58 -12.57 -0.10 10.14 16 17 O -0.51 -11.08 13.77 5.26 0.07 -11.01 16 18 C -0.06 -0.97 6.07 -102.50 -0.62 -1.60 16 19 C -0.06 -0.65 9.49 -39.30 -0.37 -1.02 16 20 C -0.10 -0.88 9.82 -40.30 -0.40 -1.27 16 21 C -0.05 -0.50 10.03 -39.24 -0.39 -0.89 16 22 C 0.07 1.00 7.17 -83.19 -0.60 0.41 16 23 N -0.60 -7.85 11.44 25.60 0.29 -7.55 16 24 S 0.78 9.19 23.60 -107.50 -2.54 6.65 16 25 N -0.55 -9.08 10.68 26.55 0.28 -8.79 16 26 C 0.11 1.77 7.06 -81.05 -0.57 1.20 16 27 C 0.12 2.25 7.41 -8.49 -0.06 2.19 16 28 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.03 0.85 8.01 -51.93 -0.42 0.44 16 30 H 0.08 2.17 7.12 -51.93 -0.37 1.80 16 31 H 0.07 1.32 8.00 -51.92 -0.42 0.90 16 32 H 0.10 2.02 5.71 -51.93 -0.30 1.73 16 33 H 0.04 0.53 7.90 -51.93 -0.41 0.12 16 34 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 35 H 0.37 3.28 9.12 45.56 0.42 3.69 16 36 H 0.40 5.66 6.72 -40.82 -0.27 5.38 16 37 H 0.15 1.31 6.38 -52.48 -0.33 0.98 16 38 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 41 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -37.32 359.72 -9.42 -46.74 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.74 Total: 6.54 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -3.40 Total: 7.89 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: 0.27 Total: -70.27 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.41 Total: -19.63 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 9.19 SS G_CDS: -2.54 Total: 6.65 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.32 -9.42 -46.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570768059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.263 kcal (2) G-P(sol) polarization free energy of solvation -37.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds