Wall clock time and date at job start Wed Apr 1 2020 04:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48503 * 109.47362 * 240.00106 * 3 2 1 5 5 H 1.48500 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47248 * 120.00208 * 3 2 1 7 7 C 1.38953 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99729 * 157.53858 * 7 2 1 9 9 N 1.37093 * 120.00216 * 337.52878 * 7 2 1 10 10 C 1.46505 * 119.99874 * 324.05422 * 9 7 2 11 11 C 1.52996 * 109.47234 * 269.99803 * 10 9 7 12 12 C 1.50697 * 109.47171 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99892 * 0.02562 * 12 11 10 14 14 O 1.34224 * 120.00208 * 179.97438 * 12 11 10 15 15 C 1.34776 * 119.99885 * 144.05435 * 9 7 2 16 16 O 1.21294 * 119.99825 * 174.83222 * 15 9 7 17 17 C 1.50693 * 119.99979 * 354.83602 * 15 9 7 18 18 H 1.08998 * 115.55292 * 62.57029 * 17 15 9 19 19 C 1.53009 * 117.49938 * 276.89951 * 17 15 9 20 20 C 1.52999 * 59.99932 * 252.51208 * 19 17 15 21 21 H 1.09002 * 117.49656 * 107.48811 * 20 19 17 22 22 C 1.50699 * 117.49629 * 252.50994 * 20 19 17 23 23 C 1.38227 * 120.00208 * 8.34696 * 22 20 19 24 24 C 1.38238 * 119.99920 * 179.76603 * 23 22 20 25 25 C 1.38231 * 120.00213 * 0.51143 * 24 23 22 26 26 N 1.48021 * 120.00181 * 179.72292 * 25 24 23 27 27 O 1.21802 * 119.99791 * 180.02562 * 26 25 24 28 28 O 1.21794 * 119.99858 * 0.02562 * 26 25 24 29 29 C 1.38234 * 119.99691 * 359.74558 * 25 24 23 30 30 C 1.38238 * 119.99601 * 188.62699 * 22 20 19 31 31 H 0.96996 * 119.99774 * 4.83979 * 1 2 3 32 32 H 1.09005 * 109.46697 * 149.99939 * 10 9 7 33 33 H 1.08997 * 109.47229 * 30.00363 * 10 9 7 34 34 H 1.09005 * 109.47167 * 60.00424 * 11 10 9 35 35 H 1.08995 * 109.47075 * 300.00054 * 11 10 9 36 36 H 0.96705 * 117.00358 * 180.02562 * 14 12 11 37 37 H 1.09000 * 117.49237 * 0.02562 * 19 17 15 38 38 H 1.09000 * 117.49677 * 145.01646 * 19 17 15 39 39 H 1.07998 * 120.00019 * 0.02562 * 23 22 20 40 40 H 1.07999 * 119.99858 * 180.23456 * 24 23 22 41 41 H 1.08007 * 120.00129 * 179.97438 * 29 25 24 42 42 H 1.07994 * 120.00234 * 359.97438 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6966 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0275 -1.2387 -0.3579 9 7 1.4015 -2.3458 0.4527 10 6 0.4678 -2.2812 1.5798 11 6 1.2347 -2.4754 2.8893 12 6 0.2743 -2.4083 4.0486 13 8 -0.9029 -2.2245 3.8480 14 8 0.7264 -2.5538 5.3040 15 6 1.6635 -3.5283 -0.1385 16 8 1.2004 -4.5513 0.3200 17 6 2.5317 -3.5795 -1.3691 18 1 3.5588 -3.2401 -1.2343 19 6 1.8649 -3.2951 -2.7166 20 6 2.2885 -4.7210 -2.3583 21 1 1.5004 -5.4350 -2.1190 22 6 3.4874 -5.2907 -3.0719 23 6 4.2618 -4.4785 -3.8789 24 6 5.3644 -5.0000 -4.5296 25 6 5.6863 -6.3361 -4.3816 26 7 6.8633 -6.8959 -5.0832 27 8 7.1467 -8.0733 -4.9532 28 8 7.5484 -6.1791 -5.7906 29 6 4.9088 -7.1496 -3.5788 30 6 3.8093 -6.6269 -2.9239 31 1 -0.4849 0.8370 -0.0709 32 1 -0.2806 -3.0670 1.4770 33 1 -0.0250 -1.3090 1.5881 34 1 1.9831 -1.6896 2.9921 35 1 1.7274 -3.4476 2.8810 36 1 0.0726 -2.5035 6.0148 37 1 0.7983 -3.0707 -2.7127 38 1 2.4534 -2.7690 -3.4682 39 1 4.0079 -3.4355 -3.9978 40 1 5.9716 -4.3645 -5.1571 41 1 5.1600 -8.1936 -3.4635 42 1 3.2018 -7.2624 -2.2967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:46 Heat of formation + Delta-G solvation = -91.039137 kcal Electronic energy + Delta-G solvation = -29531.035818 eV Core-core repulsion = 25058.856433 eV Total energy + Delta-G solvation = -4472.179384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.24497 -41.43157 -41.11468 -40.20027 -37.73330 -37.67478 -37.13005 -36.65032 -33.79872 -32.86236 -32.40267 -32.09254 -27.95618 -27.08892 -26.43898 -24.59164 -24.11922 -23.65180 -22.02603 -21.59648 -20.88024 -20.36981 -19.74264 -19.26958 -18.67527 -18.60082 -18.03897 -17.56341 -17.19820 -16.84306 -16.51934 -16.19478 -16.07591 -15.93779 -15.43798 -14.90959 -14.73143 -14.37578 -14.35084 -14.25527 -13.96100 -13.58510 -13.25722 -12.96763 -12.82398 -12.79782 -12.70120 -12.57864 -12.55568 -12.38076 -12.30253 -12.25283 -12.12179 -12.00969 -11.77496 -11.68055 -11.33816 -11.03532 -10.43436 -10.34991 -10.08586 -9.52851 -8.28806 -6.03287 -1.24539 0.00720 0.26873 0.38763 1.17206 1.45162 1.54376 1.60816 1.88178 2.02361 2.18735 2.37180 2.87483 2.99170 3.12432 3.42758 3.48396 3.54371 3.77798 3.89690 3.97554 4.03401 4.07162 4.13177 4.24029 4.35282 4.43702 4.53778 4.66661 4.72456 4.73438 4.81200 4.92436 5.00160 5.06630 5.16819 5.18467 5.34702 5.35346 5.50063 5.53707 5.59174 5.95719 6.41387 6.49619 6.98413 7.14257 7.55385 7.98451 8.73686 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.002520 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.791309 B =11107.448703 C =12440.343879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.011 3.989 3 Si 0.974 3.026 4 H -0.257 1.257 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.351 4.351 8 H 0.108 0.892 9 N -0.439 5.439 10 C 0.128 3.872 11 C -0.116 4.116 12 C 0.494 3.506 13 O -0.550 6.550 14 O -0.508 6.508 15 C 0.482 3.518 16 O -0.632 6.632 17 C -0.135 4.135 18 H 0.134 0.866 19 C -0.124 4.124 20 C -0.106 4.106 21 H 0.113 0.887 22 C 0.015 3.985 23 C -0.114 4.114 24 C -0.046 4.046 25 C -0.071 4.071 26 N 0.033 4.967 27 O -0.185 6.185 28 O -0.180 6.180 29 C -0.048 4.048 30 C -0.110 4.110 31 H 0.272 0.728 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.427 0.573 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.619 -4.552 -3.158 9.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.181 1.181 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.478 4.478 8 H 0.126 0.874 9 N -0.155 5.155 10 C 0.004 3.996 11 C -0.155 4.155 12 C 0.337 3.663 13 O -0.441 6.441 14 O -0.321 6.321 15 C 0.272 3.728 16 O -0.521 6.521 17 C -0.156 4.156 18 H 0.151 0.849 19 C -0.161 4.161 20 C -0.125 4.125 21 H 0.131 0.869 22 C 0.014 3.986 23 C -0.133 4.133 24 C -0.064 4.064 25 C -0.154 4.154 26 N 0.548 4.452 27 O -0.397 6.397 28 O -0.393 6.393 29 C -0.067 4.067 30 C -0.129 4.129 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.288 0.712 37 H 0.102 0.898 38 H 0.152 0.848 39 H 0.187 0.813 40 H 0.185 0.815 41 H 0.183 0.817 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.649 -4.599 -2.892 8.586 hybrid contribution -0.269 0.665 0.501 0.875 sum 6.380 -3.934 -2.391 7.868 Atomic orbital electron populations 1.69971 1.07977 1.28947 1.45659 1.26134 0.95417 1.02754 0.95025 0.85267 0.78056 0.77052 0.79798 1.18083 1.21919 1.19261 1.19690 0.98003 0.84698 1.45371 0.87430 1.43560 1.39360 1.06575 1.26034 1.21001 0.91320 1.03304 0.84004 1.21614 0.98166 1.05735 0.89973 1.23418 0.87889 0.70614 0.84349 1.90704 1.20360 1.46775 1.86229 1.84505 1.46825 1.84025 1.16772 1.20272 0.83757 0.83344 0.85379 1.90521 1.58248 1.35344 1.67960 1.21873 1.00848 1.02957 0.89920 0.84866 1.23050 1.01576 0.95319 0.96204 1.21126 0.97704 0.92440 1.01189 0.86867 1.19662 0.93015 0.93695 0.92195 1.21373 0.93368 1.02302 0.96217 1.21218 0.96382 0.91824 0.97021 1.21312 0.91720 0.96430 1.05926 1.43914 1.01819 1.00503 0.99002 1.94515 1.75894 1.00668 1.68620 1.94510 1.50008 1.58411 1.36417 1.21178 0.92283 1.01450 0.91835 1.21242 0.96653 0.95236 0.99747 0.91864 0.94630 0.88644 0.86521 0.87971 0.71157 0.89844 0.84841 0.81251 0.81453 0.81735 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.01 11.41 21.67 0.25 -43.77 16 2 C 0.01 0.49 4.94 84.93 0.42 0.91 16 3 Si 0.97 35.18 29.61 68.60 2.03 37.21 16 4 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 5 H -0.29 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.35 -15.22 8.62 84.04 0.72 -14.49 16 8 H 0.11 4.25 7.26 -2.91 -0.02 4.23 16 9 N -0.44 -19.69 2.53 -635.53 -1.61 -21.30 16 10 C 0.13 5.88 4.26 86.38 0.37 6.25 16 11 C -0.12 -4.31 6.13 29.85 0.18 -4.12 16 12 C 0.49 17.10 8.33 71.23 0.59 17.69 16 13 O -0.55 -22.87 16.74 21.96 0.37 -22.50 16 14 O -0.51 -12.79 13.42 -51.36 -0.69 -13.48 16 15 C 0.48 20.67 7.29 87.66 0.64 21.31 16 16 O -0.63 -30.47 16.26 -3.07 -0.05 -30.52 16 17 C -0.14 -4.34 4.41 -11.54 -0.05 -4.39 16 18 H 0.13 3.81 7.86 -2.39 -0.02 3.79 16 19 C -0.12 -3.39 9.56 30.60 0.29 -3.09 16 20 C -0.11 -2.77 5.56 -11.54 -0.06 -2.83 16 21 H 0.11 3.30 7.94 -2.39 -0.02 3.28 16 22 C 0.01 0.30 5.61 -19.87 -0.11 0.19 16 23 C -0.11 -1.98 9.30 22.27 0.21 -1.77 16 24 C -0.05 -0.81 9.56 22.27 0.21 -0.60 16 25 C -0.07 -1.50 6.85 36.37 0.25 -1.25 16 26 N 0.03 0.86 4.45 -46.47 -0.21 0.65 16 27 O -0.18 -5.00 18.45 18.88 0.35 -4.65 16 28 O -0.18 -4.82 18.45 18.89 0.35 -4.47 16 29 C -0.05 -0.91 9.56 22.27 0.21 -0.69 16 30 C -0.11 -2.06 9.74 22.27 0.22 -1.85 16 31 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 32 H 0.04 1.79 7.46 -2.38 -0.02 1.77 16 33 H 0.10 4.84 5.40 -2.39 -0.01 4.83 16 34 H 0.12 4.03 8.14 -2.38 -0.02 4.01 16 35 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 36 H 0.43 6.45 9.10 -74.05 -0.67 5.77 16 37 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.13 2.69 6.17 -2.39 -0.01 2.67 16 39 H 0.17 2.28 6.02 -2.91 -0.02 2.26 16 40 H 0.17 2.45 7.61 -2.91 -0.02 2.42 16 41 H 0.17 2.58 7.61 -2.91 -0.02 2.56 16 42 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -65.14 375.61 5.31 -59.83 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.43 Total: 31.75 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 4.09 Total: 11.25 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -1.57 Total: -64.42 kcal Atomic # 8 Polarization: -75.94 SS G_CDS: 0.33 Total: -75.62 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Total: -65.14 5.31 -59.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.210 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds