Wall clock time and date at job start Wed Apr 1 2020 04:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48503 * 109.47362 * 240.00106 * 3 2 1 5 5 H 1.48500 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47248 * 120.00208 * 3 2 1 7 7 C 1.38953 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99729 * 157.53858 * 7 2 1 9 9 N 1.37093 * 120.00216 * 337.52878 * 7 2 1 10 10 C 1.46505 * 119.99874 * 324.05422 * 9 7 2 11 11 C 1.52996 * 109.47234 * 269.99803 * 10 9 7 12 12 C 1.50697 * 109.47171 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99892 * 0.02562 * 12 11 10 14 14 O 1.34224 * 120.00208 * 179.97438 * 12 11 10 15 15 C 1.34776 * 119.99885 * 144.05435 * 9 7 2 16 16 O 1.21294 * 119.99825 * 174.83222 * 15 9 7 17 17 C 1.50693 * 119.99979 * 354.83602 * 15 9 7 18 18 H 1.08998 * 115.55292 * 62.57029 * 17 15 9 19 19 C 1.53009 * 117.49938 * 276.89951 * 17 15 9 20 20 C 1.52999 * 59.99932 * 252.51208 * 19 17 15 21 21 H 1.09002 * 117.49656 * 107.48811 * 20 19 17 22 22 C 1.50699 * 117.49629 * 252.50994 * 20 19 17 23 23 C 1.38227 * 120.00208 * 8.34696 * 22 20 19 24 24 C 1.38238 * 119.99920 * 179.76603 * 23 22 20 25 25 C 1.38231 * 120.00213 * 0.51143 * 24 23 22 26 26 N 1.48021 * 120.00181 * 179.72292 * 25 24 23 27 27 O 1.21802 * 119.99791 * 180.02562 * 26 25 24 28 28 O 1.21794 * 119.99858 * 0.02562 * 26 25 24 29 29 C 1.38234 * 119.99691 * 359.74558 * 25 24 23 30 30 C 1.38238 * 119.99601 * 188.62699 * 22 20 19 31 31 H 0.96996 * 119.99774 * 4.83979 * 1 2 3 32 32 H 1.09005 * 109.46697 * 149.99939 * 10 9 7 33 33 H 1.08997 * 109.47229 * 30.00363 * 10 9 7 34 34 H 1.09005 * 109.47167 * 60.00424 * 11 10 9 35 35 H 1.08995 * 109.47075 * 300.00054 * 11 10 9 36 36 H 0.96705 * 117.00358 * 180.02562 * 14 12 11 37 37 H 1.09000 * 117.49237 * 0.02562 * 19 17 15 38 38 H 1.09000 * 117.49677 * 145.01646 * 19 17 15 39 39 H 1.07998 * 120.00019 * 0.02562 * 23 22 20 40 40 H 1.07999 * 119.99858 * 180.23456 * 24 23 22 41 41 H 1.08007 * 120.00129 * 179.97438 * 29 25 24 42 42 H 1.07994 * 120.00234 * 359.97438 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6966 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0275 -1.2387 -0.3579 9 7 1.4015 -2.3458 0.4527 10 6 0.4678 -2.2812 1.5798 11 6 1.2347 -2.4754 2.8893 12 6 0.2743 -2.4083 4.0486 13 8 -0.9029 -2.2245 3.8480 14 8 0.7264 -2.5538 5.3040 15 6 1.6635 -3.5283 -0.1385 16 8 1.2004 -4.5513 0.3200 17 6 2.5317 -3.5795 -1.3691 18 1 3.5588 -3.2401 -1.2343 19 6 1.8649 -3.2951 -2.7166 20 6 2.2885 -4.7210 -2.3583 21 1 1.5004 -5.4350 -2.1190 22 6 3.4874 -5.2907 -3.0719 23 6 4.2618 -4.4785 -3.8789 24 6 5.3644 -5.0000 -4.5296 25 6 5.6863 -6.3361 -4.3816 26 7 6.8633 -6.8959 -5.0832 27 8 7.1467 -8.0733 -4.9532 28 8 7.5484 -6.1791 -5.7906 29 6 4.9088 -7.1496 -3.5788 30 6 3.8093 -6.6269 -2.9239 31 1 -0.4849 0.8370 -0.0709 32 1 -0.2806 -3.0670 1.4770 33 1 -0.0250 -1.3090 1.5881 34 1 1.9831 -1.6896 2.9921 35 1 1.7274 -3.4476 2.8810 36 1 0.0726 -2.5035 6.0148 37 1 0.7983 -3.0707 -2.7127 38 1 2.4534 -2.7690 -3.4682 39 1 4.0079 -3.4355 -3.9978 40 1 5.9716 -4.3645 -5.1571 41 1 5.1600 -8.1936 -3.4635 42 1 3.2018 -7.2624 -2.2967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:47 Heat of formation + Delta-G solvation = -75.945961 kcal Electronic energy + Delta-G solvation = -29530.381328 eV Core-core repulsion = 25058.856433 eV Total energy + Delta-G solvation = -4471.524895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.24921 -40.15707 -39.87639 -38.81586 -36.64524 -36.45395 -35.80858 -34.98026 -32.10959 -31.83563 -31.49463 -30.61509 -26.91349 -25.40964 -24.92933 -23.67131 -22.97412 -22.46628 -20.80561 -20.33179 -19.45521 -19.23788 -18.72625 -17.86619 -17.60624 -17.25209 -16.61739 -16.10846 -15.83280 -15.49291 -15.42217 -15.18320 -14.60363 -14.55379 -14.03739 -13.96664 -13.44631 -13.32070 -13.09877 -12.78704 -12.59071 -12.17140 -11.91334 -11.68592 -11.61392 -11.42528 -11.38851 -11.25589 -11.23985 -11.23557 -11.18320 -10.89846 -10.78410 -10.57367 -10.28916 -10.18503 -10.06638 -9.56858 -9.36468 -9.11543 -8.70261 -7.78326 -6.57836 -4.27605 -0.26688 0.80403 1.24100 1.33176 2.58669 2.97184 3.05490 3.09690 3.10054 3.31241 3.55647 3.91992 4.11396 4.18680 4.29148 4.32972 4.66237 4.73301 4.81426 4.82944 5.04292 5.14171 5.26223 5.37395 5.49367 5.54155 5.59372 5.69261 5.69971 5.83365 5.97030 6.04136 6.10836 6.15601 6.23247 6.35445 6.38746 6.42224 6.69750 6.76512 7.14461 7.30421 7.55781 7.65196 8.13923 8.22654 8.85944 9.23907 9.66903 10.43801 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.002520 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.791309 B =11107.448703 C =12440.343879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.050 3.950 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.350 4.350 8 H 0.092 0.908 9 N -0.427 5.427 10 C 0.125 3.875 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.524 6.524 15 C 0.493 3.507 16 O -0.601 6.601 17 C -0.115 4.115 18 H 0.117 0.883 19 C -0.133 4.133 20 C -0.129 4.129 21 H 0.127 0.873 22 C 0.022 3.978 23 C -0.123 4.123 24 C -0.049 4.049 25 C -0.061 4.061 26 N 0.033 4.967 27 O -0.169 6.169 28 O -0.168 6.168 29 C -0.051 4.051 30 C -0.113 4.113 31 H 0.275 0.725 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.402 0.598 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -5.037 -2.816 8.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.158 4.158 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.477 4.477 8 H 0.110 0.890 9 N -0.144 5.144 10 C 0.001 3.999 11 C -0.163 4.163 12 C 0.325 3.675 13 O -0.402 6.402 14 O -0.336 6.336 15 C 0.281 3.719 16 O -0.487 6.487 17 C -0.136 4.136 18 H 0.135 0.865 19 C -0.170 4.170 20 C -0.148 4.148 21 H 0.145 0.855 22 C 0.022 3.978 23 C -0.142 4.142 24 C -0.068 4.068 25 C -0.144 4.144 26 N 0.551 4.449 27 O -0.384 6.384 28 O -0.383 6.383 29 C -0.071 4.071 30 C -0.132 4.132 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.259 0.741 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.661 -5.063 -2.567 7.345 hybrid contribution 0.392 0.888 0.327 1.025 sum 5.053 -4.175 -2.240 6.927 Atomic orbital electron populations 1.69839 1.06326 1.28551 1.43800 1.25391 0.95047 0.99962 0.95431 0.86227 0.79456 0.81130 0.79321 1.19583 1.20793 1.19642 1.19338 0.97520 0.84842 1.46015 0.89006 1.43335 1.39434 1.05920 1.25690 1.21248 0.91112 1.05822 0.81752 1.21838 0.98334 1.05156 0.91016 1.23767 0.88920 0.71403 0.83388 1.90705 1.19050 1.44960 1.85494 1.84588 1.46339 1.85057 1.17609 1.19491 0.83739 0.84182 0.84472 1.90556 1.56864 1.34447 1.66846 1.21950 1.00935 0.99589 0.91155 0.86509 1.22988 1.02567 0.94390 0.97030 1.21293 0.97328 0.93179 1.02976 0.85465 1.19780 0.93464 0.93095 0.91501 1.21235 0.94081 1.01658 0.97192 1.21023 0.96391 0.92221 0.97207 1.21090 0.92157 0.95623 1.05506 1.43656 1.01488 1.00645 0.99141 1.94522 1.75381 1.00244 1.68207 1.94523 1.49375 1.58487 1.35904 1.21029 0.92751 1.00798 0.92478 1.21114 0.96716 0.95383 0.99942 0.91484 0.91633 0.86425 0.87700 0.88396 0.74062 0.87467 0.88180 0.83101 0.83064 0.83087 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.58 11.41 55.50 0.63 -19.95 16 2 C 0.05 1.12 4.94 -17.46 -0.09 1.03 16 3 Si 0.91 17.57 29.61 -169.99 -5.03 12.54 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 7 C -0.35 -7.70 8.62 -14.93 -0.13 -7.83 16 8 H 0.09 1.91 7.26 -52.48 -0.38 1.53 16 9 N -0.43 -9.46 2.53 -114.81 -0.29 -9.75 16 10 C 0.12 2.76 4.26 -4.04 -0.02 2.74 16 11 C -0.12 -2.30 6.13 -27.89 -0.17 -2.47 16 12 C 0.48 8.44 8.33 36.00 0.30 8.74 16 13 O -0.51 -10.51 16.74 -18.75 -0.31 -10.83 16 14 O -0.52 -7.12 13.42 -39.24 -0.53 -7.65 16 15 C 0.49 10.45 7.29 -10.99 -0.08 10.37 16 16 O -0.60 -14.11 16.26 5.55 0.09 -14.02 16 17 C -0.12 -1.92 4.41 -91.77 -0.41 -2.32 16 18 H 0.12 1.81 7.86 -51.93 -0.41 1.40 16 19 C -0.13 -1.91 9.56 -26.73 -0.26 -2.16 16 20 C -0.13 -1.78 5.56 -91.77 -0.51 -2.29 16 21 H 0.13 1.87 7.94 -51.93 -0.41 1.46 16 22 C 0.02 0.25 5.61 -104.63 -0.59 -0.33 16 23 C -0.12 -1.27 9.30 -39.59 -0.37 -1.64 16 24 C -0.05 -0.52 9.56 -39.58 -0.38 -0.89 16 25 C -0.06 -0.71 6.85 -79.95 -0.55 -1.26 16 26 N 0.03 0.45 4.45 33.96 0.15 0.60 16 27 O -0.17 -2.38 18.45 -29.46 -0.54 -2.92 16 28 O -0.17 -2.37 18.45 -29.46 -0.54 -2.92 16 29 C -0.05 -0.54 9.56 -39.58 -0.38 -0.92 16 30 C -0.11 -1.18 9.74 -39.58 -0.39 -1.57 16 31 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 32 H 0.07 1.56 7.46 -51.93 -0.39 1.17 16 33 H 0.12 2.86 5.40 -51.93 -0.28 2.58 16 34 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.40 3.52 9.10 45.56 0.41 3.93 16 37 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.10 1.18 6.17 -51.93 -0.32 0.86 16 39 H 0.15 1.34 6.02 -52.49 -0.32 1.03 16 40 H 0.15 1.35 7.61 -52.49 -0.40 0.95 16 41 H 0.15 1.34 7.61 -52.48 -0.40 0.94 16 42 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -29.38 375.61 -8.43 -37.81 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -3.72 Total: 12.24 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -4.00 Total: -0.82 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: 0.49 Total: -29.10 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.84 Total: -38.34 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.38 -8.43 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.133 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds