Wall clock time and date at job start Wed Apr 1 2020 04:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86808 * 120.00009 * 2 1 4 4 H 1.48495 * 109.47121 * 269.99922 * 3 2 1 5 5 H 1.48501 * 109.46922 * 30.00019 * 3 2 1 6 6 H 1.48498 * 109.46878 * 149.99850 * 3 2 1 7 7 C 1.38950 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00073 * 157.80813 * 7 2 1 9 9 N 1.37095 * 119.99569 * 337.81121 * 7 2 1 10 10 C 1.46494 * 120.00474 * 326.00937 * 9 7 2 11 11 C 1.52994 * 109.47459 * 264.54447 * 10 9 7 12 12 C 1.50703 * 109.47449 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99485 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00227 * 179.97438 * 12 11 10 15 15 C 1.34786 * 119.99605 * 146.01322 * 9 7 2 16 16 O 1.21290 * 119.99744 * 179.97438 * 15 9 7 17 17 C 1.50698 * 120.00116 * 0.02562 * 15 9 7 18 18 C 1.52998 * 109.46982 * 179.97438 * 17 15 9 19 19 H 1.09001 * 109.44051 * 54.92333 * 18 17 15 20 20 O 1.42916 * 109.44226 * 294.99839 * 18 17 15 21 21 C 1.36010 * 117.02476 * 285.32588 * 20 18 17 22 22 C 1.38460 * 120.42792 * 148.47280 * 21 20 18 23 23 C 1.38292 * 119.90047 * 179.41612 * 22 21 20 24 24 C 1.38279 * 120.24115 * 359.97438 * 23 22 21 25 25 C 1.38267 * 120.18814 * 0.24955 * 24 23 22 26 26 C 1.38568 * 119.84609 * 0.02562 * 25 24 23 27 27 N 1.40170 * 120.54049 * 179.07733 * 26 25 24 28 28 C 1.34967 * 119.16971 * 191.68988 * 27 26 25 29 29 O 1.21289 * 120.15134 * 186.07468 * 28 27 26 30 30 H 0.97001 * 119.99764 * 0.02562 * 1 2 3 31 31 H 1.09009 * 109.46880 * 24.54600 * 10 9 7 32 32 H 1.09005 * 109.47227 * 144.54045 * 10 9 7 33 33 H 1.09000 * 109.47092 * 300.00107 * 11 10 9 34 34 H 1.09005 * 109.47229 * 59.99599 * 11 10 9 35 35 H 0.96702 * 116.99826 * 179.97438 * 14 12 11 36 36 H 1.09006 * 109.46783 * 299.99800 * 17 15 9 37 37 H 1.09000 * 109.47249 * 59.99845 * 17 15 9 38 38 H 1.08000 * 120.04996 * 359.43527 * 22 21 20 39 39 H 1.07995 * 119.87867 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.90738 * 180.23395 * 24 23 22 41 41 H 1.07999 * 120.07753 * 180.02562 * 25 24 23 42 42 H 0.97001 * 120.41191 * 11.71606 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0289 -1.2381 -0.3527 9 7 1.3996 -2.3464 0.4495 10 6 0.4287 -2.2775 1.5443 11 6 1.1316 -2.5802 2.8691 12 6 0.1330 -2.5087 3.9955 13 8 -1.0225 -2.2433 3.7624 14 8 0.5269 -2.7409 5.2575 15 6 1.6938 -3.5337 -0.1166 16 8 1.1550 -4.5451 0.2809 17 6 2.6930 -3.6048 -1.2424 18 6 2.8430 -5.0569 -1.7003 19 1 1.8636 -5.4583 -1.9606 20 8 3.4092 -5.8332 -0.6423 21 6 4.7376 -5.6711 -0.3995 22 6 5.2383 -5.8128 0.8836 23 6 6.5927 -5.6575 1.1162 24 6 7.4492 -5.3617 0.0717 25 6 6.9559 -5.2141 -1.2115 26 6 5.5990 -5.3629 -1.4501 27 7 5.0806 -5.1975 -2.7418 28 6 3.7440 -5.1116 -2.9082 29 8 3.2698 -5.0791 -4.0241 30 1 -0.4850 0.8401 -0.0004 31 1 -0.0048 -1.2780 1.5831 32 1 -0.3610 -3.0098 1.3763 33 1 1.5651 -3.5796 2.8303 34 1 1.9213 -1.8479 3.0371 35 1 -0.1495 -2.6831 5.9462 36 1 2.3450 -2.9947 -2.0760 37 1 3.6571 -3.2317 -0.8967 38 1 4.5723 -6.0445 1.7016 39 1 6.9828 -5.7676 2.1171 40 1 8.5065 -5.2453 0.2587 41 1 7.6265 -4.9835 -2.0261 42 1 5.6750 -5.1459 -3.5066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:44 Heat of formation + Delta-G solvation = -161.252693 kcal Electronic energy + Delta-G solvation = -31276.255725 eV Core-core repulsion = 26801.031652 eV Total energy + Delta-G solvation = -4475.224073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51264 -39.84404 -38.83863 -38.64261 -37.31470 -35.81756 -35.13517 -34.97997 -32.16007 -31.79320 -30.63255 -30.21165 -28.95072 -25.73038 -25.24699 -23.63421 -23.29540 -22.81448 -20.61246 -19.43926 -19.23360 -18.82870 -17.88080 -17.80973 -17.06709 -16.24586 -16.19523 -15.96191 -15.74043 -15.52551 -15.42298 -14.99772 -14.65503 -14.54113 -14.13988 -14.04688 -13.88649 -13.62418 -13.12529 -12.84671 -12.74314 -12.54530 -12.40911 -12.10946 -11.89047 -11.41881 -11.33169 -11.23379 -11.15632 -11.05356 -10.97410 -10.84108 -10.70192 -10.50652 -10.16417 -10.08687 -9.94952 -9.24778 -8.69365 -8.60718 -7.91132 -7.71852 -6.50665 -4.19963 1.05695 1.24279 2.31946 2.65734 2.78062 3.02711 3.14620 3.16837 3.38925 3.40340 3.73746 3.75115 3.98842 4.04396 4.54744 4.73353 4.85161 4.89042 5.04739 5.13992 5.24763 5.30963 5.40826 5.58291 5.75589 5.77499 5.88768 5.96074 6.01526 6.09718 6.16713 6.24849 6.31907 6.39613 6.52145 6.64837 6.79314 6.80860 6.84214 7.23157 7.36512 7.46068 7.73429 7.78925 8.20481 8.29559 8.93186 9.32947 9.76322 10.50556 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.009179 B = 0.004079 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.776331 B = 6863.489785 C = 7888.792034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.047 3.953 3 Si 0.910 3.090 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.353 4.353 8 H 0.091 0.909 9 N -0.434 5.434 10 C 0.128 3.872 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.477 3.523 16 O -0.588 6.588 17 C -0.143 4.143 18 C 0.101 3.899 19 H 0.154 0.846 20 O -0.278 6.278 21 C 0.089 3.911 22 C -0.107 4.107 23 C -0.111 4.111 24 C -0.119 4.119 25 C -0.127 4.127 26 C 0.089 3.911 27 N -0.661 5.661 28 C 0.499 3.501 29 O -0.509 6.509 30 H 0.273 0.727 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.401 0.599 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.212 -6.352 3.186 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.480 4.480 8 H 0.109 0.891 9 N -0.153 5.153 10 C 0.004 3.996 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.265 3.735 16 O -0.473 6.473 17 C -0.183 4.183 18 C 0.041 3.959 19 H 0.171 0.829 20 O -0.192 6.192 21 C 0.041 3.959 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.007 4.007 27 N -0.307 5.307 28 C 0.286 3.714 29 O -0.383 6.383 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.259 0.741 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 12.149 -6.740 2.557 14.127 hybrid contribution 0.431 1.296 -0.098 1.370 sum 12.580 -5.443 2.459 13.926 Atomic orbital electron populations 1.69931 1.06258 1.28241 1.43812 1.25359 0.95043 0.99985 0.95713 0.86208 0.79853 0.81571 0.78771 1.20097 1.20535 1.19173 1.19389 0.97216 0.85411 1.45985 0.89122 1.43349 1.38190 1.05531 1.28194 1.21198 0.90661 1.05789 0.81984 1.21860 0.97725 1.05104 0.91730 1.23773 0.89106 0.71719 0.82882 1.90707 1.20791 1.44309 1.84325 1.84589 1.46818 1.83767 1.18452 1.19886 0.85110 0.84361 0.84125 1.90588 1.55933 1.35038 1.65771 1.21934 1.01680 0.93646 1.01049 1.22729 0.96812 0.94221 0.82088 0.82892 1.86443 1.19037 1.61115 1.52576 1.18750 0.83422 1.01024 0.92667 1.20624 0.95944 1.02029 0.93996 1.20977 0.92329 1.00227 0.99474 1.20890 0.99961 1.01044 0.91878 1.20575 0.92233 1.03723 0.98229 1.18084 0.93756 1.04743 0.84094 1.43706 1.07752 1.71504 1.07764 1.21623 0.82737 0.74944 0.92082 1.90782 1.74444 1.47232 1.25799 0.91636 0.86421 0.91675 0.88245 0.87919 0.74133 0.87213 0.89326 0.84305 0.85139 0.85419 0.85321 0.74948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.74 11.34 55.50 0.63 -21.11 16 2 C 0.05 1.12 4.92 -17.47 -0.09 1.03 16 3 Si 0.91 18.51 29.61 -169.99 -5.03 13.48 16 4 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.35 -8.33 8.70 -14.93 -0.13 -8.46 16 8 H 0.09 2.03 6.97 -52.49 -0.37 1.66 16 9 N -0.43 -10.21 2.56 -114.81 -0.29 -10.50 16 10 C 0.13 2.96 4.19 -4.05 -0.02 2.94 16 11 C -0.13 -2.39 6.10 -27.88 -0.17 -2.56 16 12 C 0.48 8.69 8.33 36.01 0.30 8.99 16 13 O -0.51 -10.82 16.74 -18.75 -0.31 -11.14 16 14 O -0.52 -7.30 13.42 -39.25 -0.53 -7.83 16 15 C 0.48 10.76 7.48 -10.98 -0.08 10.68 16 16 O -0.59 -14.32 15.09 -8.90 -0.13 -14.45 16 17 C -0.14 -2.70 3.87 -27.88 -0.11 -2.81 16 18 C 0.10 1.77 2.74 -27.84 -0.08 1.69 16 19 H 0.15 2.75 7.95 -51.93 -0.41 2.34 16 20 O -0.28 -4.87 9.38 -34.22 -0.32 -5.19 16 21 C 0.09 1.32 5.85 -39.10 -0.23 1.09 16 22 C -0.11 -1.38 9.99 -39.48 -0.39 -1.77 16 23 C -0.11 -1.12 10.04 -39.55 -0.40 -1.52 16 24 C -0.12 -1.10 10.04 -39.56 -0.40 -1.50 16 25 C -0.13 -1.29 9.94 -39.45 -0.39 -1.68 16 26 C 0.09 1.15 6.57 -83.52 -0.55 0.60 16 27 N -0.66 -8.62 5.46 -9.70 -0.05 -8.67 16 28 C 0.50 8.08 7.19 -10.86 -0.08 8.00 16 29 O -0.51 -9.42 17.95 5.55 0.10 -9.32 16 30 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.12 2.98 5.31 -51.92 -0.28 2.70 16 32 H 0.06 1.63 7.55 -51.93 -0.39 1.23 16 33 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 34 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.40 3.66 9.10 45.56 0.41 4.07 16 36 H 0.11 2.11 8.10 -51.93 -0.42 1.69 16 37 H 0.09 1.60 7.23 -51.93 -0.38 1.23 16 38 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.41 4.27 8.87 -40.82 -0.36 3.91 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -32.00 366.70 -7.09 -39.08 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -3.86 Total: 15.40 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: -2.81 Total: 14.73 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.28 Total: -40.29 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -1.20 Total: -47.93 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.00 -7.09 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.168 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds