Wall clock time and date at job start Wed Apr 1 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99433 * 2 1 4 4 H 1.48494 * 109.47085 * 270.00087 * 3 2 1 5 5 H 1.48497 * 109.47107 * 30.00124 * 3 2 1 6 6 H 1.48500 * 109.46869 * 149.99993 * 3 2 1 7 7 C 1.37870 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00419 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00010 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.49580 * 59.93548 * 9 7 2 11 11 C 1.53041 * 109.49799 * 180.02562 * 9 7 2 12 12 C 1.53040 * 109.53733 * 181.34705 * 11 9 7 13 13 C 1.53196 * 109.31566 * 298.63811 * 12 11 9 14 14 N 1.46930 * 108.77461 * 54.63119 * 13 12 11 15 15 C 1.34781 * 120.62745 * 126.36970 * 14 13 12 16 16 O 1.21550 * 119.99792 * 185.83699 * 15 14 13 17 17 C 1.47855 * 119.99888 * 5.83663 * 15 14 13 18 18 C 1.39323 * 120.07497 * 41.51363 * 17 15 14 19 19 C 1.39348 * 119.70704 * 180.27183 * 18 17 15 20 20 C 1.47732 * 120.08199 * 179.74857 * 19 18 17 21 21 O 1.21477 * 120.00126 * 359.71783 * 20 19 18 22 22 O 1.34710 * 120.00238 * 179.72041 * 20 19 18 23 23 C 1.39762 * 119.83756 * 359.46827 * 19 18 17 24 24 C 1.38041 * 120.14006 * 0.23522 * 23 19 18 25 25 N 1.48016 * 119.84641 * 180.02562 * 24 23 19 26 26 O 1.21803 * 120.00290 * 0.02562 * 25 24 23 27 27 O 1.21803 * 120.00041 * 180.02562 * 25 24 23 28 28 C 1.38111 * 120.30350 * 0.04336 * 24 23 19 29 29 C 1.46923 * 118.73953 * 306.64829 * 14 13 12 30 30 H 0.96998 * 120.00687 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.45670 * 61.33598 * 11 9 7 32 32 H 1.08997 * 109.46081 * 301.36978 * 11 9 7 33 33 H 1.08994 * 109.50127 * 178.68366 * 12 11 9 34 34 H 1.09006 * 109.49632 * 58.58907 * 12 11 9 35 35 H 1.09004 * 109.58348 * 294.85025 * 13 12 11 36 36 H 1.08998 * 109.70359 * 174.49154 * 13 12 11 37 37 H 1.08002 * 120.14625 * 0.02562 * 18 17 15 38 38 H 0.96708 * 117.00012 * 179.97438 * 22 20 19 39 39 H 1.07998 * 119.92710 * 180.25375 * 23 19 18 40 40 H 1.08001 * 119.92149 * 180.02562 * 28 24 23 41 41 H 1.09002 * 109.58460 * 173.14493 * 29 14 13 42 42 H 1.09005 * 109.58380 * 293.56655 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6232 -2.5566 -0.8895 11 6 2.2453 -3.6627 -0.0005 12 6 1.4814 -4.9884 -0.0344 13 6 0.6055 -5.1007 1.2174 14 7 -0.2532 -3.9114 1.3020 15 6 -1.5897 -4.0367 1.4229 16 8 -2.2984 -3.0499 1.3853 17 6 -2.1937 -5.3744 1.6014 18 6 -1.5935 -6.3042 2.4478 19 6 -2.1662 -7.5647 2.6059 20 6 -1.5337 -8.5588 3.4970 21 8 -0.5104 -8.2797 4.0891 22 8 -2.0918 -9.7750 3.6531 23 6 -3.3436 -7.8840 1.9239 24 6 -3.9361 -6.9557 1.0917 25 7 -5.1833 -7.3007 0.3730 26 8 -5.6847 -8.4013 0.5170 27 8 -5.7082 -6.4838 -0.3624 28 6 -3.3704 -5.7067 0.9262 29 6 0.3722 -2.5831 1.2460 30 1 -0.4851 0.8400 -0.0004 31 1 2.8560 -3.6185 0.9013 32 1 2.8879 -3.5913 -0.8780 33 1 2.1901 -5.8162 -0.0580 34 1 0.8515 -5.0227 -0.9234 35 1 1.2390 -5.1577 2.1026 36 1 -0.0142 -5.9951 1.1533 37 1 -0.6863 -6.0505 2.9760 38 1 -1.6414 -10.3919 4.2462 39 1 -3.7909 -8.8591 2.0486 40 1 -3.8394 -4.9850 0.2739 41 1 -0.4014 -1.8168 1.1983 42 1 0.9863 -2.4307 2.1337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:44 Heat of formation + Delta-G solvation = -95.668647 kcal Electronic energy + Delta-G solvation = -30680.635457 eV Core-core repulsion = 26208.255322 eV Total energy + Delta-G solvation = -4472.380135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.49837 -41.18252 -40.20510 -38.66652 -36.96260 -36.80926 -36.67325 -33.82967 -32.66883 -32.38319 -31.77677 -29.91227 -26.99732 -25.86558 -25.41500 -25.15689 -23.31049 -22.20401 -21.81213 -20.56309 -19.49488 -19.06371 -18.57209 -18.29085 -17.80643 -17.26694 -16.98990 -16.67700 -16.28657 -16.17003 -15.99263 -15.40509 -14.75556 -14.36116 -14.10316 -13.93647 -13.67879 -13.42982 -13.10387 -12.85295 -12.77768 -12.67998 -12.32746 -12.13901 -12.03563 -11.81067 -11.59484 -11.36418 -11.26673 -11.14240 -11.04411 -10.66037 -10.58140 -10.36804 -10.16390 -10.03242 -10.00775 -9.64286 -9.25394 -9.08397 -8.54495 -8.03375 -6.09339 -4.18591 -0.59927 -0.20600 0.78682 0.98384 1.75861 2.24445 2.59090 3.02001 3.24898 3.28868 3.33713 3.35210 3.86375 3.93800 4.08696 4.22654 4.35481 4.38847 4.54904 4.80920 5.01100 5.07831 5.20720 5.22928 5.28248 5.39824 5.44980 5.53564 5.79187 5.85811 5.98110 6.05022 6.14879 6.44234 6.48518 6.68245 6.82235 6.90537 7.02023 7.25392 7.35629 7.48003 7.72196 7.81914 7.97042 8.24208 8.42827 8.85492 9.48000 10.96022 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.013502 B = 0.003043 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.329279 B = 9197.732909 C =10559.891926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.098 3.902 14 N -0.592 5.592 15 C 0.547 3.453 16 O -0.512 6.512 17 C -0.118 4.118 18 C 0.019 3.981 19 C -0.132 4.132 20 C 0.535 3.465 21 O -0.497 6.497 22 O -0.508 6.508 23 C 0.012 3.988 24 C -0.060 4.060 25 N 0.029 4.971 26 O -0.154 6.154 27 O -0.145 6.145 28 C 0.025 3.975 29 C 0.111 3.889 30 H 0.265 0.735 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.167 0.833 38 H 0.422 0.578 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.127 0.873 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 -19.779 6.074 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.026 4.026 14 N -0.323 5.323 15 C 0.331 3.669 16 O -0.388 6.388 17 C -0.122 4.122 18 C 0.001 3.999 19 C -0.134 4.134 20 C 0.378 3.622 21 O -0.385 6.385 22 O -0.320 6.320 23 C -0.007 4.007 24 C -0.143 4.143 25 N 0.551 4.449 26 O -0.370 6.370 27 O -0.363 6.363 28 C 0.005 3.995 29 C -0.008 4.008 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.184 0.816 38 H 0.282 0.718 39 H 0.190 0.810 40 H 0.189 0.811 41 H 0.145 0.855 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.595 -18.579 6.322 19.952 hybrid contribution 0.467 0.282 0.194 0.579 sum -3.128 -18.297 6.516 19.673 Atomic orbital electron populations 1.69857 1.05750 1.27052 1.49114 1.25053 0.94905 0.99349 0.94674 0.86571 0.79799 0.83347 0.78179 1.20624 1.21127 1.19883 1.21049 0.92963 0.89940 1.52125 0.92235 1.18901 0.92625 0.92512 0.93918 0.95155 1.21641 0.98595 0.93755 1.00909 1.21952 0.98641 0.99528 0.97068 1.22005 0.93608 0.87421 0.99531 1.48514 1.04550 1.09732 1.69545 1.17814 0.83125 0.86762 0.79161 1.90887 1.60392 1.37830 1.49738 1.20218 0.95856 0.96741 0.99401 1.22070 0.97271 0.89417 0.91186 1.18781 0.97502 0.94536 1.02610 1.20294 0.81710 0.80971 0.79226 1.90970 1.23370 1.78839 1.45294 1.84522 1.56842 1.24863 1.65808 1.21386 0.91559 0.99527 0.88222 1.20840 0.91027 0.97804 1.04633 1.43429 1.01458 1.00448 0.99552 1.94546 1.64961 1.08823 1.68709 1.94612 1.63108 1.45301 1.33325 1.21389 0.91330 0.93366 0.93379 1.22400 0.98968 0.80279 0.99203 0.92504 0.92960 0.92713 0.91857 0.91987 0.91057 0.91339 0.81584 0.71803 0.81048 0.81074 0.85549 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.64 11.39 55.43 0.63 -24.00 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -13.47 8.57 -34.44 -0.30 -13.77 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 0.91 2.24 -91.87 -0.21 0.71 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.04 5.11 -26.69 -0.14 -2.18 16 12 C -0.13 -1.96 6.08 -26.61 -0.16 -2.12 16 13 C 0.10 1.34 4.93 -3.71 -0.02 1.32 16 14 N -0.59 -10.56 2.98 -174.13 -0.52 -11.08 16 15 C 0.55 9.72 7.30 -12.32 -0.09 9.63 16 16 O -0.51 -11.36 16.36 5.32 0.09 -11.27 16 17 C -0.12 -1.53 5.08 -105.02 -0.53 -2.07 16 18 C 0.02 0.20 6.93 -38.76 -0.27 -0.07 16 19 C -0.13 -1.18 5.87 -105.03 -0.62 -1.80 16 20 C 0.54 4.43 8.27 34.61 0.29 4.71 16 21 O -0.50 -5.44 17.13 -19.25 -0.33 -5.77 16 22 O -0.51 -2.61 12.67 -40.52 -0.51 -3.13 16 23 C 0.01 0.11 9.12 -39.08 -0.36 -0.25 16 24 C -0.06 -0.66 6.84 -80.07 -0.55 -1.21 16 25 N 0.03 0.37 4.45 33.90 0.15 0.52 16 26 O -0.15 -1.92 18.43 -29.46 -0.54 -2.46 16 27 O -0.15 -2.03 18.43 -29.46 -0.54 -2.58 16 28 C 0.03 0.31 9.15 -39.09 -0.36 -0.05 16 29 C 0.11 2.46 5.39 -3.93 -0.02 2.44 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 36 H 0.07 0.77 4.80 -51.93 -0.25 0.52 16 37 H 0.17 1.69 6.30 -52.49 -0.33 1.36 16 38 H 0.42 0.30 9.11 45.56 0.42 0.72 16 39 H 0.17 1.19 7.13 -52.49 -0.37 0.82 16 40 H 0.17 2.20 7.59 -52.49 -0.40 1.80 16 41 H 0.13 3.33 5.11 -51.93 -0.27 3.06 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -31.98 361.95 -8.26 -40.25 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.70 Total: 1.63 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.42 Total: -3.10 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.26 Total: -34.56 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.84 Total: -25.21 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.98 -8.26 -40.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.423 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds