Wall clock time and date at job start Wed Apr 1 2020 04:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86808 * 120.00009 * 2 1 4 4 H 1.48495 * 109.47121 * 269.99922 * 3 2 1 5 5 H 1.48501 * 109.46922 * 30.00019 * 3 2 1 6 6 H 1.48498 * 109.46878 * 149.99850 * 3 2 1 7 7 C 1.38950 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00073 * 157.80813 * 7 2 1 9 9 N 1.37095 * 119.99569 * 337.81121 * 7 2 1 10 10 C 1.46494 * 120.00474 * 326.00937 * 9 7 2 11 11 C 1.52994 * 109.47459 * 264.54447 * 10 9 7 12 12 C 1.50703 * 109.47449 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99485 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00227 * 179.97438 * 12 11 10 15 15 C 1.34786 * 119.99605 * 146.01322 * 9 7 2 16 16 O 1.21290 * 119.99744 * 179.97438 * 15 9 7 17 17 C 1.50698 * 120.00116 * 0.02562 * 15 9 7 18 18 C 1.52998 * 109.46982 * 179.97438 * 17 15 9 19 19 H 1.09001 * 109.44051 * 54.92333 * 18 17 15 20 20 O 1.42916 * 109.44226 * 294.99839 * 18 17 15 21 21 C 1.36010 * 117.02476 * 285.32588 * 20 18 17 22 22 C 1.38460 * 120.42792 * 148.47280 * 21 20 18 23 23 C 1.38292 * 119.90047 * 179.41612 * 22 21 20 24 24 C 1.38279 * 120.24115 * 359.97438 * 23 22 21 25 25 C 1.38267 * 120.18814 * 0.24955 * 24 23 22 26 26 C 1.38568 * 119.84609 * 0.02562 * 25 24 23 27 27 N 1.40170 * 120.54049 * 179.07733 * 26 25 24 28 28 C 1.34967 * 119.16971 * 191.68988 * 27 26 25 29 29 O 1.21289 * 120.15134 * 186.07468 * 28 27 26 30 30 H 0.97001 * 119.99764 * 0.02562 * 1 2 3 31 31 H 1.09009 * 109.46880 * 24.54600 * 10 9 7 32 32 H 1.09005 * 109.47227 * 144.54045 * 10 9 7 33 33 H 1.09000 * 109.47092 * 300.00107 * 11 10 9 34 34 H 1.09005 * 109.47229 * 59.99599 * 11 10 9 35 35 H 0.96702 * 116.99826 * 179.97438 * 14 12 11 36 36 H 1.09006 * 109.46783 * 299.99800 * 17 15 9 37 37 H 1.09000 * 109.47249 * 59.99845 * 17 15 9 38 38 H 1.08000 * 120.04996 * 359.43527 * 22 21 20 39 39 H 1.07995 * 119.87867 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.90738 * 180.23395 * 24 23 22 41 41 H 1.07999 * 120.07753 * 180.02562 * 25 24 23 42 42 H 0.97001 * 120.41191 * 11.71606 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0289 -1.2381 -0.3527 9 7 1.3996 -2.3464 0.4495 10 6 0.4287 -2.2775 1.5443 11 6 1.1316 -2.5802 2.8691 12 6 0.1330 -2.5087 3.9955 13 8 -1.0225 -2.2433 3.7624 14 8 0.5269 -2.7409 5.2575 15 6 1.6938 -3.5337 -0.1166 16 8 1.1550 -4.5451 0.2809 17 6 2.6930 -3.6048 -1.2424 18 6 2.8430 -5.0569 -1.7003 19 1 1.8636 -5.4583 -1.9606 20 8 3.4092 -5.8332 -0.6423 21 6 4.7376 -5.6711 -0.3995 22 6 5.2383 -5.8128 0.8836 23 6 6.5927 -5.6575 1.1162 24 6 7.4492 -5.3617 0.0717 25 6 6.9559 -5.2141 -1.2115 26 6 5.5990 -5.3629 -1.4501 27 7 5.0806 -5.1975 -2.7418 28 6 3.7440 -5.1116 -2.9082 29 8 3.2698 -5.0791 -4.0241 30 1 -0.4850 0.8401 -0.0004 31 1 -0.0048 -1.2780 1.5831 32 1 -0.3610 -3.0098 1.3763 33 1 1.5651 -3.5796 2.8303 34 1 1.9213 -1.8479 3.0371 35 1 -0.1495 -2.6831 5.9462 36 1 2.3450 -2.9947 -2.0760 37 1 3.6571 -3.2317 -0.8967 38 1 4.5723 -6.0445 1.7016 39 1 6.9828 -5.7676 2.1171 40 1 8.5065 -5.2453 0.2587 41 1 7.6265 -4.9835 -2.0261 42 1 5.6750 -5.1459 -3.5066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:43 Heat of formation + Delta-G solvation = -183.260937 kcal Electronic energy + Delta-G solvation = -31277.210074 eV Core-core repulsion = 26801.031652 eV Total energy + Delta-G solvation = -4476.178422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.68774 -41.32591 -40.38001 -39.94036 -38.48609 -37.21980 -36.78505 -36.18868 -33.88143 -33.39475 -32.10858 -31.23784 -30.00597 -27.22446 -27.05807 -25.03868 -24.52266 -23.74022 -22.09793 -21.09458 -20.44611 -20.06303 -19.27633 -18.98905 -18.61680 -17.89172 -17.57247 -17.42982 -16.99619 -16.92050 -16.65982 -16.36361 -16.05172 -15.82980 -15.74263 -15.38822 -15.08522 -14.80184 -14.42766 -14.35999 -14.15270 -14.07169 -13.66446 -13.61157 -13.08797 -13.00874 -12.90634 -12.68407 -12.60197 -12.55409 -12.17074 -12.15040 -12.12460 -11.89357 -11.84794 -11.65650 -11.23972 -11.03715 -10.43615 -9.61252 -9.58333 -8.92378 -8.33648 -6.08841 0.07496 0.35239 1.13465 1.19610 1.41170 1.49372 1.60256 1.66137 1.90060 2.05277 2.27546 2.34812 2.73756 2.83387 3.03382 3.14443 3.57389 3.66609 3.84027 3.99989 4.11147 4.14405 4.28299 4.40375 4.42626 4.47148 4.52797 4.59649 4.66482 4.75449 4.87700 4.98349 5.10217 5.27342 5.35188 5.47210 5.51720 5.58141 5.60030 5.72629 5.80302 5.91211 6.35235 6.36122 6.66006 7.00800 7.08380 7.50751 7.94167 8.68561 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.009179 B = 0.004079 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.776331 B = 6863.489785 C = 7888.792034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.004 3.996 3 Si 0.978 3.022 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.360 4.360 8 H 0.105 0.895 9 N -0.445 5.445 10 C 0.132 3.868 11 C -0.116 4.116 12 C 0.495 3.505 13 O -0.550 6.550 14 O -0.506 6.506 15 C 0.468 3.532 16 O -0.612 6.612 17 C -0.127 4.127 18 C 0.104 3.896 19 H 0.136 0.864 20 O -0.300 6.300 21 C 0.050 3.950 22 C -0.124 4.124 23 C -0.103 4.103 24 C -0.108 4.108 25 C -0.116 4.116 26 C 0.071 3.929 27 N -0.643 5.643 28 C 0.505 3.495 29 O -0.540 6.540 30 H 0.272 0.728 31 H 0.097 0.903 32 H 0.033 0.967 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.427 0.573 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.456 -5.783 4.222 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.487 4.487 8 H 0.122 0.878 9 N -0.163 5.163 10 C 0.008 3.992 11 C -0.154 4.154 12 C 0.338 3.662 13 O -0.441 6.441 14 O -0.320 6.320 15 C 0.258 3.742 16 O -0.499 6.499 17 C -0.168 4.168 18 C 0.044 3.956 19 H 0.153 0.847 20 O -0.215 6.215 21 C 0.003 3.997 22 C -0.143 4.143 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.024 4.024 27 N -0.290 5.290 28 C 0.291 3.709 29 O -0.417 6.417 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.288 0.712 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.149 0.851 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.179 0.821 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 16.461 -6.189 3.641 17.959 hybrid contribution -0.786 1.018 -0.271 1.315 sum 15.674 -5.171 3.370 16.846 Atomic orbital electron populations 1.70060 1.07999 1.28919 1.45409 1.26216 0.95546 1.03095 0.95102 0.85174 0.78921 0.77105 0.78712 1.19882 1.21067 1.17525 1.19756 0.97712 0.85435 1.45800 0.87783 1.43565 1.38117 1.05978 1.28614 1.20965 0.90561 1.03461 0.84226 1.21604 0.97812 1.05608 0.90415 1.23373 0.87966 0.70942 0.83889 1.90707 1.22100 1.46174 1.85122 1.84500 1.47438 1.82653 1.17372 1.20472 0.85402 0.83780 0.84550 1.90560 1.56940 1.35797 1.66609 1.21763 1.00843 0.94937 0.99228 1.22456 0.96922 0.93079 0.83175 0.84704 1.86399 1.21117 1.61412 1.52544 1.19151 0.82515 1.03716 0.94274 1.20807 0.97453 1.02891 0.93153 1.21377 0.90970 0.98356 1.01400 1.21404 1.01717 0.98557 0.90909 1.21023 0.91065 1.01696 0.99838 1.18268 0.94811 1.06125 0.83232 1.43470 1.06648 1.70149 1.08746 1.21240 0.83752 0.74990 0.90893 1.90763 1.75252 1.49212 1.26433 0.91784 0.88494 0.94849 0.87939 0.86409 0.71174 0.87817 0.88188 0.85126 0.82185 0.81487 0.82052 0.73172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.87 11.34 21.66 0.25 -46.63 16 2 C 0.00 0.21 4.92 84.93 0.42 0.63 16 3 Si 0.98 37.49 29.61 68.60 2.03 39.52 16 4 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.29 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 7 C -0.36 -17.09 8.70 84.04 0.73 -16.36 16 8 H 0.10 4.57 6.97 -2.91 -0.02 4.55 16 9 N -0.44 -21.53 2.56 -635.54 -1.63 -23.16 16 10 C 0.13 6.39 4.19 86.38 0.36 6.75 16 11 C -0.12 -4.46 6.10 29.85 0.18 -4.27 16 12 C 0.49 17.67 8.33 71.24 0.59 18.26 16 13 O -0.55 -23.63 16.74 21.97 0.37 -23.26 16 14 O -0.51 -13.03 13.42 -51.40 -0.69 -13.72 16 15 C 0.47 22.00 7.48 87.65 0.66 22.65 16 16 O -0.61 -31.39 15.09 10.75 0.16 -31.23 16 17 C -0.13 -4.97 3.87 29.85 0.12 -4.86 16 18 C 0.10 3.80 2.74 29.88 0.08 3.88 16 19 H 0.14 5.28 7.95 -2.39 -0.02 5.26 16 20 O -0.30 -10.94 9.38 -79.85 -0.75 -11.69 16 21 C 0.05 1.46 5.85 22.58 0.13 1.59 16 22 C -0.12 -3.06 9.99 22.34 0.22 -2.84 16 23 C -0.10 -1.70 10.04 22.29 0.22 -1.48 16 24 C -0.11 -1.45 10.04 22.29 0.22 -1.23 16 25 C -0.12 -1.87 9.94 22.36 0.22 -1.65 16 26 C 0.07 1.69 6.57 38.14 0.25 1.94 16 27 N -0.64 -16.00 5.46 -302.87 -1.66 -17.66 16 28 C 0.50 16.57 7.19 87.66 0.63 17.20 16 29 O -0.54 -20.46 17.95 -3.06 -0.05 -20.51 16 30 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.10 5.13 5.31 -2.38 -0.01 5.12 16 32 H 0.03 1.77 7.55 -2.38 -0.02 1.75 16 33 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 34 H 0.12 4.16 8.14 -2.38 -0.02 4.14 16 35 H 0.43 6.69 9.10 -74.06 -0.67 6.02 16 36 H 0.10 4.13 8.10 -2.38 -0.02 4.11 16 37 H 0.10 3.62 7.23 -2.39 -0.02 3.60 16 38 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 42 H 0.43 7.98 8.87 -92.71 -0.82 7.16 16 Total: -1.00 -73.08 366.70 2.69 -70.39 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.39 Total: 37.70 kcal Atomic # 6 Polarization: 35.19 SS G_CDS: 5.04 Total: 40.24 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -3.03 Total: -87.44 kcal Atomic # 8 Polarization: -99.45 SS G_CDS: -0.96 Total: -100.41 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -73.08 2.69 -70.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.868 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds